Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G05370 AT2G05370 |
| malus_domestica | MD09G1153900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr7g0220451 |
| rosa_multiflora | Rmu_sc0008004.1_g000005 Rmu_sc0008004.1_g000006 |
| rosa_samantha | Rh7AG333200 Rh7CG350700 |
| rosa_wichuraiana | Rw6G014790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 169 |
| AgsI | TTSAA | 2 cut(s) | 200, 310 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 93, 125, 317, 349 |
| AluBI | AGCT | 3 cut(s) | 48, 104, 178 |
| AluI | AGCT | 3 cut(s) | 48, 104, 178 |
| Alw21I | GWGCWC | 1 cut(s) | 180 |
| ApeKI | GCWGC | 1 cut(s) | 284 |
| ApoI | RAATTY | 1 cut(s) | 169 |
| AspLEI | GCGC | 1 cut(s) | 294 |
| BanII | GRGCYC | 2 cut(s) | 180, 341 |
| Bbv12I | GWGCWC | 1 cut(s) | 180 |
| BbvI | GCAGC | 1 cut(s) | 271 |
| BfaI | CTAG | 3 cut(s) | 41, 155, 367 |
| BfoI | RGCGCY | 1 cut(s) | 295 |
| BglII | AGATCT | 1 cut(s) | 82 |
| BisI | GCNGC | 1 cut(s) | 285 |
| BlsI | GCNGC | 1 cut(s) | 286 |
| BmsI | GCATC | 1 cut(s) | 271 |
| BseGI | GGATG | 1 cut(s) | 286 |
| BseMII | CTCAG | 1 cut(s) | 333 |
| BseRI | GAGGAG | 1 cut(s) | 361 |
| BseXI | GCAGC | 1 cut(s) | 271 |
| BseYI | CCCAGC | 1 cut(s) | 287 |
| BsiHKAI | GWGCWC | 1 cut(s) | 180 |
| Bsp1286I | GDGCHC | 2 cut(s) | 180, 341 |
| Bsp143I | GATC | 1 cut(s) | 82 |
| BspCNI | CTCAG | 1 cut(s) | 334 |
| BssMI | GATC | 1 cut(s) | 82 |
| BstDEI | CTNAG | 1 cut(s) | 342 |
| BstF5I | GGATG | 1 cut(s) | 286 |
| BstH2I | RGCGCY | 1 cut(s) | 295 |
| BstHHI | GCGC | 1 cut(s) | 294 |
| BstKTI | GATC | 1 cut(s) | 85 |
| BstMBI | GATC | 1 cut(s) | 82 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstV1I | GCAGC | 1 cut(s) | 271 |
| BstX2I | RGATCY | 1 cut(s) | 82 |
| BstYI | RGATCY | 1 cut(s) | 82 |
| BtsCI | GGATG | 1 cut(s) | 286 |
| BtsIMutI | CAGTG | 3 cut(s) | 27, 270, 320 |
| CfoI | GCGC | 1 cut(s) | 294 |
| CviAII | CATG | 2 cut(s) | 68, 233 |
| CviJI | RGCY | 7 cut(s) | 48, 104, 115, 133, 178, 229, 339 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 104, 115, 133, 178, 229, 339 |
| DdeI | CTNAG | 1 cut(s) | 342 |
| DpnI | GATC | 1 cut(s) | 84 |
| DpnII | GATC | 1 cut(s) | 82 |
| Ecl136II | GAGCTC | 1 cut(s) | 178 |
| Eco24I | GRGCYC | 2 cut(s) | 180, 341 |
| Eco53kI | GAGCTC | 1 cut(s) | 178 |
| EcoICRI | GAGCTC | 1 cut(s) | 178 |
| EcoT22I | ATGCAT | 1 cut(s) | 238 |
| EcoT38I | GRGCYC | 2 cut(s) | 180, 341 |
| FaeI | CATG | 2 cut(s) | 71, 236 |
| FaiI | YATR | 4 cut(s) | 69, 216, 234, 278 |
| FatI | CATG | 2 cut(s) | 67, 232 |
| Fnu4HI | GCNGC | 1 cut(s) | 285 |
| FokI | GGATG | 1 cut(s) | 293 |
| FriOI | GRGCYC | 2 cut(s) | 180, 341 |
| Fsp4HI | GCNGC | 1 cut(s) | 285 |
| FspBI | CTAG | 3 cut(s) | 41, 155, 367 |
| GlaI | GCGC | 1 cut(s) | 293 |
| GluI | GCNGC | 1 cut(s) | 285 |
| GsaI | CCCAGC | 1 cut(s) | 291 |
| HaeII | RGCGCY | 1 cut(s) | 295 |
| HhaI | GCGC | 1 cut(s) | 294 |
| Hin1II | CATG | 2 cut(s) | 71, 236 |
| Hin6I | GCGC | 1 cut(s) | 292 |
| HinP1I | GCGC | 1 cut(s) | 292 |
| HincII | GTYRAC | 1 cut(s) | 299 |
| HindII | GTYRAC | 1 cut(s) | 299 |
| HinfI | GANTC | 2 cut(s) | 37, 158 |
| Hpy166II | GTNNAC | 2 cut(s) | 91, 299 |
| Hpy188I | TCNGA | 2 cut(s) | 168, 343 |
| Hpy188III | TCNNGA | 1 cut(s) | 155 |
| Hpy8I | GTNNAC | 2 cut(s) | 91, 299 |
| HpyAV | CCTTC | 2 cut(s) | 5, 9 |
| HpyCH4V | TGCA | 3 cut(s) | 191, 236, 244 |
| HpyF3I | CTNAG | 1 cut(s) | 342 |
| Hsp92II | CATG | 2 cut(s) | 71, 236 |
| HspAI | GCGC | 1 cut(s) | 292 |
| Kzo9I | GATC | 1 cut(s) | 82 |
| LpnPI | CCDG | 3 cut(s) | 101, 270, 273 |
| Lsp1109I | GCAGC | 1 cut(s) | 271 |
| LweI | GCATC | 1 cut(s) | 271 |
| MaeI | CTAG | 3 cut(s) | 41, 155, 367 |
| MaeIII | GTNAC | 2 cut(s) | 23, 265 |
| MalI | GATC | 1 cut(s) | 84 |
| MboI | GATC | 1 cut(s) | 82 |
| MboII | GAAGA | 2 cut(s) | 92, 364 |
| MflI | RGATCY | 1 cut(s) | 82 |
| MhlI | GDGCHC | 2 cut(s) | 180, 341 |
| MluCI | AATT | 3 cut(s) | 5, 108, 169 |
| MlyI | GAGTC | 2 cut(s) | 31, 167 |
| MnlI | CCTC | 3 cut(s) | 162, 339, 342 |
| Mph1103I | ATGCAT | 1 cut(s) | 238 |
| MseI | TTAA | 1 cut(s) | 72 |
| NdeII | GATC | 1 cut(s) | 82 |
| NlaIII | CATG | 2 cut(s) | 71, 236 |
| NmuCI | GTSAC | 2 cut(s) | 23, 265 |
| NsiI | ATGCAT | 1 cut(s) | 238 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PkrI | GCNGC | 1 cut(s) | 286 |
| PleI | GAGTC | 2 cut(s) | 31, 166 |
| PpsI | GAGTC | 2 cut(s) | 31, 166 |
| Psp124BI | GAGCTC | 1 cut(s) | 180 |
| PspFI | CCCAGC | 1 cut(s) | 287 |
| PsuI | RGATCY | 1 cut(s) | 82 |
| SacI | GAGCTC | 1 cut(s) | 180 |
| SaqAI | TTAA | 1 cut(s) | 72 |
| SatI | GCNGC | 1 cut(s) | 285 |
| Sau3AI | GATC | 1 cut(s) | 82 |
| SchI | GAGTC | 2 cut(s) | 31, 167 |
| SduI | GDGCHC | 2 cut(s) | 180, 341 |
| SetI | ASST | 5 cut(s) | 50, 106, 128, 180, 225 |
| SfaNI | GCATC | 1 cut(s) | 271 |
| Sse9I | AATT | 3 cut(s) | 5, 108, 169 |
| SspI | AATATT | 1 cut(s) | 196 |
| SspMI | CTAG | 3 cut(s) | 41, 155, 367 |
| SstI | GAGCTC | 1 cut(s) | 180 |
| TaqII | GACCGA | 1 cut(s) | 284 |
| TasI | AATT | 3 cut(s) | 5, 108, 169 |
| Tru1I | TTAA | 1 cut(s) | 72 |
| Tru9I | TTAA | 1 cut(s) | 72 |
| TscAI | CASTG | 3 cut(s) | 34, 270, 327 |
| TseFI | GTSAC | 2 cut(s) | 23, 265 |
| TseI | GCWGC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 2 cut(s) | 23, 265 |
| TspDTI | ATGAA | 1 cut(s) | 225 |
| TspRI | CASTG | 3 cut(s) | 34, 270, 327 |
| XapI | RAATTY | 1 cut(s) | 169 |
| XbaI | TCTAGA | 1 cut(s) | 154 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XspI | CTAG | 3 cut(s) | 41, 155, 367 |
| Zsp2I | ATGCAT | 1 cut(s) | 238 |