Rroxscaffold_2G00118910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019640
Physical Location & Seq
Forward (+)
50793743 .. 50795021
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118910.1

Sequence Viewer

Length: 279 bp
ATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCCCGCTCGCGCGGTTGCTTCCCTCTAGGCGGAACGCTCCCCTACCGATGCATTTTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

11.2

Isoelectric Point (pI)

69.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07775
pyrus_communis pycom01g00110
rosa_laevigata RLG00000000161 RLG00000000418
rosa_multiflora Rmu_sc0013945.1_g000007
rosa_roxburghii Rroxscaffold_2G00118900 Rroxscaffold_2G00118910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 51
AccII CGCG 2 cut(s) 55, 57
AciI CCGC 4 cut(s) 35, 49, 57, 75
AfeI AGCGCT 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 3 cut(s) 114, 171, 273
AluI AGCT 3 cut(s) 114, 171, 273
Alw26I GTCTC 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 196
AspLEI GCGC 3 cut(s) 57, 150, 158
AspS9I GGNCC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 2 cut(s) 71, 203
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 269
Bpu1102I GCTNAGC 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 211
Bsh1236I CGCG 2 cut(s) 55, 57
BshFI GGCC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 122, 161, 254
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 4 cut(s) 35, 49, 57, 75
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 2 cut(s) 55, 57
BspLI GGNNCC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 51
BssMI GATC 3 cut(s) 122, 161, 254
Bst2UI CCWGG 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 3 cut(s) 128, 249, 269
BstF5I GGATG 1 cut(s) 104
BstFNI CGCG 2 cut(s) 55, 57
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 3 cut(s) 57, 150, 158
BstKTI GATC 3 cut(s) 125, 164, 257
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 3 cut(s) 122, 161, 254
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstUI CGCG 2 cut(s) 55, 57
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 171, 246
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 3 cut(s) 57, 150, 158
Cfr13I GGNCC 1 cut(s) 265
CviJI RGCY 8 cut(s) 19, 114, 132, 171, 196, 219, 267, 273
CviKI_1 RGCY 8 cut(s) 19, 114, 132, 171, 196, 219, 267, 273
DdeI CTNAG 3 cut(s) 128, 249, 269
DpnI GATC 3 cut(s) 124, 163, 256
DpnII GATC 3 cut(s) 122, 161, 254
EciI GGCGGA 1 cut(s) 90
Eco47III AGCGCT 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 98
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 71, 203
GlaI GCGC 3 cut(s) 56, 149, 157
GluI GCNGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 1 cut(s) 267
HhaI GCGC 3 cut(s) 57, 150, 158
Hin6I GCGC 3 cut(s) 55, 148, 156
HinP1I GCGC 3 cut(s) 55, 148, 156
Hpy166II GTNNAC 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 96, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 3 cut(s) 128, 249, 269
HspAI GCGC 3 cut(s) 55, 148, 156
Kzo9I GATC 3 cut(s) 122, 161, 254
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 3 cut(s) 201, 228, 259
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 83
MaeI CTAG 2 cut(s) 71, 203
MaeIII GTNAC 1 cut(s) 9
MalI GATC 3 cut(s) 124, 163, 256
MbiI CCGCTC 1 cut(s) 51
MboI GATC 3 cut(s) 122, 161, 254
MboII GAAGA 1 cut(s) 134
MnlI CCTC 3 cut(s) 78, 222, 247
Mph1103I ATGCAT 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 2 cut(s) 55, 57
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeII GATC 3 cut(s) 122, 161, 254
NlaIV GGNNCC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 98
PkrI GCNGC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 265
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 122, 161, 254
Sau96I GGNCC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 216
SetI ASST 5 cut(s) 116, 173, 214, 239, 275
SfaNI GCATC 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SsiI CCGC 4 cut(s) 35, 49, 57, 75
SspMI CTAG 2 cut(s) 71, 203
StyD4I CCNGG 1 cut(s) 214
TaqI TCGA 1 cut(s) 160
TscAI CASTG 2 cut(s) 171, 253
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 2 cut(s) 171, 253
XspI CTAG 2 cut(s) 71, 203
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.