Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0018724

Physical Location & Seq

Genomic Coordinates Reverse (-)

481184 .. 484093

Gene Structure 2910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1006100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAGCTCGATCATTTTCCCCGGCGTCTGTAATCTTCCCGCCAATTCAAAAAGCACAATACGAGCGTTGGCGCCAATACACAAAGCATATCACTCTCGTCGTCTGAGCACTAGCGGCATTCCGTCGGAAAAGGAGAGAAAAATGGGTTCAACATCGAAGACCGCCGCCAAGAAAAACAAAACCCTATTCGATCTCTTCCCACCCGCCACCGCTCCCTCTGCCAAACGCTTCAAATCCGATTCCACCGCCAGTGCCGGCCACTCACTCTCGTCTACCACCAACAATGACTCCTCCGCCGCCTCCACAGACCTCACCGCCCAGCAGAAGTCACGCATCGAATTCCAAAAGCTGCTCGCCAAAGCCAGACGCAACCTCTCCACCTGTTCCAACAGAGTCTCCCATTCCAAGTCCAAAGGCGAAGGAGTGAAACTGGAGGAGCTGTTGGTGGAGGAGACGTGGCTGGAAGCGTTGCCGTCGGAGCTTCAGAAACCCTACGCCAAGACCCTCTCCAAGTTCGTTGAGAGTGAGCTCTGCGGGGGCGTTCCCATATATCCGCCCACTCACTTGATCTTCAACGCCCTCAACTCCACCTCTTTCGACAGGGTCAAGGCTGTCATCCTGGGTCAGGACCCGTATCACGGTCCGGGTCAAGCCATGGGTCTCTCTTTCTCTGTTCCTGAGGGTGTCAAGGTCCCCTCAAGTCTGGTTAATATATTCAAGGAACTGAACAAAGATCTTGGCTGTTCAATTCCATCTCATGGCAATCTTGAAAAATGGGCTGTTCAGGGTGTTCTCTTGCTCAATGCTGTTCTCACTGTTAGGAATCATCAGGCTAACTCTCATGCAAAGAAGGGATGGGAGCAATTTACCGATGCTGTTATCAAAACAATTTCACAAAAGAGGGACGGAGTTGTTTTTCTTTTGTGGGGAAACTCTGCTCAGCAGAAAATCAGGTTGATTGATGAGTCAAAGCATCACATTCTCAAAGCGGCACATCCTTCTGGTTTGTCAGCAAACAGGGGCTTCTTTGGCTGCAGGCATTTTTCTCGCACGAACCAGCTTCTGGAGGAGATGGGCATTCCTCCCATAGACTGGCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097506 GO:0097510 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 ko05340 map03410 map05340

Pfam Domains

Protein Families

UDG

Protein Analysis

368

Amino Acids

40.13

Weight (kDa)

9.7

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDG	PF03167	201 - 355	2.3e-16	Uracil DNA glycosylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10550 AT3G18630
fragaria_vesca	FvH4_4g36650 FvH4_4g36650 FvH4_4g36650 FvH4_4g36650
malus_domestica	MD16G1006100.v1.1
prunus_persica	Prupe.1G344500_v2.0.a1
pyrus_communis	pycom16g00590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccB7I	CCANNNNNTGG	3 cut(s)	758, 1063, 1092
AccBSI	CCGCTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	467
AcyI	GRCGYC	2 cut(s)	24, 71
AfiI	CCNNNNNNNGG	5 cut(s)	625, 638, 758, 1063, 1092
AgsI	TTSAA	7 cut(s)	48, 150, 232, 574, 718, 747, 770
AjiI	CACGTC	1 cut(s)	456
AjnI	CCWGG	1 cut(s)	618
AluBI	AGCT	6 cut(s)	6, 349, 439, 481, 529, 1060
AluI	AGCT	6 cut(s)	6, 349, 439, 481, 529, 1060
Alw21I	GWGCWC	3 cut(s)	8, 110, 531
Alw26I	GTCTC	3 cut(s)	400, 446, 665
AlwNI	CAGNNNCTG	1 cut(s)	1063
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	349, 1032
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	3 cut(s)	628, 641, 691
AsuC2I	CCSGG	2 cut(s)	21, 645
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	3 cut(s)	628, 641, 691
AxyI	CCTNAGG	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	8, 531
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	3 cut(s)	8, 110, 531
BbvI	GCAGC	2 cut(s)	336, 1019
BccI	CCATC	3 cut(s)	760, 849, 1066
BceAI	ACGGC	1 cut(s)	457
BcgI	CGANNNNNNTGC	2 cut(s)	1028, 1062
BciT130I	CCWGG	1 cut(s)	620
BcnI	CCSGG	2 cut(s)	21, 645
BcoDI	GTCTC	3 cut(s)	400, 446, 665
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	1033
BfoI	RGCGCY	1 cut(s)	74
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	6 cut(s)	115, 165, 297, 350, 990, 1033
BlpI	GCTNAGC	1 cut(s)	939
BlsI	GCNGC	6 cut(s)	116, 166, 298, 351, 991, 1034
Bme1390I	CCNGG	3 cut(s)	21, 620, 645
Bme18I	GGWCC	3 cut(s)	628, 641, 691
BmgBI	CACGTC	1 cut(s)	456
BmgT120I	GGNCC	3 cut(s)	628, 641, 691
BmiI	GGNNCC	3 cut(s)	72, 630, 693
BmrFI	CCNGG	3 cut(s)	21, 620, 645
BmsI	GCATC	3 cut(s)	342, 862, 982
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	2 cut(s)	452, 1085
Bpu1102I	GCTNAGC	1 cut(s)	939
BpuEI	CTTGAG	1 cut(s)	682
BpuMI	CCSGG	2 cut(s)	21, 645
BsaHI	GRCGYC	2 cut(s)	24, 71
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	3 cut(s)	19, 619, 654
BsaXI	ACNNNNNCTCC	8 cut(s)	272, 302, 380, 410, 425, 440, 455, 470
Bsc4I	CCNNNNNNNGG	5 cut(s)	625, 638, 758, 1063, 1092
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	249, 435, 1097
Bse21I	CCTNAGG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	3 cut(s)	19, 619, 654
BseGI	GGATG	3 cut(s)	615, 860, 994
BseLI	CCNNNNNNNGG	5 cut(s)	625, 638, 758, 1063, 1092
BseMII	CTCAG	3 cut(s)	95, 669, 953
BseNI	ACTGG	3 cut(s)	249, 435, 1097
BseRI	GAGGAG	4 cut(s)	280, 449, 464, 1082
BseXI	GCAGC	2 cut(s)	336, 1019
BseYI	CCCAGC	1 cut(s)	318
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	3 cut(s)	8, 110, 531
BsiSI	CCGG	3 cut(s)	21, 255, 644
BslFI	GGGAC	2 cut(s)	677, 917
BslI	CCNNNNNNNGG	5 cut(s)	625, 638, 758, 1063, 1092
BsmAI	GTCTC	3 cut(s)	400, 446, 665
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	2 cut(s)	677, 917
BsmI	GAATGC	2 cut(s)	117, 1077
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	665
Bsp1286I	GDGCHC	3 cut(s)	8, 110, 531
Bsp143I	GATC	4 cut(s)	9, 190, 567, 733
Bsp1720I	GCTNAGC	1 cut(s)	939
Bsp19I	CCATGG	1 cut(s)	654
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	96, 670, 952
BspLI	GGNNCC	3 cut(s)	72, 630, 693
BspMAI	CTGCAG	1 cut(s)	1037
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	665
BsrBI	CCGCTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	249, 435, 1097
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	19, 619, 654
BssMI	GATC	4 cut(s)	9, 190, 567, 733
BssNI	GRCGYC	2 cut(s)	24, 71
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	2 cut(s)	641, 817
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	2 cut(s)	24, 71
BstC8I	GCNNGC	3 cut(s)	256, 354, 1037
BstDEI	CTNAG	3 cut(s)	104, 678, 939
BstDSI	CCRYGG	1 cut(s)	654
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstF5I	GGATG	3 cut(s)	615, 860, 994
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	12, 193, 570, 736
BstMAI	GTCTC	3 cut(s)	400, 446, 665
BstMBI	GATC	4 cut(s)	9, 190, 567, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 218, 478, 1029
BstNI	CCWGG	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	19, 618, 643
BstSFI	CTRYAG	1 cut(s)	1033
BstV1I	GCAGC	2 cut(s)	336, 1019
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	615, 860, 994
BtsIMutI	CAGTG	2 cut(s)	256, 813
Cac8I	GCNNGC	3 cut(s)	256, 354, 1037
CaiI	CAGNNNCTG	1 cut(s)	1063
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	3 cut(s)	628, 641, 691
CpoI	CGGWCCG	1 cut(s)	641
CseI	GACGC	2 cut(s)	13, 375
CspI	CGGWCCG	1 cut(s)	641
CviAII	CATG	3 cut(s)	655, 758, 842
DdeI	CTNAG	3 cut(s)	104, 678, 939
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	4 cut(s)	11, 192, 569, 735
DpnII	GATC	4 cut(s)	9, 190, 567, 733
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	2 cut(s)	283, 543
Ecl136II	GAGCTC	2 cut(s)	6, 529
Eco130I	CCWWGG	1 cut(s)	654
Eco24I	GRGCYC	2 cut(s)	8, 531
Eco31I	GGTCTC	1 cut(s)	665
Eco47I	GGWCC	3 cut(s)	628, 641, 691
Eco53kI	GAGCTC	2 cut(s)	6, 529
Eco57I	CTGAAG	1 cut(s)	467
Eco81I	CCTNAGG	1 cut(s)	678
EcoICRI	GAGCTC	2 cut(s)	6, 529
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoO109I	RGGNCCY	2 cut(s)	628, 691
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	654
EcoT38I	GRGCYC	2 cut(s)	8, 531
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	654
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	3 cut(s)	658, 761, 845
FaiI	YATR	8 cut(s)	88, 548, 550, 656, 713, 759, 843, 1088
FaqI	GGGAC	2 cut(s)	677, 917
FatI	CATG	3 cut(s)	654, 757, 841
FauI	CCCGC	3 cut(s)	46, 211, 527
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	6 cut(s)	115, 165, 297, 350, 990, 1033
FokI	GGATG	3 cut(s)	602, 867, 981
FriOI	GRGCYC	2 cut(s)	8, 531
Fsp4HI	GCNGC	6 cut(s)	115, 165, 297, 350, 990, 1033
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	6 cut(s)	115, 165, 297, 350, 990, 1033
GsaI	CCCAGC	1 cut(s)	322
GsuI	CTGGAG	2 cut(s)	452, 1085
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	3 cut(s)	21, 255, 644
HgaI	GACGC	2 cut(s)	13, 375
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	2 cut(s)	24, 71
Hin1II	CATG	3 cut(s)	658, 761, 845
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	5 cut(s)	239, 287, 393, 823, 965
HpaII	CCGG	3 cut(s)	21, 255, 644
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	5 cut(s)	105, 127, 238, 478, 486
Hpy188III	TCNNGA	4 cut(s)	626, 677, 767, 1064
Hpy8I	GTNNAC	1 cut(s)	273
Hpy99I	CGWCG	3 cut(s)	102, 127, 478
HpyAV	CCTTC	3 cut(s)	413, 844, 1008
HpyCH4III	ACNGT	2 cut(s)	641, 817
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	2 cut(s)	845, 1035
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 218, 478, 1029
HpyF3I	CTNAG	3 cut(s)	104, 678, 939
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	2 cut(s)	24, 71
Hsp92II	CATG	3 cut(s)	658, 761, 845
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	9, 190, 567, 733
LmnI	GCTCC	4 cut(s)	217, 436, 478, 859
Lsp1109I	GCAGC	2 cut(s)	336, 1019
LweI	GCATC	3 cut(s)	342, 862, 982
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	4 cut(s)	11, 192, 569, 735
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	4 cut(s)	9, 190, 567, 733
MboII	GAAGA	4 cut(s)	26, 169, 187, 562
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	3 cut(s)	8, 110, 531
MluCI	AATT	5 cut(s)	43, 338, 747, 863, 888
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	3 cut(s)	281, 402, 974
MmeI	TCCRAC	3 cut(s)	105, 411, 456
MroNI	GCCGGC	1 cut(s)	254
MseI	TTAA	1 cut(s)	708
MspI	CCGG	3 cut(s)	21, 255, 644
MspR9I	CCNGG	3 cut(s)	21, 620, 645
Mva1269I	GAATGC	2 cut(s)	117, 1077
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	4 cut(s)	114, 218, 478, 1029
NaeI	GCCGGC	1 cut(s)	256
NarI	GGCGCC	1 cut(s)	71
NciI	CCSGG	2 cut(s)	21, 645
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	4 cut(s)	9, 190, 567, 733
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	658, 761, 845
NlaIV	GGNNCC	3 cut(s)	72, 630, 693
NmuCI	GTSAC	1 cut(s)	327
PctI	GAATGC	2 cut(s)	117, 1077
PdiI	GCCGGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	239, 823
PflFI	GACNNNGTC	1 cut(s)	602
PflMI	CCANNNNNTGG	3 cut(s)	758, 1063, 1092
PkrI	GCNGC	6 cut(s)	116, 166, 298, 351, 991, 1034
PleI	GAGTC	3 cut(s)	281, 401, 973
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	3 cut(s)	281, 401, 973
PpuMI	RGGWCCY	2 cut(s)	628, 691
Psp124BI	GAGCTC	2 cut(s)	8, 531
Psp5II	RGGWCCY	2 cut(s)	628, 691
Psp6I	CCWGG	1 cut(s)	618
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	3 cut(s)	72, 630, 693
PspPI	GGNCC	3 cut(s)	628, 641, 691
PspPPI	RGGWCCY	2 cut(s)	628, 691
PstI	CTGCAG	1 cut(s)	1037
PstNI	CAGNNNCTG	1 cut(s)	1063
PsuI	RGATCY	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	602
Rsr2I	CGGWCCG	1 cut(s)	641
RsrII	CGGWCCG	1 cut(s)	641
SacI	GAGCTC	2 cut(s)	8, 531
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	6 cut(s)	115, 165, 297, 350, 990, 1033
Sau3AI	GATC	4 cut(s)	9, 190, 567, 733
Sau96I	GGNCC	3 cut(s)	628, 641, 691
SchI	GAGTC	3 cut(s)	281, 402, 974
ScrFI	CCNGG	3 cut(s)	21, 620, 645
SduI	GDGCHC	3 cut(s)	8, 110, 531
SfaNI	GCATC	3 cut(s)	342, 862, 982
SfcI	CTRYAG	1 cut(s)	1033
SfoI	GGCGCC	1 cut(s)	72
SinI	GGWCC	3 cut(s)	628, 641, 691
SmlI	CTYRAG	1 cut(s)	697
SmoI	CTYRAG	1 cut(s)	697
Sse9I	AATT	5 cut(s)	43, 338, 747, 863, 888
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	2 cut(s)	8, 531
StyD4I	CCNGG	3 cut(s)	19, 618, 643
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	2 cut(s)	641, 817
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	5 cut(s)	8, 155, 189, 336, 597
TasI	AATT	5 cut(s)	43, 338, 747, 863, 888
TauI	GCSGC	4 cut(s)	117, 167, 299, 992
TfiI	GAWTC	2 cut(s)	239, 823
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	2 cut(s)	256, 820
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	2 cut(s)	349, 1032
Tsp45I	GTSAC	1 cut(s)	327
TspGWI	ACGGA	2 cut(s)	111, 921
TspRI	CASTG	2 cut(s)	256, 820
Tth111I	GACNNNGTC	1 cut(s)	602
Van91I	CCANNNNNTGG	3 cut(s)	758, 1063, 1092
VpaK11BI	GGWCC	3 cut(s)	628, 641, 691
XagI	CCTNNNNNAGG	1 cut(s)	623
XapI	RAATTY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.