Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G05370 AT2G05370 |
| malus_domestica | MD09G1153900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr7g0220451 |
| rosa_multiflora | Rmu_sc0008004.1_g000005 Rmu_sc0008004.1_g000006 |
| rosa_samantha | Rh7AG333200 Rh7CG350700 |
| rosa_wichuraiana | Rw6G014790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 211 |
| AciI | CCGC | 1 cut(s) | 475 |
| AclWI | GGATC | 3 cut(s) | 466, 479, 555 |
| AcoI | YGGCCR | 1 cut(s) | 289 |
| AcsI | RAATTY | 2 cut(s) | 188, 302 |
| AdeI | CACNNNGTG | 1 cut(s) | 395 |
| AfaI | GTAC | 1 cut(s) | 404 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 36, 399 |
| AgsI | TTSAA | 2 cut(s) | 83, 177 |
| AluBI | AGCT | 2 cut(s) | 309, 413 |
| AluI | AGCT | 2 cut(s) | 309, 413 |
| AlwI | GGATC | 3 cut(s) | 466, 479, 555 |
| Ama87I | CYCGRG | 1 cut(s) | 543 |
| AoxI | GGCC | 1 cut(s) | 289 |
| ApeKI | GCWGC | 1 cut(s) | 260 |
| ApoI | RAATTY | 2 cut(s) | 188, 302 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 87, 119, 343, 375 |
| AsuHPI | GGTGA | 2 cut(s) | 381, 607 |
| AvaI | CYCGRG | 1 cut(s) | 543 |
| BalI | TGGCCA | 1 cut(s) | 291 |
| BamHI | GGATCC | 1 cut(s) | 471 |
| BanI | GGYRCC | 1 cut(s) | 211 |
| BbvI | GCAGC | 1 cut(s) | 247 |
| BccI | CCATC | 1 cut(s) | 613 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BisI | GCNGC | 1 cut(s) | 261 |
| BlsI | GCNGC | 1 cut(s) | 262 |
| BmeT110I | CYCGRG | 1 cut(s) | 543 |
| BmiI | GGNNCC | 2 cut(s) | 213, 473 |
| BmsI | GCATC | 4 cut(s) | 101, 226, 247, 503 |
| BoxI | GACNNNNGTC | 1 cut(s) | 566 |
| BpuEI | CTTGAG | 1 cut(s) | 386 |
| BsaJI | CCNNGG | 4 cut(s) | 283, 467, 517, 542 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 36, 399 |
| Bse1I | ACTGG | 1 cut(s) | 358 |
| Bse3DI | GCAATG | 1 cut(s) | 229 |
| BseDI | CCNNGG | 4 cut(s) | 283, 467, 517, 542 |
| BseGI | GGATG | 4 cut(s) | 180, 262, 279, 460 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 36, 399 |
| BseMI | GCAATG | 1 cut(s) | 229 |
| BseMII | CTCAG | 1 cut(s) | 309 |
| BseNI | ACTGG | 1 cut(s) | 358 |
| BseRI | GAGGAG | 2 cut(s) | 126, 531 |
| BseXI | GCAGC | 1 cut(s) | 247 |
| BshFI | GGCC | 1 cut(s) | 291 |
| BshNI | GGYRCC | 1 cut(s) | 211 |
| BsiHKCI | CYCGRG | 1 cut(s) | 543 |
| BslFI | GGGAC | 1 cut(s) | 388 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 36, 399 |
| BsmFI | GGGAC | 1 cut(s) | 388 |
| BsnI | GGCC | 1 cut(s) | 291 |
| BsoBI | CYCGRG | 1 cut(s) | 543 |
| Bsp143I | GATC | 4 cut(s) | 162, 445, 471, 547 |
| BspACI | CCGC | 1 cut(s) | 475 |
| BspANI | GGCC | 1 cut(s) | 291 |
| BspCNI | CTCAG | 1 cut(s) | 310 |
| BspLI | GGNNCC | 2 cut(s) | 213, 473 |
| BspMAI | CTGCAG | 1 cut(s) | 265 |
| BspPI | GGATC | 3 cut(s) | 466, 479, 555 |
| BspT107I | GGYRCC | 1 cut(s) | 211 |
| BsrDI | GCAATG | 1 cut(s) | 229 |
| BsrI | ACTGG | 1 cut(s) | 358 |
| BssECI | CCNNGG | 4 cut(s) | 283, 467, 517, 542 |
| BssMI | GATC | 4 cut(s) | 162, 445, 471, 547 |
| BssT1I | CCWWGG | 2 cut(s) | 467, 517 |
| BstC8I | GCNNGC | 2 cut(s) | 293, 381 |
| BstDEI | CTNAG | 2 cut(s) | 318, 571 |
| BstF5I | GGATG | 4 cut(s) | 180, 262, 279, 460 |
| BstKTI | GATC | 4 cut(s) | 165, 448, 474, 550 |
| BstMBI | GATC | 4 cut(s) | 162, 445, 471, 547 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 566 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstV1I | GCAGC | 1 cut(s) | 247 |
| BstX2I | RGATCY | 1 cut(s) | 471 |
| BstYI | RGATCY | 1 cut(s) | 471 |
| BsuRI | GGCC | 1 cut(s) | 291 |
| BtgZI | GCGATG | 2 cut(s) | 124, 249 |
| BtsCI | GGATG | 4 cut(s) | 180, 262, 279, 460 |
| BtsIMutI | CAGTG | 1 cut(s) | 480 |
| Cac8I | GCNNGC | 2 cut(s) | 293, 381 |
| CseI | GACGC | 1 cut(s) | 385 |
| Csp6I | GTAC | 1 cut(s) | 403 |
| CviAII | CATG | 2 cut(s) | 140, 218 |
| CviJI | RGCY | 5 cut(s) | 291, 295, 309, 413, 440 |
| CviKI_1 | RGCY | 5 cut(s) | 291, 295, 309, 413, 440 |
| CviQI | GTAC | 1 cut(s) | 403 |
| DdeI | CTNAG | 2 cut(s) | 318, 571 |
| DpnI | GATC | 4 cut(s) | 164, 447, 473, 549 |
| DpnII | GATC | 4 cut(s) | 162, 445, 471, 547 |
| DraIII | CACNNNGTG | 1 cut(s) | 395 |
| EaeI | YGGCCR | 1 cut(s) | 289 |
| Eco130I | CCWWGG | 2 cut(s) | 467, 517 |
| Eco32I | GATATC | 1 cut(s) | 424 |
| Eco88I | CYCGRG | 1 cut(s) | 543 |
| EcoRV | GATATC | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 2 cut(s) | 467, 517 |
| EcoT22I | ATGCAT | 1 cut(s) | 223 |
| ErhI | CCWWGG | 2 cut(s) | 467, 517 |
| FaeI | CATG | 2 cut(s) | 143, 221 |
| FaqI | GGGAC | 1 cut(s) | 388 |
| FatI | CATG | 2 cut(s) | 139, 217 |
| Fnu4HI | GCNGC | 1 cut(s) | 261 |
| FokI | GGATG | 4 cut(s) | 167, 266, 269, 467 |
| Fsp4HI | GCNGC | 1 cut(s) | 261 |
| GluI | GCNGC | 1 cut(s) | 261 |
| HaeIII | GGCC | 1 cut(s) | 291 |
| HgaI | GACGC | 1 cut(s) | 385 |
| Hin1II | CATG | 2 cut(s) | 143, 221 |
| HincII | GTYRAC | 2 cut(s) | 51, 351 |
| HindII | GTYRAC | 2 cut(s) | 51, 351 |
| HinfI | GANTC | 2 cut(s) | 47, 133 |
| HphI | GGTGA | 2 cut(s) | 381, 607 |
| Hpy166II | GTNNAC | 3 cut(s) | 51, 351, 598 |
| Hpy188I | TCNGA | 1 cut(s) | 319 |
| Hpy188III | TCNNGA | 2 cut(s) | 80, 545 |
| Hpy8I | GTNNAC | 3 cut(s) | 51, 351, 598 |
| Hpy99I | CGWCG | 1 cut(s) | 513 |
| HpyCH4V | TGCA | 3 cut(s) | 114, 221, 263 |
| HpyF3I | CTNAG | 2 cut(s) | 318, 571 |
| Hsp92II | CATG | 2 cut(s) | 143, 221 |
| Kzo9I | GATC | 4 cut(s) | 162, 445, 471, 547 |
| LmnI | GCTCC | 1 cut(s) | 604 |
| LpnPI | CCDG | 4 cut(s) | 305, 339, 385, 483 |
| Lsp1109I | GCAGC | 1 cut(s) | 247 |
| LweI | GCATC | 4 cut(s) | 101, 226, 247, 503 |
| MaeIII | GTNAC | 3 cut(s) | 18, 25, 197 |
| MalI | GATC | 4 cut(s) | 164, 447, 473, 549 |
| MboI | GATC | 4 cut(s) | 162, 445, 471, 547 |
| MboII | GAAGA | 1 cut(s) | 16 |
| MflI | RGATCY | 1 cut(s) | 471 |
| MlsI | TGGCCA | 1 cut(s) | 291 |
| MluCI | AATT | 4 cut(s) | 154, 188, 302, 504 |
| MluNI | TGGCCA | 1 cut(s) | 291 |
| MlyI | GAGTC | 2 cut(s) | 56, 127 |
| MnlI | CCTC | 5 cut(s) | 147, 225, 293, 394, 552 |
| Mox20I | TGGCCA | 1 cut(s) | 291 |
| Mph1103I | ATGCAT | 1 cut(s) | 223 |
| MscI | TGGCCA | 1 cut(s) | 291 |
| MseI | TTAA | 4 cut(s) | 119, 251, 299, 336 |
| MslI | CAYNNNNRTG | 2 cut(s) | 234, 612 |
| Msp20I | TGGCCA | 1 cut(s) | 291 |
| MspA1I | CMGCKG | 1 cut(s) | 413 |
| NdeII | GATC | 4 cut(s) | 162, 445, 471, 547 |
| NlaIII | CATG | 2 cut(s) | 143, 221 |
| NlaIV | GGNNCC | 2 cut(s) | 213, 473 |
| NmuCI | GTSAC | 1 cut(s) | 18 |
| NsiI | ATGCAT | 1 cut(s) | 223 |
| PkrI | GCNGC | 1 cut(s) | 262 |
| PleI | GAGTC | 2 cut(s) | 55, 127 |
| PpsI | GAGTC | 2 cut(s) | 55, 127 |
| PshAI | GACNNNNGTC | 1 cut(s) | 566 |
| PspN4I | GGNNCC | 2 cut(s) | 213, 473 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 515, 547 |
| PstI | CTGCAG | 1 cut(s) | 265 |
| PsuI | RGATCY | 1 cut(s) | 471 |
| PvuII | CAGCTG | 1 cut(s) | 413 |
| RsaI | GTAC | 1 cut(s) | 404 |
| RsaNI | GTAC | 1 cut(s) | 403 |
| RseI | CAYNNNNRTG | 2 cut(s) | 234, 612 |
| SaqAI | TTAA | 4 cut(s) | 119, 251, 299, 336 |
| SatI | GCNGC | 1 cut(s) | 261 |
| Sau3AI | GATC | 4 cut(s) | 162, 445, 471, 547 |
| SchI | GAGTC | 2 cut(s) | 56, 127 |
| SetI | ASST | 2 cut(s) | 311, 415 |
| SfaNI | GCATC | 4 cut(s) | 101, 226, 247, 503 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 234, 612 |
| SmlI | CTYRAG | 1 cut(s) | 365 |
| SmoI | CTYRAG | 1 cut(s) | 365 |
| Sse9I | AATT | 4 cut(s) | 154, 188, 302, 504 |
| SsiI | CCGC | 1 cut(s) | 475 |
| StyI | CCWWGG | 2 cut(s) | 467, 517 |
| TaqI | TCGA | 3 cut(s) | 444, 511, 526 |
| TasI | AATT | 4 cut(s) | 154, 188, 302, 504 |
| Tru1I | TTAA | 4 cut(s) | 119, 251, 299, 336 |
| Tru9I | TTAA | 4 cut(s) | 119, 251, 299, 336 |
| TscAI | CASTG | 1 cut(s) | 487 |
| TseFI | GTSAC | 1 cut(s) | 18 |
| TseI | GCWGC | 1 cut(s) | 260 |
| Tsp45I | GTSAC | 1 cut(s) | 18 |
| TspDTI | ATGAA | 2 cut(s) | 17, 523 |
| TspGWI | ACGGA | 1 cut(s) | 617 |
| TspRI | CASTG | 1 cut(s) | 487 |
| XapI | RAATTY | 2 cut(s) | 188, 302 |
| Zsp2I | ATGCAT | 1 cut(s) | 223 |