AT2G07775

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0019640
Physical Location & Seq
Forward (+)
3483035 .. 3484062
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07775.1

Sequence Viewer

Length: 387 bp
ATGGAGTCCCATATGCTTAGCCATCAGCTGAGAAAGATTGATACCAAGTCGGAGCATATCCCGTTCGAGGGTCCACCTATTCGGGAGCCAATGCCGCCACTAGAGAGAGGTTCACTTGCTTACCTTGCCGGGTCACCAGGAGAGGTTGTGCAGAACAAGACCAATAACCCGATCTCTGCTAAGGAGCAATACGGATCGGATAAGAGAGGATCCATCTTCTCGGGGGAGTCTAAAAGAAGACCACCACTTCCATACGGAAAAGATTCGAACCTGCAGTCTTCAGGTCATGAGCCTGATGAGTTTTCTTCCTCTACCCAGCGTCTTCCCCTTCTCTTTCTTTCACAATTCCCACCTAGGTCCCCCGCTTTGTTAGCTTGGCCGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.18

Weight (kDa)

8.06

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07775
pyrus_communis pycom01g00110
rosa_laevigata RLG00000000161 RLG00000000418
rosa_multiflora Rmu_sc0013945.1_g000007
rosa_roxburghii Rroxscaffold_2G00118900 Rroxscaffold_2G00118910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 279
AciI CCGC 2 cut(s) 95, 363
AclWI GGATC 3 cut(s) 202, 204, 217
AcoI YGGCCR 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 67, 68
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 28, 374
AluI AGCT 2 cut(s) 28, 374
AlwI GGATC 3 cut(s) 202, 204, 217
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 262
AspA2I CCTAGG 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 71, 357
AsuC2I CCSGG 2 cut(s) 130, 381
AsuHPI GGTGA 1 cut(s) 126
AsuII TTCGAA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 2 cut(s) 71, 357
AvrII CCTAGG 1 cut(s) 353
BamHI GGATCC 1 cut(s) 209
BbsI GAAGAC 3 cut(s) 244, 270, 314
BccI CCATC 2 cut(s) 30, 221
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 2 cut(s) 130, 381
BfaI CTAG 2 cut(s) 101, 354
BfmI CTRYAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 279
BisI GCNGC 1 cut(s) 95
BlnI CCTAGG 1 cut(s) 353
BlpI GCTNAGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 3 cut(s) 130, 138, 381
Bme18I GGWCC 2 cut(s) 71, 357
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 71, 357
BmiI GGNNCC 4 cut(s) 72, 87, 211, 359
BmrFI CCNGG 3 cut(s) 130, 138, 381
BpiI GAAGAC 3 cut(s) 244, 270, 314
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 130, 381
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 68
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 67, 68
BseMII CTCAG 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 2 cut(s) 129, 380
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 67, 68
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 266
Bsp143I GATC 3 cut(s) 171, 194, 209
Bsp1720I GCTNAGC 1 cut(s) 17
BspACI CCGC 2 cut(s) 95, 363
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 4 cut(s) 72, 87, 211, 359
BspMAI CTGCAG 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 279
BspPI GGATC 3 cut(s) 202, 204, 217
BspT104I TTCGAA 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 171, 194, 209
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 17, 29, 180
BstEII GGTNACC 1 cut(s) 132
BstKTI GATC 3 cut(s) 174, 197, 212
BstMBI GATC 3 cut(s) 171, 194, 209
BstMWI GCNNNNNNNGC 3 cut(s) 94, 125, 371
BstNI CCWGG 1 cut(s) 138
BstPI GGTNACC 1 cut(s) 132
BstSCI CCNGG 3 cut(s) 128, 136, 379
BstSFI CTRYAG 1 cut(s) 272
BstV2I GAAGAC 3 cut(s) 244, 270, 314
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 379
BveI ACCTGC 1 cut(s) 279
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 71, 357
CseI GACGC 1 cut(s) 308
CviAII CATG 1 cut(s) 287
CviJI RGCY 6 cut(s) 21, 28, 88, 292, 374, 379
CviKI_1 RGCY 6 cut(s) 21, 28, 88, 292, 374, 379
DdeI CTNAG 3 cut(s) 17, 29, 180
DpnI GATC 3 cut(s) 173, 196, 211
DpnII GATC 3 cut(s) 171, 194, 209
EaeI YGGCCR 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 71, 357
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 357
EcoO65I GGTNACC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 1 cut(s) 290
FaiI YATR 5 cut(s) 12, 14, 57, 253, 288
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 286
FauI CCCGC 1 cut(s) 370
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 2 cut(s) 101, 354
GluI GCNGC 1 cut(s) 95
GsaI CCCAGC 1 cut(s) 319
HaeIII GGCC 1 cut(s) 379
HapII CCGG 2 cut(s) 129, 380
HgaI GACGC 1 cut(s) 308
Hin1II CATG 1 cut(s) 290
HinfI GANTC 3 cut(s) 5, 227, 263
HpaII CCGG 2 cut(s) 129, 380
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 74, 113
Hpy188I TCNGA 2 cut(s) 52, 199
Hpy188III TCNNGA 2 cut(s) 83, 287
Hpy8I GTNNAC 2 cut(s) 74, 113
HpyAV CCTTC 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 151, 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 125, 371
HpyF3I CTNAG 3 cut(s) 17, 29, 180
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 3 cut(s) 171, 194, 209
LmnI GCTCC 3 cut(s) 52, 85, 184
LpnPI CCDG 7 cut(s) 123, 142, 150, 267, 284, 306, 329
MaeI CTAG 2 cut(s) 101, 354
MaeIII GTNAC 1 cut(s) 132
MalI GATC 3 cut(s) 173, 196, 211
MboI GATC 3 cut(s) 171, 194, 209
MboII GAAGA 5 cut(s) 208, 249, 270, 297, 314
MflI RGATCY 1 cut(s) 209
MluCI AATT 1 cut(s) 344
MlyI GAGTC 2 cut(s) 14, 236
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 5 cut(s) 61, 101, 136, 200, 319
MroXI GAANNNNTTC 1 cut(s) 262
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 2 cut(s) 129, 380
MspR9I CCNGG 3 cut(s) 130, 138, 381
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 94, 125, 371
NciI CCSGG 2 cut(s) 130, 381
NdeI CATATG 1 cut(s) 12
NdeII GATC 3 cut(s) 171, 194, 209
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 4 cut(s) 72, 87, 211, 359
NmuCI GTSAC 1 cut(s) 132
NspV TTCGAA 1 cut(s) 266
PagI TCATGA 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 2 cut(s) 13, 235
PpsI GAGTC 2 cut(s) 13, 235
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 136
PspEI GGTNACC 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 4 cut(s) 72, 87, 211, 359
PspPI GGNCC 2 cut(s) 71, 357
PspPPI RGGWCCY 1 cut(s) 357
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 28
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 3 cut(s) 171, 194, 209
Sau96I GGNCC 2 cut(s) 71, 357
SchI GAGTC 2 cut(s) 14, 236
ScrFI CCNGG 3 cut(s) 130, 138, 381
SfcI CTRYAG 1 cut(s) 272
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 2 cut(s) 71, 357
Sse9I AATT 1 cut(s) 344
SsiI CCGC 2 cut(s) 95, 363
SspMI CTAG 2 cut(s) 101, 354
StyD4I CCNGG 3 cut(s) 128, 136, 379
StyI CCWWGG 1 cut(s) 353
TaqI TCGA 2 cut(s) 66, 266
TasI AATT 1 cut(s) 344
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 263
TseFI GTSAC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 132
TspGWI ACGGA 2 cut(s) 207, 270
VpaK11BI GGWCC 2 cut(s) 71, 357
XmaJI CCTAGG 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 2 cut(s) 101, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.