Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018724

Physical Location & Seq

Genomic Coordinates Reverse (-)

4096001 .. 4096920

Gene Structure 920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G10550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTTTGTCGACACCTAAAACCCTAATGGATTTTTTTCAACCTGCCAAACGTCTCAAAGCTTCCCCTTCTTCTTCCTCCTCTTTCCCCGCCGTCTCCGTCGCCGGACGATCCCGTGATTTGGGTTCTGTAGCAAACTCGCCGCCTCGTGTAACCGTTACCACTGCGGTCGCCGATGATTCGTCTGGCCTTACACCTGAACAGGTCGCTCGCGCCGAGTTCCACAAGTTTGTCGCCAAGTCCAAGAGTAACCTCGCCGTTTGCTCCGTGAAGGTCACAAAAGCAAAAGGTTTGATCCTTATCATGGACCTGGTCAAGCTATGGGTTTATCCTTCTATGTGCCTGAAGGAGAAAAGTCCTTCTAGTCTGTTGAACATATTCAAGGAGCTTCATAAAGATGTTGGTGATAAGCTGCACATGGTGTACTTCAGAAGAAACAAGAAGGAAAATGTGTCACACGTGACGAGTTTGGCGGTTGAGGATGTGACAGGGATCACACGTACGAAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097506 GO:0097510 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 ko05340 map03410 map05340

Pfam Domains

Protein Families

UDG

Protein Analysis

170

Amino Acids

18.49

Weight (kDa)

9.93

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10550 AT3G18630
fragaria_vesca	FvH4_4g36650 FvH4_4g36650 FvH4_4g36650 FvH4_4g36650
malus_domestica	MD16G1006100.v1.1
prunus_persica	Prupe.1G344500_v2.0.a1
pyrus_communis	pycom16g00590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	90, 143, 167, 473
AclWI	GGATC	3 cut(s)	105, 289, 500
AcuI	CTGAAG	2 cut(s)	365, 412
AcvI	CACGTG	1 cut(s)	460
AdeI	CACNNNGTG	1 cut(s)	421
AfaI	GTAC	2 cut(s)	425, 502
AfiI	CCNNNNNNNGG	2 cut(s)	121, 304
AflIII	ACRYGT	2 cut(s)	457, 497
AgsI	TTSAA	3 cut(s)	41, 373, 382
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	4 cut(s)	62, 319, 388, 412
AluI	AGCT	4 cut(s)	62, 319, 388, 412
Alw26I	GTCTC	2 cut(s)	59, 100
AlwI	GGATC	3 cut(s)	105, 289, 500
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	147
BbrPI	CACGTG	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	399
BceAI	ACGGC	2 cut(s)	77, 242
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	59, 100
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	143, 413
BlsI	GCNGC	2 cut(s)	144, 414
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	311
BsaAI	YACGTR	2 cut(s)	460, 500
BsaBI	GATNNNNATC	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 304
Bse8I	GATNNNNATC	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	487
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	121, 304
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	105
BsiWI	CGTACG	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	121, 304
BsmAI	GTCTC	2 cut(s)	59, 100
BsmBI	CGTCTC	2 cut(s)	59, 100
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	110, 294, 492
BspACI	CCGC	4 cut(s)	90, 143, 167, 473
BspANI	GGCC	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	3 cut(s)	105, 289, 500
BssMI	GATC	3 cut(s)	110, 294, 492
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	157
BstBAI	YACGTR	2 cut(s)	460, 500
BstC8I	GCNNGC	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	3 cut(s)	113, 297, 495
BstMAI	GTCTC	2 cut(s)	59, 100
BstMBI	GATC	3 cut(s)	110, 294, 492
BstMCI	CGRYCG	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	307
CsiI	ACCWGGT	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	424, 501
CviAII	CATG	2 cut(s)	304, 418
CviJI	RGCY	6 cut(s)	5, 62, 189, 319, 388, 412
CviKI_1	RGCY	6 cut(s)	5, 62, 189, 319, 388, 412
CviQI	GTAC	2 cut(s)	424, 501
DpnI	GATC	3 cut(s)	112, 296, 494
DpnII	GATC	3 cut(s)	110, 294, 492
DraIII	CACNNNGTG	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	365, 412
Eco72I	CACGTG	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	309
Esp3I	CGTCTC	2 cut(s)	59, 100
FaeI	CATG	2 cut(s)	307, 421
FaiI	YATR	6 cut(s)	305, 322, 338, 377, 393, 419
FatI	CATG	2 cut(s)	303, 417
FauI	CCCGC	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	143, 413
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	2 cut(s)	143, 413
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	143, 413
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	307, 421
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	12, 424
Hpy188I	TCNGA	1 cut(s)	431
Hpy8I	GTNNAC	2 cut(s)	12, 424
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	7 cut(s)	78, 265, 340, 342, 369, 436, 499
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	3 cut(s)	52, 459, 499
HpyCH4V	TGCA	1 cut(s)	415
HpySE526I	ACGT	3 cut(s)	52, 459, 499
Hsp92II	CATG	2 cut(s)	307, 421
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	110, 294, 492
LmnI	GCTCC	2 cut(s)	269, 385
LpnPI	CCDG	9 cut(s)	57, 118, 171, 188, 210, 296, 323, 356, 474
Lsp1109I	GCAGC	1 cut(s)	399
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	3 cut(s)	52, 459, 499
MaeIII	GTNAC	7 cut(s)	151, 157, 248, 274, 453, 460, 484
MalI	GATC	3 cut(s)	112, 296, 494
MboI	GATC	3 cut(s)	110, 294, 492
MboII	GAAGA	3 cut(s)	63, 66, 444
MnlI	CCTC	5 cut(s)	88, 91, 156, 263, 472
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	1 cut(s)	511
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	213
NdeII	GATC	3 cut(s)	110, 294, 492
NlaIII	CATG	2 cut(s)	307, 421
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	4 cut(s)	274, 453, 460, 484
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	179
Pfl23II	CGTACG	1 cut(s)	500
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	144, 414
PmaCI	CACGTG	1 cut(s)	460
PmlI	CACGTG	1 cut(s)	460
Ppu21I	YACGTR	2 cut(s)	460, 500
Psp6I	CCWGG	1 cut(s)	309
PspCI	CACGTG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	309
PspLI	CGTACG	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	2 cut(s)	425, 502
RsaNI	GTAC	2 cut(s)	424, 501
RseI	CAYNNNNRTG	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	511
SatI	GCNGC	2 cut(s)	143, 413
Sau3AI	GATC	3 cut(s)	110, 294, 492
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	311
SexAI	ACCWGGT	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	396
SsiI	CCGC	4 cut(s)	90, 143, 167, 473
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	3 cut(s)	55, 462, 502
TaqI	TCGA	1 cut(s)	11
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	4 cut(s)	274, 453, 460, 484
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	4 cut(s)	274, 453, 460, 484
TspDTI	ATGAA	1 cut(s)	380
TspGWI	ACGGA	2 cut(s)	88, 256
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.