Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008004.1

Orthogroup ID

OG0018766

Physical Location & Seq

Genomic Coordinates Reverse (-)

28472 .. 29608

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008004.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgaagttatattttcgaagagaagctacattttcatttaaagggcagaataagcatgctgtgataaaatgtgattttaaggtggagttccaggtaagagaaattagtgaatccaaaacctacaaagagcttacatatcttgtacttctgttgaggctggcttcatcaccttgggtttcatatcgaactgctgatgatgatagttatcaatcatttccaccatgttacttggatgatgatgttccttggattagaaccacagatttcactcctagtggggcaatcgggcgttgtaattcttatagagtttcaatcccaccgcggcatggtgctgagttgaagaaggccatgatttatcttgaagaacaaagggtgcaagtggatcatatcaaaaagccacctaggattcaggatgaacctgattttgaaaggcccatgtcagattatttcttttctattcattacaaggaaaatataccatttgagatattgttcttgatcactgcagtgatgcacaagggcattttaaatcagcaccagttgtcagacggcttttttgatttactgggaaaccaaccaaaggagatcattgttgctgcattgaaacacttatattcatacaaatacccagtttttgatgcctctgaagagctgaaacttgttcaagaaaggttgctgacaaaccccacgcttatgcacaatgggattgctgaagttaggaggttggtgattaccccaactaaagcctattgtcttccaccagagaatggaccatccaatagggttcttagaaaatataaagaagttgctaataggtttttaagggttacctttatggatgaaggcatgcaaacaatgaattccaatgtcatgaattcttatgttgctcctattgtaaaagaaatcacaggaaacaccttccctcagaaaacaaaagtctatgcaagggttcaggacattctgttgaatggatttaatttatgtgatcgtaagtactctttcttggccttttcatccaaccaaccgaagtactgttatgcctggtttttcgctgaagacgagaagattaacatacaaggaatgaaaaattggttagggaagttcactaagagaaacgttacaaaggttgacccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001172 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0003968 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007275 GO:0008037 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009856 GO:0009875 GO:0009888 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010073 GO:0010074 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0032501 GO:0032502 GO:0032774 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0044706 GO:0045087 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048519 GO:0048544 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:0097747 GO:0098542 GO:0098586 GO:0098727 GO:0099402 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

378

Amino Acids

44.15

Weight (kDa)

9.03

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05370 AT2G05370
malus_domestica	MD09G1153900.v1.1
rosa_chinensis	RchiOBHm_Chr7g0220451
rosa_multiflora	Rmu_sc0008004.1_g000005 Rmu_sc0008004.1_g000006
rosa_samantha	Rh7AG333200 Rh7CG350700
rosa_wichuraiana	Rw6G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AccII	CGCG	1 cut(s)	322
AciI	CCGC	2 cut(s)	320, 322
AclI	AACGTT	1 cut(s)	1116
AclWI	GGATC	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	859, 874
AcuI	CTGAAG	3 cut(s)	666, 732, 1074
AfaI	GTAC	3 cut(s)	144, 995, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	326, 580, 767
AgsI	TTSAA	7 cut(s)	312, 340, 362, 428, 604, 665, 967
AjnI	CCWGG	2 cut(s)	90, 1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	1072, 1104
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	3 cut(s)	26, 130, 652
AluI	AGCT	3 cut(s)	26, 130, 652
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	3 cut(s)	345, 431, 1005
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	859, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AspA2I	CCTAGG	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	432, 770
AsuHPI	GGTGA	2 cut(s)	159, 739
AsuII	TTCGAA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	770
AvrII	CCTAGG	1 cut(s)	401
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BbsI	GAAGAC	2 cut(s)	746, 1062
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	1 cut(s)	781
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	2 cut(s)	92, 1042
BclI	TGATCA	1 cut(s)	498
BfaI	CTAG	2 cut(s)	273, 402
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	2 cut(s)	323, 597
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	2 cut(s)	324, 598
BmcAI	AGTACT	2 cut(s)	995, 1031
Bme1390I	CCNGG	2 cut(s)	92, 1042
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	432, 770
BmrFI	CCNGG	2 cut(s)	92, 1042
BmrI	ACTGGG	2 cut(s)	575, 623
BmsI	GCATC	2 cut(s)	501, 628
BmuI	ACTGGG	2 cut(s)	575, 623
BpiI	GAAGAC	2 cut(s)	746, 1062
Bpu14I	TTCGAA	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	4 cut(s)	170, 245, 320, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 580, 767
Bse1I	ACTGG	3 cut(s)	538, 570, 629
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	92, 1042
BseDI	CCNNGG	4 cut(s)	170, 245, 320, 401
BseGI	GGATG	5 cut(s)	238, 418, 773, 844, 1013
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	326, 580, 767
BseMII	CTCAG	2 cut(s)	324, 938
BseNI	ACTGG	3 cut(s)	538, 570, 629
BseXI	GCAGC	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	347, 433, 1007
BslI	CCNNNNNNNGG	3 cut(s)	326, 580, 767
BsnI	GGCC	3 cut(s)	347, 433, 1007
Bsp119I	TTCGAA	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	382, 498, 585, 985
BspACI	CCGC	2 cut(s)	320, 322
BspANI	GGCC	3 cut(s)	347, 433, 1007
BspCNI	CTCAG	2 cut(s)	325, 937
BspFNI	CGCG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	870
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	390
BspQI	GCTCTTC	1 cut(s)	642
BspT104I	TTCGAA	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	538, 570, 629
BssECI	CCNNGG	4 cut(s)	170, 245, 320, 401
BssMI	GATC	4 cut(s)	382, 498, 585, 985
BssT1I	CCWWGG	3 cut(s)	170, 245, 401
Bst2UI	CCWGG	2 cut(s)	92, 1042
Bst4CI	ACNGT	1 cut(s)	1034
Bst6I	CTCTTC	2 cut(s)	13, 642
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	57, 159, 848
BstDEI	CTNAG	4 cut(s)	333, 788, 924, 1107
BstDSI	CCRYGG	1 cut(s)	320
BstEII	GGTNACC	1 cut(s)	826
BstF5I	GGATG	5 cut(s)	238, 418, 773, 844, 1013
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	4 cut(s)	385, 501, 588, 988
BstMBI	GATC	4 cut(s)	382, 498, 585, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	92, 1042
BstNSI	RCATGY	2 cut(s)	59, 850
BstPI	GGTNACC	1 cut(s)	826
BstSCI	CCNGG	2 cut(s)	90, 1040
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	2 cut(s)	746, 1062
BsuRI	GGCC	3 cut(s)	347, 433, 1007
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	5 cut(s)	238, 418, 773, 844, 1013
BtsI	GCAGTG	2 cut(s)	501, 513
BtsIMutI	CAGTG	2 cut(s)	501, 513
Cac8I	GCNNGC	3 cut(s)	57, 159, 848
CciI	TCATGA	1 cut(s)	870
Cfr13I	GGNCC	2 cut(s)	432, 770
Cfr42I	CCGCGG	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	143, 994, 1030
CviAII	CATG	7 cut(s)	56, 222, 326, 349, 436, 847, 871
CviQI	GTAC	3 cut(s)	143, 994, 1030
DdeI	CTNAG	4 cut(s)	333, 788, 924, 1107
DpnI	GATC	4 cut(s)	384, 500, 587, 987
DpnII	GATC	4 cut(s)	382, 498, 585, 985
DraI	TTTAAA	2 cut(s)	40, 528
Eam1104I	CTCTTC	2 cut(s)	13, 642
EarI	CTCTTC	2 cut(s)	13, 642
Eco130I	CCWWGG	3 cut(s)	170, 245, 401
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	3 cut(s)	666, 732, 1074
Eco91I	GGTNACC	1 cut(s)	826
EcoO65I	GGTNACC	1 cut(s)	826
EcoRI	GAATTC	2 cut(s)	859, 874
EcoRII	CCWGG	2 cut(s)	90, 1040
EcoT14I	CCWWGG	3 cut(s)	170, 245, 401
ErhI	CCWWGG	3 cut(s)	170, 245, 401
FaeI	CATG	7 cut(s)	59, 225, 329, 352, 439, 850, 874
FatI	CATG	7 cut(s)	55, 221, 325, 348, 435, 846, 870
FbaI	TGATCA	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	323, 597
FokI	GGATG	5 cut(s)	245, 425, 760, 851, 1000
Fsp4HI	GCNGC	2 cut(s)	323, 597
FspBI	CTAG	2 cut(s)	273, 402
GluI	GCNGC	2 cut(s)	323, 597
HaeIII	GGCC	3 cut(s)	347, 433, 1007
Hin1II	CATG	7 cut(s)	59, 225, 329, 352, 439, 850, 874
HincII	GTYRAC	1 cut(s)	1129
HindII	GTYRAC	1 cut(s)	1129
HinfI	GANTC	2 cut(s)	110, 406
HphI	GGTGA	2 cut(s)	159, 739
Hpy166II	GTNNAC	2 cut(s)	1104, 1129
Hpy188I	TCNGA	4 cut(s)	442, 547, 646, 927
Hpy188III	TCNNGA	6 cut(s)	359, 410, 496, 665, 871, 953
Hpy8I	GTNNAC	2 cut(s)	1104, 1129
HpyAV	CCTTC	3 cut(s)	337, 836, 928
HpyCH4III	ACNGT	1 cut(s)	1034
HpyCH4IV	ACGT	1 cut(s)	1116
HpyCH4V	TGCA	7 cut(s)	376, 506, 514, 599, 697, 850, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	4 cut(s)	333, 788, 924, 1107
HpySE526I	ACGT	1 cut(s)	1116
Hsp92II	CATG	7 cut(s)	59, 225, 329, 352, 439, 850, 874
Ksp22I	TGATCA	1 cut(s)	498
KspI	CCGCGG	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	382, 498, 585, 985
LguI	GCTCTTC	1 cut(s)	642
LmnI	GCTCC	1 cut(s)	892
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	2 cut(s)	501, 628
MaeI	CTAG	2 cut(s)	273, 402
MaeII	ACGT	1 cut(s)	1116
MaeIII	GTNAC	3 cut(s)	224, 826, 1117
MalI	GATC	4 cut(s)	384, 500, 587, 987
MboI	GATC	4 cut(s)	382, 498, 585, 985
MboII	GAAGA	7 cut(s)	30, 352, 374, 659, 746, 1067, 1075
MluCI	AATT	6 cut(s)	102, 295, 859, 874, 976, 1087
MmeI	TCCRAC	1 cut(s)	1041
MnlI	CCTC	4 cut(s)	147, 652, 714, 933
MseI	TTAA	7 cut(s)	39, 78, 527, 821, 975, 1068, 1135
MslI	CAYNNNNRTG	2 cut(s)	506, 692
MspA1I	CMGCKG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	92, 1042
MvaI	CCWGG	2 cut(s)	92, 1042
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	4 cut(s)	382, 498, 585, 985
NlaIII	CATG	7 cut(s)	59, 225, 329, 352, 439, 850, 874
NspI	RCATGY	2 cut(s)	59, 850
NspV	TTCGAA	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	506
PaeI	GCATGC	2 cut(s)	59, 850
PagI	TCATGA	1 cut(s)	870
PciSI	GCTCTTC	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	1056
PfeI	GAWTC	2 cut(s)	110, 406
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	2 cut(s)	324, 598
Psp1406I	AACGTT	1 cut(s)	1116
Psp6I	CCWGG	2 cut(s)	90, 1040
PspEI	GGTNACC	1 cut(s)	826
PspGI	CCWGG	2 cut(s)	90, 1040
PspPI	GGNCC	2 cut(s)	432, 770
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	3 cut(s)	144, 995, 1031
RsaNI	GTAC	3 cut(s)	143, 994, 1030
RseI	CAYNNNNRTG	2 cut(s)	506, 692
SacII	CCGCGG	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	7 cut(s)	39, 78, 527, 821, 975, 1068, 1135
SatI	GCNGC	2 cut(s)	323, 597
Sau3AI	GATC	4 cut(s)	382, 498, 585, 985
Sau96I	GGNCC	2 cut(s)	432, 770
ScaI	AGTACT	2 cut(s)	995, 1031
ScrFI	CCNGG	2 cut(s)	92, 1042
SfaNI	GCATC	2 cut(s)	501, 628
SfcI	CTRYAG	1 cut(s)	504
Sfr303I	CCGCGG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	16
SgrBI	CCGCGG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	2 cut(s)	506, 692
SphI	GCATGC	2 cut(s)	59, 850
Sse9I	AATT	6 cut(s)	102, 295, 859, 874, 976, 1087
SsiI	CCGC	2 cut(s)	320, 322
SspMI	CTAG	2 cut(s)	273, 402
StyD4I	CCNGG	2 cut(s)	90, 1040
StyI	CCWWGG	3 cut(s)	170, 245, 401
TaaI	ACNGT	1 cut(s)	1034
TaiI	ACGT	1 cut(s)	1119
TaqI	TCGA	2 cut(s)	16, 184
TasI	AATT	6 cut(s)	102, 295, 859, 874, 976, 1087
TatI	WGTACW	3 cut(s)	142, 993, 1029
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	110, 406
Tru1I	TTAA	7 cut(s)	39, 78, 527, 821, 975, 1068, 1135
Tru9I	TTAA	7 cut(s)	39, 78, 527, 821, 975, 1068, 1135
TscAI	CASTG	2 cut(s)	508, 513
TseI	GCWGC	1 cut(s)	596
TspRI	CASTG	2 cut(s)	508, 513
Van91I	CCANNNNNTGG	1 cut(s)	767
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	2 cut(s)	859, 874
XceI	RCATGY	2 cut(s)	59, 850
XmaJI	CCTAGG	1 cut(s)	401
XspI	CTAG	2 cut(s)	273, 402
ZrmI	AGTACT	2 cut(s)	995, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.