Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0018724

Physical Location & Seq

Genomic Coordinates Forward (+)

33485918 .. 33488191

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36650.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGACCTTTGCCGTTCCCGGGTTCTGTAATTTTCCCGCCAACCCATTACGAGCTTTGGCGCCAATTCACAAAGCATCCTATGATCACATCACTAGGGCAAGACGTCATTCCTTCGCCGTAGCTAATCCCAATAACGCCGCAATGGGTTCCAGACCTGCCGCCAAAAACAAAACCCTCCTCGATATCTTCCAACCCACCACCCCATCCGCCAAACGCTTCAAAGCCCAGTCTTCTTCCACCCCCAATTCCGATGACGTCACCACCGATCCTTCTTCTCCTCCGTCAGCCCTCACCGCCGAGCAGAAGTCACGCATGGAATTCCAGAAGCTGCTGGCCGGAGCCAAACGCAACCGCGCTATCTGCTCCCGGAGACTCTCCGATTCCAAGGCCAAAGGTGTGAAATTGGAGGAGCTACTGGTGGAGGACACGTGGCTGACGGCGTTGCCTTCCGAGCTGAAGAAGCCCTACGCCGTCAATCTCAGCAAGTTCGTCGAGAGCGAGATTTCCGGTGGTGCTGTTCCGATATATCCGCCGAGTCACTTGATCTTTGATGCTCTGAACTCCACCCCTTTTGATCGGGTCAAGGCTGTCATTTTGGGCCAGGACCCGTATCATGGGCCGGGTCAGGCTATGGGTCTGTCCTTCTCTGTTCCACAGGGAGTGAAGGTGCCTTCAAGCTTGGTTAATATATTCAAGGAGCTAAACAAAGATGTTGGCTGTTCAATTCCATCTCATGGAAATCTTGAGAAGTGGGCTGTTCAGGGTGTTCTGTTGCTCAATGCTGTTCTTACTGTTAGGGATCACCAGGCTAACTCTCATGCAAAGAAAGGGTGGGAACAATTTACGGATGCTGTTATCGGAACCATTTCAAAAAAGAAGGAAGGGGTTGTTTTTCTCCTGTGGGGAAACTCTGCACAGCAGAAATCCAGCTTAGTAGATGTGTCGAAGCATCACATTCTTAAGGCAGCACATCCCTCTGGTTTGTCTGCACACAGAGGCTTCTTTGGCTGCAGGCATTTTTCTCGCACGAACCAGCTTCTTGAGGAGATGGGAATTCCTCCAATCGATTGGCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097506 GO:0097510 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 ko05340 map03410 map05340

Pfam Domains

Protein Families

UDG

Protein Analysis

360

Amino Acids

39.13

Weight (kDa)

9.66

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10550 AT3G18630
fragaria_vesca	FvH4_4g36650 FvH4_4g36650 FvH4_4g36650 FvH4_4g36650
malus_domestica	MD16G1006100.v1.1
prunus_persica	Prupe.1G344500_v2.0.a1
pyrus_communis	pycom16g00590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	106, 258
Acc36I	ACCTGC	1 cut(s)	163
AccB1I	GGYRCC	2 cut(s)	58, 667
AccB7I	CCANNNNNTGG	1 cut(s)	734
AccII	CGCG	1 cut(s)	354
AciI	CCGC	7 cut(s)	36, 138, 159, 207, 294, 352, 530
AclWI	GGATC	2 cut(s)	260, 807
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	317, 1053
AcuI	CTGAAG	1 cut(s)	476
AcvI	CACGTG	1 cut(s)	429
AcyI	GRCGYC	3 cut(s)	59, 103, 255
AfiI	CCNNNNNNNGG	3 cut(s)	18, 614, 734
AflII	CTTAAG	1 cut(s)	959
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	5 cut(s)	220, 675, 694, 723, 870
AjnI	CCWGG	2 cut(s)	600, 804
AluBI	AGCT	9 cut(s)	53, 122, 328, 412, 454, 678, 700, 930, 1036
AluI	AGCT	9 cut(s)	53, 122, 328, 412, 454, 678, 700, 930, 1036
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	260, 807
AlwNI	CAGNNNCTG	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	4 cut(s)	333, 387, 598, 617
ApeKI	GCWGC	3 cut(s)	328, 965, 1008
ApoI	RAATTY	2 cut(s)	317, 1053
Asp700I	GAANNNNTTC	1 cut(s)	865
AspLEI	GCGC	2 cut(s)	61, 356
AspS9I	GGNCC	3 cut(s)	598, 604, 617
AsuC2I	CCSGG	4 cut(s)	18, 19, 367, 621
AsuHPI	GGTGA	3 cut(s)	250, 283, 794
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	604
BanI	GGYRCC	2 cut(s)	58, 667
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BbrPI	CACGTG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	315, 977, 995
BccI	CCATC	3 cut(s)	211, 736, 1042
BceAI	ACGGC	3 cut(s)	101, 453, 455
BcgI	CGANNNNNNTGC	4 cut(s)	472, 506, 1004, 1038
BciT130I	CCWGG	2 cut(s)	602, 806
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	4 cut(s)	18, 19, 367, 621
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	1009
BfoI	RGCGCY	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	959
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	5 cut(s)	138, 159, 329, 966, 1009
BlsI	GCNGC	5 cut(s)	139, 160, 330, 967, 1010
Bme1390I	CCNGG	6 cut(s)	18, 19, 367, 602, 621, 806
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	598, 604, 617
BmiI	GGNNCC	6 cut(s)	60, 148, 340, 606, 669, 862
BmrFI	CCNGG	6 cut(s)	18, 19, 367, 602, 621, 806
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	4 cut(s)	83, 541, 838, 958
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	764, 1061
BpuMI	CCSGG	4 cut(s)	18, 19, 367, 621
Bsa29I	ATCGAT	1 cut(s)	1065
BsaAI	YACGTR	1 cut(s)	429
BsaHI	GRCGYC	3 cut(s)	59, 103, 255
BsaJI	CCNNGG	2 cut(s)	17, 384
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	4 cut(s)	413, 443, 651, 681
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 614, 734
Bse1I	ACTGG	2 cut(s)	226, 420
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	602, 806
BseCI	ATCGAT	1 cut(s)	1065
BseDI	CCNNGG	2 cut(s)	17, 384
BseGI	GGATG	4 cut(s)	74, 203, 853, 970
BseLI	CCNNNNNNNGG	3 cut(s)	18, 614, 734
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	493
BseNI	ACTGG	2 cut(s)	226, 420
BseRI	GAGGAG	4 cut(s)	167, 267, 422, 1058
BseXI	GCAGC	3 cut(s)	315, 977, 995
BsgI	GTGCAG	2 cut(s)	897, 972
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	4 cut(s)	335, 389, 600, 619
BshNI	GGYRCC	2 cut(s)	58, 667
BshVI	ATCGAT	1 cut(s)	1065
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	5 cut(s)	18, 336, 367, 507, 620
BslI	CCNNNNNNNGG	3 cut(s)	18, 614, 734
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	4 cut(s)	335, 389, 600, 619
BsoBI	CYCGRG	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	82, 265, 543, 574, 799
BspACI	CCGC	7 cut(s)	36, 138, 159, 207, 294, 352, 530
BspANI	GGCC	4 cut(s)	335, 389, 600, 619
BspCNI	CTCAG	1 cut(s)	492
BspDI	ATCGAT	1 cut(s)	1065
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	6 cut(s)	60, 148, 340, 606, 669, 862
BspMAI	CTGCAG	1 cut(s)	1013
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	260, 807
BspT107I	GGYRCC	2 cut(s)	58, 667
BspTI	CTTAAG	1 cut(s)	959
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	226, 420
BssECI	CCNNGG	2 cut(s)	17, 384
BssMI	GATC	5 cut(s)	82, 265, 543, 574, 799
BssNI	GRCGYC	3 cut(s)	59, 103, 255
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	602, 806
Bst4CI	ACNGT	1 cut(s)	793
BstACI	GRCGYC	3 cut(s)	59, 103, 255
BstAFI	CTTAAG	1 cut(s)	959
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	333, 1013
BstDEI	CTNAG	2 cut(s)	479, 931
BstF5I	GGATG	4 cut(s)	74, 203, 853, 970
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	61, 356
BstKTI	GATC	5 cut(s)	85, 268, 546, 577, 802
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	5 cut(s)	82, 265, 543, 574, 799
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 360, 451, 460, 1005
BstNI	CCWGG	2 cut(s)	602, 806
BstSCI	CCNGG	6 cut(s)	16, 17, 365, 600, 619, 804
BstSFI	CTRYAG	1 cut(s)	1009
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	315, 977, 995
BstV2I	GAAGAC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	1068
Bsu15I	ATCGAT	1 cut(s)	1065
BsuRI	GGCC	4 cut(s)	335, 389, 600, 619
BsuTUI	ATCGAT	1 cut(s)	1065
BtsCI	GGATG	4 cut(s)	74, 203, 853, 970
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	333, 1013
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	2 cut(s)	61, 356
Cfr13I	GGNCC	3 cut(s)	598, 604, 617
Cfr9I	CCCGGG	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	1065
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	4 cut(s)	313, 614, 734, 818
DdeI	CTNAG	2 cut(s)	479, 931
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	5 cut(s)	84, 267, 545, 576, 801
DpnII	GATC	5 cut(s)	82, 265, 543, 574, 799
EaeI	YGGCCR	1 cut(s)	333
EciI	GGCGGA	2 cut(s)	196, 519
Eco130I	CCWWGG	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	476
Eco72I	CACGTG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRI	GAATTC	2 cut(s)	317, 1053
EcoRII	CCWGG	2 cut(s)	600, 804
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	4 cut(s)	316, 617, 737, 821
FaiI	YATR	8 cut(s)	81, 314, 526, 615, 632, 689, 735, 819
FatI	CATG	4 cut(s)	312, 613, 733, 817
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	5 cut(s)	138, 159, 329, 966, 1009
FokI	GGATG	4 cut(s)	61, 190, 860, 957
Fsp4HI	GCNGC	5 cut(s)	138, 159, 329, 966, 1009
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	2 cut(s)	60, 355
GluI	GCNGC	5 cut(s)	138, 159, 329, 966, 1009
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	4 cut(s)	335, 389, 600, 619
HapII	CCGG	5 cut(s)	18, 336, 367, 507, 620
HhaI	GCGC	2 cut(s)	61, 356
Hin1I	GRCGYC	3 cut(s)	59, 103, 255
Hin1II	CATG	4 cut(s)	316, 617, 737, 821
Hin6I	GCGC	2 cut(s)	59, 354
HinP1I	GCGC	2 cut(s)	59, 354
HindIII	AAGCTT	1 cut(s)	676
HinfI	GANTC	3 cut(s)	372, 380, 535
HpaII	CCGG	5 cut(s)	18, 336, 367, 507, 620
HphI	GGTGA	3 cut(s)	250, 283, 794
Hpy188I	TCNGA	6 cut(s)	250, 379, 451, 522, 558, 860
Hpy188III	TCNNGA	5 cut(s)	150, 322, 493, 743, 1040
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	8 cut(s)	121, 279, 456, 652, 658, 681, 871, 875
HpyCH4III	ACNGT	1 cut(s)	793
HpyCH4IV	ACGT	3 cut(s)	103, 255, 428
HpyCH4V	TGCA	4 cut(s)	821, 914, 989, 1011
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 360, 451, 460, 1005
HpyF3I	CTNAG	2 cut(s)	479, 931
HpySE526I	ACGT	3 cut(s)	103, 255, 428
Hsp92I	GRCGYC	3 cut(s)	59, 103, 255
Hsp92II	CATG	4 cut(s)	316, 617, 737, 821
HspAI	GCGC	2 cut(s)	59, 354
KasI	GGCGCC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	82, 265, 543, 574, 799
LmnI	GCTCC	4 cut(s)	338, 368, 409, 697
Lsp1109I	GCAGC	3 cut(s)	315, 977, 995
LweI	GCATC	4 cut(s)	83, 541, 838, 958
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	3 cut(s)	103, 255, 428
MaeIII	GTNAC	3 cut(s)	256, 306, 536
MalI	GATC	5 cut(s)	84, 267, 545, 576, 801
MboI	GATC	5 cut(s)	82, 265, 543, 574, 799
MboII	GAAGA	5 cut(s)	178, 222, 225, 264, 469
MluCI	AATT	8 cut(s)	28, 63, 244, 317, 401, 723, 839, 1053
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	366, 544
MmeI	TCCRAC	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	865
MseI	TTAA	2 cut(s)	684, 960
MspCI	CTTAAG	1 cut(s)	959
MspI	CCGG	5 cut(s)	18, 336, 367, 507, 620
MspR9I	CCNGG	6 cut(s)	18, 19, 367, 602, 621, 806
MvaI	CCWGG	2 cut(s)	602, 806
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	5 cut(s)	293, 360, 451, 460, 1005
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	4 cut(s)	18, 19, 367, 621
NdeII	GATC	5 cut(s)	82, 265, 543, 574, 799
NlaIII	CATG	4 cut(s)	316, 617, 737, 821
NlaIV	GGNNCC	6 cut(s)	60, 148, 340, 606, 669, 862
NmeAIII	GCCGAG	2 cut(s)	322, 558
NmuCI	GTSAC	3 cut(s)	256, 306, 536
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 495
PdmI	GAANNNNTTC	1 cut(s)	865
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	734
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	139, 160, 330, 967, 1010
PleI	GAGTC	2 cut(s)	366, 543
PluTI	GGCGCC	1 cut(s)	62
PmaCI	CACGTG	1 cut(s)	429
PmlI	CACGTG	1 cut(s)	429
PpsI	GAGTC	2 cut(s)	366, 543
Ppu21I	YACGTR	1 cut(s)	429
PpuMI	RGGWCCY	1 cut(s)	604
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	600, 804
PspCI	CACGTG	1 cut(s)	429
PspGI	CCWGG	2 cut(s)	600, 804
PspN4I	GGNNCC	6 cut(s)	60, 148, 340, 606, 669, 862
PspPI	GGNCC	3 cut(s)	598, 604, 617
PspPPI	RGGWCCY	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	1013
PstNI	CAGNNNCTG	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	684, 960
SatI	GCNGC	5 cut(s)	138, 159, 329, 966, 1009
Sau3AI	GATC	5 cut(s)	82, 265, 543, 574, 799
Sau96I	GGNCC	3 cut(s)	598, 604, 617
SchI	GAGTC	2 cut(s)	366, 544
ScrFI	CCNGG	6 cut(s)	18, 19, 367, 602, 621, 806
SfaNI	GCATC	4 cut(s)	83, 541, 838, 958
SfcI	CTRYAG	1 cut(s)	1009
SfoI	GGCGCC	1 cut(s)	60
SinI	GGWCC	1 cut(s)	604
SmaI	CCCGGG	1 cut(s)	19
SmlI	CTYRAG	3 cut(s)	743, 959, 1040
SmoI	CTYRAG	3 cut(s)	743, 959, 1040
Sse9I	AATT	8 cut(s)	28, 63, 244, 317, 401, 723, 839, 1053
SsiI	CCGC	7 cut(s)	36, 138, 159, 207, 294, 352, 530
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	6 cut(s)	16, 17, 365, 600, 619, 804
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	793
TaiI	ACGT	3 cut(s)	106, 258, 431
TaqI	TCGA	4 cut(s)	180, 492, 944, 1065
TasI	AATT	8 cut(s)	28, 63, 244, 317, 401, 723, 839, 1053
TauI	GCSGC	2 cut(s)	140, 161
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	684, 960
Tru9I	TTAA	2 cut(s)	684, 960
TseFI	GTSAC	3 cut(s)	256, 306, 536
TseI	GCWGC	3 cut(s)	328, 965, 1008
Tsp45I	GTSAC	3 cut(s)	256, 306, 536
TspGWI	ACGGA	2 cut(s)	270, 860
TspMI	CCCGGG	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	734
Vha464I	CTTAAG	1 cut(s)	959
VpaK11BI	GGWCC	1 cut(s)	604
XapI	RAATTY	2 cut(s)	317, 1053
XmaI	CCCGGG	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	865
XspI	CTAG	1 cut(s)	93
ZraI	GACGTC	2 cut(s)	104, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.