RLG00000000418

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019640
Physical Location & Seq
Forward (+)
906774 .. 910567
3794 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000418

Sequence Viewer

Length: 1203 bp
ATGCGCCCCGTTCTGAAAGAAAGAGGGATCAAAAGCACACGGGTTCCTACTTCATTCATCTGTCAGTTCCGTAGCAAAAACAAGGTTGCGAAGCCGAAGGGGCTCGAAGGGCTGGTTTCTAAGAAGCCACATCTAATCCTACCCTATCTGTACTTGCTTCCTCTAACACTGCCCGCTATCCCAACTACAAAGAGAAAGAAGACGGAGAGCCTCCCGCTTGACAAGACCTTGTGGATGGAAGCCCCGGGTGCATTCGGAACCTCGCCTACTCTAATTGTTCTAGCTAACGAGCGGAAGGATTCGAACCTGCAGTCTTCAGGTCATGAGCCTGATGAGTCGACCAATTCCTCTACCCCGCTTCTTCCACTTCTCTTTCTTGTGGTAGTCATTTCGAATGAGGAAGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTAGGAGGCATCCGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTTTCCTTCCGACCTTCCAGCACCGGGCAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTTGACTATGACAACAGTCGCGACTATAAACAGACTCGCGACTATGGCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGAGTAAAGGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

45.01

Weight (kDa)

10.61

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07775
pyrus_communis pycom01g00110
rosa_laevigata RLG00000000161 RLG00000000418
rosa_multiflora Rmu_sc0013945.1_g000007
rosa_roxburghii Rroxscaffold_2G00118900 Rroxscaffold_2G00118910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
Acc36I ACCTGC 2 cut(s) 315, 731
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 2 cut(s) 338, 946
AccII CGCG 4 cut(s) 1064, 1082, 1116, 1199
AclWI GGATC 4 cut(s) 35, 464, 515, 1007
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 3 cut(s) 599, 682, 764
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 5 cut(s) 152, 463, 663, 980, 1100
AfiI CCNNNNNNNGG 3 cut(s) 546, 807, 859
AgsI TTSAA 4 cut(s) 687, 822, 1038, 1187
AjnI CCWGG 1 cut(s) 1026
AluBI AGCT 3 cut(s) 284, 429, 826
AluI AGCT 3 cut(s) 284, 429, 826
Alw21I GWGCWC 2 cut(s) 431, 877
Alw26I GTCTC 2 cut(s) 533, 703
AlwI GGATC 4 cut(s) 35, 464, 515, 1007
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 2 cut(s) 516, 1144
ApoI RAATTY 3 cut(s) 599, 682, 764
ArsI GACNNNNNNTTYG 6 cut(s) 296, 328, 625, 657, 1159, 1191
AspLEI GCGC 3 cut(s) 6, 939, 1192
AspS9I GGNCC 2 cut(s) 698, 1145
AsuC2I CCSGG 8 cut(s) 245, 246, 457, 505, 696, 809, 860, 994
AsuHPI GGTGA 3 cut(s) 684, 952, 982
AsuII TTCGAA 3 cut(s) 302, 392, 1015
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 698
AxyI CCTNAGG 2 cut(s) 776, 1150
BanII GRGCYC 3 cut(s) 105, 431, 488
BbsI GAAGAC 2 cut(s) 206, 306
Bbv12I GWGCWC 2 cut(s) 431, 877
BccI CCATC 1 cut(s) 229
BceAI ACGGC 2 cut(s) 640, 785
BciT130I CCWGG 1 cut(s) 1028
BcnI CCSGG 8 cut(s) 245, 246, 457, 505, 696, 809, 860, 994
BcoDI GTCTC 2 cut(s) 533, 703
BfaI CTAG 2 cut(s) 281, 942
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 2 cut(s) 940, 1193
BfuAI ACCTGC 2 cut(s) 315, 731
BglI GCCNNNNNGGC 1 cut(s) 100
BisI GCNGC 2 cut(s) 611, 798
BlsI GCNGC 2 cut(s) 612, 799
Bme1390I CCNGG 9 cut(s) 245, 246, 457, 505, 696, 809, 860, 994, 1028
Bme18I GGWCC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 698, 1145
BmiI GGNNCC 4 cut(s) 45, 259, 699, 1147
BmrFI CCNGG 9 cut(s) 245, 246, 457, 505, 696, 809, 860, 994, 1028
BmsI GCATC 3 cut(s) 559, 630, 678
BoxI GACNNNNGTC 2 cut(s) 525, 1058
BpiI GAAGAC 2 cut(s) 206, 306
Bpu14I TTCGAA 3 cut(s) 302, 392, 1015
BpuEI CTTGAG 1 cut(s) 917
BpuMI CCSGG 8 cut(s) 245, 246, 457, 505, 696, 809, 860, 994
BsaJI CCNNGG 4 cut(s) 243, 244, 455, 808
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bsc4I CCNNNNNNNGG 3 cut(s) 546, 807, 859
Bse1I ACTGG 2 cut(s) 540, 1193
Bse21I CCTNAGG 2 cut(s) 776, 1150
BseBI CCWGG 1 cut(s) 1028
BseDI CCNNGG 4 cut(s) 243, 244, 455, 808
BseGI GGATG 3 cut(s) 240, 550, 621
BseLI CCNNNNNNNGG 3 cut(s) 546, 807, 859
BseNI ACTGG 2 cut(s) 540, 1193
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 4 cut(s) 1064, 1082, 1116, 1199
BshFI GGCC 2 cut(s) 518, 1146
BsiHKAI GWGCWC 2 cut(s) 431, 877
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 7 cut(s) 245, 457, 505, 695, 808, 859, 993
BslFI GGGAC 2 cut(s) 512, 569
BslI CCNNNNNNNGG 3 cut(s) 546, 807, 859
BsmAI GTCTC 2 cut(s) 533, 703
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 2 cut(s) 512, 569
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 518, 1146
BsoBI CYCGRG 1 cut(s) 244
Bsp119I TTCGAA 3 cut(s) 302, 392, 1015
Bsp1286I GDGCHC 4 cut(s) 105, 431, 488, 877
Bsp143I GATC 4 cut(s) 27, 469, 507, 999
Bsp68I TCGCGA 3 cut(s) 1064, 1082, 1116
BspANI GGCC 2 cut(s) 518, 1146
BspFNI CGCG 4 cut(s) 1064, 1082, 1116, 1199
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 4 cut(s) 45, 259, 699, 1147
BspMAI CTGCAG 1 cut(s) 312
BspMI ACCTGC 2 cut(s) 315, 731
BspPI GGATC 4 cut(s) 35, 464, 515, 1007
BspT104I TTCGAA 3 cut(s) 302, 392, 1015
BsrBI CCGCTC 1 cut(s) 292
BsrI ACTGG 2 cut(s) 540, 1193
BssECI CCNNGG 4 cut(s) 243, 244, 455, 808
BssMI GATC 4 cut(s) 27, 469, 507, 999
BssNAI GTATAC 1 cut(s) 947
Bst1107I GTATAC 1 cut(s) 947
Bst2UI CCWGG 1 cut(s) 1028
Bst4CI ACNGT 3 cut(s) 784, 983, 1060
BstBI TTCGAA 3 cut(s) 302, 392, 1015
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 4 cut(s) 120, 626, 776, 1150
BstF5I GGATG 3 cut(s) 240, 550, 621
BstFNI CGCG 4 cut(s) 1064, 1082, 1116, 1199
BstH2I RGCGCY 2 cut(s) 940, 1193
BstHHI GCGC 3 cut(s) 6, 939, 1192
BstKTI GATC 4 cut(s) 30, 472, 510, 1002
BstMAI GTCTC 2 cut(s) 533, 703
BstMBI GATC 4 cut(s) 27, 469, 507, 999
BstMWI GCNNNNNNNGC 6 cut(s) 100, 109, 248, 753, 1088, 1196
BstNI CCWGG 1 cut(s) 1028
BstPAI GACNNNNGTC 2 cut(s) 525, 1058
BstSCI CCNGG 9 cut(s) 243, 244, 455, 503, 694, 807, 858, 992, 1026
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 4 cut(s) 1064, 1082, 1116, 1199
BstV2I GAAGAC 2 cut(s) 206, 306
BstZ17I GTATAC 1 cut(s) 947
Bsu36I CCTNAGG 2 cut(s) 776, 1150
BsuRI GGCC 2 cut(s) 518, 1146
BtsCI GGATG 3 cut(s) 240, 550, 621
BtsI GCAGTG 2 cut(s) 167, 586
BtsIMutI CAGTG 2 cut(s) 167, 586
BtuMI TCGCGA 3 cut(s) 1064, 1082, 1116
BveI ACCTGC 2 cut(s) 315, 731
Cac8I GCNNGC 1 cut(s) 174
CciI TCATGA 1 cut(s) 322
CfoI GCGC 3 cut(s) 6, 939, 1192
Cfr13I GGNCC 2 cut(s) 698, 1145
Cfr9I CCCGGG 1 cut(s) 244
Csp6I GTAC 5 cut(s) 151, 462, 662, 979, 1099
CviAII CATG 3 cut(s) 323, 702, 923
CviQI GTAC 5 cut(s) 151, 462, 662, 979, 1099
DdeI CTNAG 4 cut(s) 120, 626, 776, 1150
DpnI GATC 4 cut(s) 29, 471, 509, 1001
DpnII GATC 4 cut(s) 27, 469, 507, 999
EaeI YGGCCR 1 cut(s) 516
EciI GGCGGA 1 cut(s) 543
Ecl136II GAGCTC 1 cut(s) 429
Eco24I GRGCYC 3 cut(s) 105, 431, 488
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 300
Eco81I CCTNAGG 2 cut(s) 776, 1150
Eco88I CYCGRG 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 1145
EcoRI GAATTC 2 cut(s) 599, 682
EcoRII CCWGG 1 cut(s) 1026
EcoT38I GRGCYC 3 cut(s) 105, 431, 488
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 3 cut(s) 326, 705, 926
FaqI GGGAC 2 cut(s) 512, 569
FatI CATG 3 cut(s) 322, 701, 922
FauI CCCGC 5 cut(s) 181, 222, 363, 594, 708
FblI GTMKAC 2 cut(s) 338, 946
Fnu4HI GCNGC 2 cut(s) 611, 798
FokI GGATG 3 cut(s) 247, 537, 608
FriOI GRGCYC 3 cut(s) 105, 431, 488
Fsp4HI GCNGC 2 cut(s) 611, 798
FspBI CTAG 2 cut(s) 281, 942
GlaI GCGC 3 cut(s) 5, 938, 1191
GluI GCNGC 2 cut(s) 611, 798
HaeII RGCGCY 2 cut(s) 940, 1193
HaeIII GGCC 2 cut(s) 518, 1146
HapII CCGG 7 cut(s) 245, 457, 505, 695, 808, 859, 993
HhaI GCGC 3 cut(s) 6, 939, 1192
Hin1II CATG 3 cut(s) 326, 705, 926
Hin6I GCGC 3 cut(s) 4, 937, 1190
HinP1I GCGC 3 cut(s) 4, 937, 1190
HincII GTYRAC 2 cut(s) 339, 1047
HindII GTYRAC 2 cut(s) 339, 1047
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 6 cut(s) 299, 335, 413, 437, 500, 1077
HpaII CCGG 7 cut(s) 245, 457, 505, 695, 808, 859, 993
HphI GGTGA 3 cut(s) 684, 952, 982
Hpy166II GTNNAC 6 cut(s) 339, 805, 947, 960, 990, 1047
Hpy188I TCNGA 4 cut(s) 15, 257, 708, 846
Hpy188III TCNNGA 6 cut(s) 323, 648, 886, 1063, 1081, 1115
Hpy8I GTNNAC 6 cut(s) 339, 805, 947, 960, 990, 1047
Hpy99I CGWCG 2 cut(s) 422, 1171
HpyAV CCTTC 8 cut(s) 91, 101, 289, 498, 851, 859, 890, 926
HpyCH4III ACNGT 3 cut(s) 784, 983, 1060
HpyCH4V TGCA 3 cut(s) 251, 310, 740
HpyF10VI GCNNNNNNNGC 6 cut(s) 100, 109, 248, 753, 1088, 1196
HpyF3I CTNAG 4 cut(s) 120, 626, 776, 1150
Hsp92II CATG 3 cut(s) 326, 705, 926
HspAI GCGC 3 cut(s) 4, 937, 1190
Kzo9I GATC 4 cut(s) 27, 469, 507, 999
LweI GCATC 3 cut(s) 559, 630, 678
MaeI CTAG 2 cut(s) 281, 942
MaeIII GTNAC 3 cut(s) 725, 790, 891
MalI GATC 4 cut(s) 29, 471, 509, 1001
MbiI CCGCTC 1 cut(s) 292
MboI GATC 4 cut(s) 27, 469, 507, 999
MboII GAAGA 4 cut(s) 211, 306, 353, 664
MhlI GDGCHC 4 cut(s) 105, 431, 488, 877
MluCI AATT 7 cut(s) 273, 343, 599, 682, 687, 764, 1011
MlyI GAGTC 5 cut(s) 344, 407, 446, 494, 1071
MmeI TCCRAC 2 cut(s) 686, 869
MspA1I CMGCKG 1 cut(s) 715
MspI CCGG 7 cut(s) 245, 457, 505, 695, 808, 859, 993
MspR9I CCNGG 9 cut(s) 245, 246, 457, 505, 696, 809, 860, 994, 1028
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 1028
MvnI CGCG 4 cut(s) 1064, 1082, 1116, 1199
MwoI GCNNNNNNNGC 6 cut(s) 100, 109, 248, 753, 1088, 1196
NciI CCSGG 8 cut(s) 245, 246, 457, 505, 696, 809, 860, 994
NdeII GATC 4 cut(s) 27, 469, 507, 999
NlaIII CATG 3 cut(s) 326, 705, 926
NlaIV GGNNCC 4 cut(s) 45, 259, 699, 1147
NmeAIII GCCGAG 1 cut(s) 934
NruI TCGCGA 3 cut(s) 1064, 1082, 1116
NspV TTCGAA 3 cut(s) 302, 392, 1015
PagI TCATGA 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 299
PflFI GACNNNGTC 1 cut(s) 416
PfoI TCCNGGA 2 cut(s) 503, 1026
PkrI GCNGC 2 cut(s) 612, 799
PleI GAGTC 5 cut(s) 343, 407, 445, 494, 1071
PpsI GAGTC 5 cut(s) 343, 407, 445, 494, 1071
PshAI GACNNNNGTC 2 cut(s) 525, 1058
PsiI TTATAA 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 1026
PspGI CCWGG 1 cut(s) 1026
PspN4I GGNNCC 4 cut(s) 45, 259, 699, 1147
PspPI GGNCC 2 cut(s) 698, 1145
PsrI GAACNNNNNNTAC 4 cut(s) 250, 282, 971, 1003
PstI CTGCAG 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 416
RruI TCGCGA 3 cut(s) 1064, 1082, 1116
RsaI GTAC 5 cut(s) 152, 463, 663, 980, 1100
RsaNI GTAC 5 cut(s) 151, 462, 662, 979, 1099
SacI GAGCTC 1 cut(s) 431
SalI GTCGAC 1 cut(s) 337
SatI GCNGC 2 cut(s) 611, 798
Sau3AI GATC 4 cut(s) 27, 469, 507, 999
Sau96I GGNCC 2 cut(s) 698, 1145
SchI GAGTC 5 cut(s) 344, 407, 446, 494, 1071
ScrFI CCNGG 9 cut(s) 245, 246, 457, 505, 696, 809, 860, 994, 1028
SduI GDGCHC 4 cut(s) 105, 431, 488, 877
SfaNI GCATC 3 cut(s) 559, 630, 678
SfcI CTRYAG 1 cut(s) 308
SfuI TTCGAA 3 cut(s) 302, 392, 1015
SinI GGWCC 1 cut(s) 698
SmaI CCCGGG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 7 cut(s) 273, 343, 599, 682, 687, 764, 1011
SspMI CTAG 2 cut(s) 281, 942
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 9 cut(s) 243, 244, 455, 503, 694, 807, 858, 992, 1026
TaaI ACNGT 3 cut(s) 784, 983, 1060
TaqI TCGA 8 cut(s) 105, 302, 338, 392, 420, 536, 919, 1015
TasI AATT 7 cut(s) 273, 343, 599, 682, 687, 764, 1011
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 613, 800
TfiI GAWTC 1 cut(s) 299
TscAI CASTG 2 cut(s) 174, 586
TspDTI ATGAA 2 cut(s) 42, 46
TspGWI ACGGA 5 cut(s) 59, 218, 406, 462, 692
TspMI CCCGGG 1 cut(s) 244
TspRI CASTG 2 cut(s) 174, 586
Tth111I GACNNNGTC 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 698
XapI RAATTY 3 cut(s) 599, 682, 764
XmaI CCCGGG 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 338, 946
XspI CTAG 2 cut(s) 281, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.