Rh7CG350700
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018766
Physical Location & Seq
Reverse (-)
39855052 .. 39855492
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG350700.1

Sequence Viewer

Length: 441 bp
ATGGATGCTGCTGGGAGCTATCAACTCTTTTTCAACAACCAAGCACTGAAAGTAAGTTTGGGCTATGAGAGGAGGAAGAACGAAGCAATCAAGATAGCTGATGTACGTTTTGAGATTGGAAATTTAGTTTGCCTAGATGAGTTCTTTGTTGCTTGGAGGGGACCACCTTATGGAGTTGATTTTGTTGTGGATTGTTTTGATGGTACAATGAAATTTTATTTTCAAAGAGATGCTAAATTTTCATTTAAAGGGCAGAATAAGCATGCTGTGACTGATCTATATCCAAACATGCTGAAGGACTCTCCTCAAGACTGTCAGATTTTTGTTCTAGGACAATTAGTTATTTGCTATGAAAATGTGGCATTCATGTCCAAAGCAATATGGCATTCAGGATTAACCCGAAAAAAAAAAGATCCCGCTTGTAACAAAAAAAAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001172 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0003968 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007275 GO:0008037 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009856 GO:0009875 GO:0009888 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010073 GO:0010074 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0032501 GO:0032502 GO:0032774 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0044706 GO:0045087 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048519 GO:0048544 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:0097747 GO:0098542 GO:0098586 GO:0098727 GO:0099402 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

146

Amino Acids

16.8

Weight (kDa)

8.94

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RDR6_2nd PF24577 31 - 91 1.3e-19 RNA-dependent RNA polymerase 6 second domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018766)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05370 AT2G05370
malus_domestica MD09G1153900.v1.1
rosa_chinensis RchiOBHm_Chr7g0220451
rosa_multiflora Rmu_sc0008004.1_g000005 Rmu_sc0008004.1_g000006
rosa_samantha Rh7AG333200 Rh7CG350700
rosa_wichuraiana Rw6G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AciI CCGC 1 cut(s) 417
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 3 cut(s) 121, 212, 236
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 2 cut(s) 105, 205
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 2 cut(s) 34, 224
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 2 cut(s) 18, 98
AluI AGCT 2 cut(s) 18, 98
AlwI GGATC 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 3 cut(s) 121, 212, 236
AspS9I GGNCC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 161
BccI CCATC 1 cut(s) 194
BfaI CTAG 2 cut(s) 134, 329
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 279
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 85, 294
BseYI CCCAGC 1 cut(s) 11
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 174
BsmI GAATGC 2 cut(s) 362, 385
Bsp143I GATC 2 cut(s) 274, 412
BspACI CCGC 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 407
BssMI GATC 2 cut(s) 274, 412
Bst4CI ACNGT 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 264
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 277, 415
BstMBI GATC 2 cut(s) 274, 412
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNSI RCATGY 2 cut(s) 266, 292
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 104, 204
CviAII CATG 3 cut(s) 263, 289, 367
CviJI RGCY 3 cut(s) 18, 63, 98
CviKI_1 RGCY 3 cut(s) 18, 63, 98
CviQI GTAC 2 cut(s) 104, 204
DpnI GATC 2 cut(s) 276, 414
DpnII GATC 2 cut(s) 274, 412
DraI TTTAAA 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 314
FaeI CATG 3 cut(s) 266, 292, 370
FaiI YATR 8 cut(s) 66, 171, 264, 280, 290, 351, 368, 382
FaqI GGGAC 1 cut(s) 174
FatI CATG 3 cut(s) 262, 288, 366
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 2 cut(s) 134, 329
GluI GCNGC 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 266, 292, 370
HinfI GANTC 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 318, 440
Hpy188III TCNNGA 3 cut(s) 91, 308, 390
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 3 cut(s) 266, 292, 370
Kzo9I GATC 2 cut(s) 274, 412
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 1 cut(s) 375
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 134, 329
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 268, 422
MalI GATC 2 cut(s) 276, 414
MboI GATC 2 cut(s) 274, 412
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 412
MluCI AATT 4 cut(s) 121, 212, 236, 335
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 4 cut(s) 63, 66, 150, 315
MseI TTAA 2 cut(s) 246, 395
Mva1269I GAATGC 2 cut(s) 362, 385
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 2 cut(s) 274, 412
NlaIII CATG 3 cut(s) 266, 292, 370
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 2 cut(s) 266, 292
PaeI GCATGC 1 cut(s) 266
PctI GAATGC 2 cut(s) 362, 385
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 161
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 2 cut(s) 105, 205
RsaNI GTAC 2 cut(s) 104, 204
SaqAI TTAA 2 cut(s) 246, 395
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 2 cut(s) 274, 412
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 293
SetI ASST 4 cut(s) 20, 100, 109, 169
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
SphI GCATGC 1 cut(s) 266
Sse9I AATT 4 cut(s) 121, 212, 236, 335
SsiI CCGC 1 cut(s) 417
SspMI CTAG 2 cut(s) 134, 329
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 109
TasI AATT 4 cut(s) 121, 212, 236, 335
Tru1I TTAA 2 cut(s) 246, 395
Tru9I TTAA 2 cut(s) 246, 395
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 4 cut(s) 224, 231, 355, 366
TspRI CASTG 1 cut(s) 51
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 3 cut(s) 121, 212, 236
XceI RCATGY 2 cut(s) 266, 292
XspI CTAG 2 cut(s) 134, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.