Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0018724

Physical Location & Seq

Genomic Coordinates Forward (+)

32272745 .. 32276174

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G344500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGGTTGGTCGTTTCATTTTCCCTCGGTGTATGTCATTTTCCCGCCCATCCAAAAAGCACAATAATACGACCATTGGCGCCAATCAACAGGAAAGCTTATTTTTATGATCGAATGAGCGCAGTTCCGATGGCGTTGGAAAAAGAGCGACCAAGAAAGGAAGAAATGGGTTCCAAAAACAAAAACAAAACCCTACTGGATCTCTTCCAACCCACTGCCTCCTCCGCCAAACGCTTGAAAACCGATTCCATCAGAGCCACACACTCTGACTCTGTCTCGCCTGTACCACCACCATCCCATGATGACTCTTCCTCTTCCGACCTCACCGCCCAGCAAAAGTCACGCATGGAATTCCAGAAGCTGCTCGCCAAAGCCAGACGCAACCTGTCTATCTGCTCCAACAGACTCTCCAACTCCAACTCCAAAGGTGAAGGAGTGAAACTGGAGGAGCTACTGGTGGAGGAGACGTGGTTGGAAGCGTTCCCATCGGAGCTTCAGAAACCTTACGCCAAGACCCTCTCCAAGTTCGTCGAGAATGAGATTTGCGGCGGCGCCCTTCCCATCTACCCGCCTACTCACTTGATCTTCAACGCTCTCAACTCCACACCTTTTGACCGGGTCAAGGCTGTCATCCTGGGTCAGGACCCGTATCATGGCCCGGGTCAAGCGATGGGCCTCTCTTTCTCTGTTCCTGAGGGTGTCAAGGTTCCCTCAAGTCTCGTTAATATATTCAAGGAACTCCACCAAGATCTTGGCTGTTCAATTCCCTCTCATGGCAATCTTGAAAAATGGGCTGTTCAGGGTGTTCTCTTGCTCAATGCTGTTCTCACTGTTAGGAATCATCAGGCTAACTCTCATGCCAAGAAAGGATGGGAACAATTCACTGATGCTGTTATCAAAACAATTTCACAGAAGAGGGAAGGAGTTGTTTTTCTCCTATGGGGAAACTCTGCTCAGCAGAAATCCAAGTTGATTGATGAGTCAAAGCATCACATTCTCAAAGCGGCACATCCTTCTGGTTTGTCAGCAAACAGGGGCTTCTTTGGCTGCAGGCATTTTTCTCGCACGAACCAGCTTCTGGAGGAGATGGGTATTCCTCCCATAGACTGGCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097506 GO:0097510 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 ko05340 map03410 map05340

Pfam Domains

Protein Families

UDG

Protein Analysis

373

Amino Acids

41.36

Weight (kDa)

9.44

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10550 AT3G18630
fragaria_vesca	FvH4_4g36650 FvH4_4g36650 FvH4_4g36650 FvH4_4g36650
malus_domestica	MD16G1006100.v1.1
prunus_persica	Prupe.1G344500_v2.0.a1
pyrus_communis	pycom16g00590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	79, 551
AccB7I	CCANNNNNTGG	2 cut(s)	1078, 1107
AciI	CCGC	7 cut(s)	45, 225, 327, 546, 549, 569, 1004
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	2 cut(s)	80, 552
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	6 cut(s)	622, 640, 653, 773, 1078, 1107
AgsI	TTSAA	5 cut(s)	238, 589, 733, 762, 785
AjiI	CACGTC	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	633
AluBI	AGCT	5 cut(s)	98, 361, 451, 493, 1075
AluI	AGCT	5 cut(s)	98, 361, 451, 493, 1075
Alw26I	GTCTC	3 cut(s)	280, 458, 722
AlwI	GGATC	1 cut(s)	207
AlwNI	CAGNNNCTG	2 cut(s)	361, 1078
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	2 cut(s)	655, 673
ApeKI	GCWGC	2 cut(s)	361, 1047
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	3 cut(s)	82, 122, 554
AspS9I	GGNCC	3 cut(s)	643, 656, 673
AsuC2I	CCSGG	3 cut(s)	617, 659, 660
AsuHPI	GGTGA	2 cut(s)	316, 440
AvaI	CYCGRG	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	643
AxyI	CCTNAGG	1 cut(s)	693
BanI	GGYRCC	2 cut(s)	79, 551
BbvI	GCAGC	2 cut(s)	348, 1034
BccI	CCATC	9 cut(s)	57, 124, 257, 301, 493, 569, 664, 864, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	1043, 1077
BciT130I	CCWGG	1 cut(s)	635
BcnI	CCSGG	3 cut(s)	617, 659, 660
BcoDI	GTCTC	3 cut(s)	280, 458, 722
BfmI	CTRYAG	1 cut(s)	1048
BfoI	RGCGCY	2 cut(s)	83, 555
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	5 cut(s)	362, 547, 550, 1005, 1048
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	5 cut(s)	363, 548, 551, 1006, 1049
Bme1390I	CCNGG	4 cut(s)	617, 635, 659, 660
Bme18I	GGWCC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	658
BmgBI	CACGTC	1 cut(s)	468
BmgT120I	GGNCC	3 cut(s)	643, 656, 673
BmiI	GGNNCC	5 cut(s)	81, 172, 553, 645, 708
BmrFI	CCNGG	4 cut(s)	617, 635, 659, 660
BmsI	GCATC	2 cut(s)	877, 997
BpmI	CTGGAG	2 cut(s)	464, 1100
Bpu1102I	GCTNAGC	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	697
BpuMI	CCSGG	3 cut(s)	617, 659, 660
BsaHI	GRCGYC	2 cut(s)	80, 552
BsaJI	CCNNGG	3 cut(s)	25, 634, 658
BsaXI	ACNNNNNCTCC	8 cut(s)	392, 404, 422, 434, 452, 455, 482, 485
Bsc4I	CCNNNNNNNGG	6 cut(s)	622, 640, 653, 773, 1078, 1107
Bse1I	ACTGG	4 cut(s)	201, 447, 459, 1112
Bse21I	CCTNAGG	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	3 cut(s)	25, 634, 658
BseGI	GGATG	5 cut(s)	49, 293, 630, 875, 1009
BseLI	CCNNNNNNNGG	6 cut(s)	622, 640, 653, 773, 1078, 1107
BseMII	CTCAG	2 cut(s)	684, 968
BseNI	ACTGG	4 cut(s)	201, 447, 459, 1112
BseRI	GAGGAG	4 cut(s)	211, 461, 476, 1097
BseXI	GCAGC	2 cut(s)	348, 1034
BseYI	CCCAGC	1 cut(s)	330
BshFI	GGCC	2 cut(s)	657, 675
BshNI	GGYRCC	2 cut(s)	79, 551
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	2 cut(s)	616, 659
BslI	CCNNNNNNNGG	6 cut(s)	622, 640, 653, 773, 1078, 1107
BsmAI	GTCTC	3 cut(s)	280, 458, 722
BsmBI	CGTCTC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	657, 675
BsoBI	CYCGRG	1 cut(s)	658
Bsp143I	GATC	4 cut(s)	109, 199, 582, 748
Bsp1720I	GCTNAGC	1 cut(s)	954
BspACI	CCGC	7 cut(s)	45, 225, 327, 546, 549, 569, 1004
BspANI	GGCC	2 cut(s)	657, 675
BspCNI	CTCAG	2 cut(s)	685, 967
BspLI	GGNNCC	5 cut(s)	81, 172, 553, 645, 708
BspMAI	CTGCAG	1 cut(s)	1052
BspPI	GGATC	1 cut(s)	207
BspT107I	GGYRCC	2 cut(s)	79, 551
BsrI	ACTGG	4 cut(s)	201, 447, 459, 1112
BssECI	CCNNGG	3 cut(s)	25, 634, 658
BssMI	GATC	4 cut(s)	109, 199, 582, 748
BssNI	GRCGYC	2 cut(s)	80, 552
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	1 cut(s)	832
Bst6I	CTCTTC	4 cut(s)	209, 313, 319, 908
BstACI	GRCGYC	2 cut(s)	80, 552
BstC8I	GCNNGC	2 cut(s)	366, 1052
BstDEI	CTNAG	2 cut(s)	693, 954
BstENI	CCTNNNNNAGG	1 cut(s)	638
BstF5I	GGATG	5 cut(s)	49, 293, 630, 875, 1009
BstH2I	RGCGCY	2 cut(s)	83, 555
BstHHI	GCGC	3 cut(s)	82, 122, 554
BstKTI	GATC	4 cut(s)	112, 202, 585, 751
BstMAI	GTCTC	3 cut(s)	280, 458, 722
BstMBI	GATC	4 cut(s)	109, 199, 582, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 1044
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	4 cut(s)	615, 633, 657, 658
BstSFI	CTRYAG	1 cut(s)	1048
BstV1I	GCAGC	2 cut(s)	348, 1034
BstX2I	RGATCY	2 cut(s)	199, 748
BstXI	CCANNNNNNTGG	1 cut(s)	752
BstYI	RGATCY	2 cut(s)	199, 748
Bsu36I	CCTNAGG	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	657, 675
BtgZI	GCGATG	1 cut(s)	683
BtrI	CACGTC	1 cut(s)	468
BtsCI	GGATG	5 cut(s)	49, 293, 630, 875, 1009
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 828, 882
Cac8I	GCNNGC	2 cut(s)	366, 1052
CaiI	CAGNNNCTG	2 cut(s)	361, 1078
CfoI	GCGC	3 cut(s)	82, 122, 554
Cfr13I	GGNCC	3 cut(s)	643, 656, 673
Cfr9I	CCCGGG	1 cut(s)	658
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	5 cut(s)	299, 346, 653, 773, 857
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	693, 954
DinI	GGCGCC	2 cut(s)	81, 553
DpnI	GATC	4 cut(s)	111, 201, 584, 750
DpnII	GATC	4 cut(s)	109, 199, 582, 748
Eam1104I	CTCTTC	4 cut(s)	209, 313, 319, 908
EarI	CTCTTC	4 cut(s)	209, 313, 319, 908
EciI	GGCGGA	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	479
Eco81I	CCTNAGG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	658
EcoNI	CCTNNNNNAGG	1 cut(s)	638
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	633
EgeI	GGCGCC	2 cut(s)	81, 553
EheI	GGCGCC	2 cut(s)	81, 553
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	5 cut(s)	302, 349, 656, 776, 860
FatI	CATG	5 cut(s)	298, 345, 652, 772, 856
FauI	CCCGC	2 cut(s)	52, 576
Fnu4HI	GCNGC	5 cut(s)	362, 547, 550, 1005, 1048
FokI	GGATG	5 cut(s)	36, 280, 617, 882, 996
Fsp4HI	GCNGC	5 cut(s)	362, 547, 550, 1005, 1048
GlaI	GCGC	3 cut(s)	81, 121, 553
GluI	GCNGC	5 cut(s)	362, 547, 550, 1005, 1048
GsaI	CCCAGC	1 cut(s)	334
GsuI	CTGGAG	2 cut(s)	464, 1100
HaeII	RGCGCY	2 cut(s)	83, 555
HaeIII	GGCC	2 cut(s)	657, 675
HapII	CCGG	2 cut(s)	616, 659
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	3 cut(s)	82, 122, 554
Hin1I	GRCGYC	2 cut(s)	80, 552
Hin1II	CATG	5 cut(s)	302, 349, 656, 776, 860
Hin6I	GCGC	3 cut(s)	80, 120, 552
HinP1I	GCGC	3 cut(s)	80, 120, 552
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	6 cut(s)	245, 269, 305, 405, 838, 980
HpaII	CCGG	2 cut(s)	616, 659
HphI	GGTGA	2 cut(s)	316, 440
Hpy188I	TCNGA	6 cut(s)	129, 254, 268, 319, 490, 498
Hpy188III	TCNNGA	6 cut(s)	355, 532, 641, 692, 782, 1079
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	4 cut(s)	425, 566, 914, 1023
HpyCH4III	ACNGT	1 cut(s)	832
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	1 cut(s)	1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 1044
HpyF3I	CTNAG	2 cut(s)	693, 954
HpySE526I	ACGT	1 cut(s)	467
Hsp92I	GRCGYC	2 cut(s)	80, 552
Hsp92II	CATG	5 cut(s)	302, 349, 656, 776, 860
HspAI	GCGC	3 cut(s)	80, 120, 552
KasI	GGCGCC	2 cut(s)	79, 551
Kzo9I	GATC	4 cut(s)	109, 199, 582, 748
LmnI	GCTCC	3 cut(s)	401, 448, 490
Lsp1109I	GCAGC	2 cut(s)	348, 1034
LweI	GCATC	2 cut(s)	877, 997
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	4 cut(s)	111, 201, 584, 750
MboI	GATC	4 cut(s)	109, 199, 582, 748
MboII	GAAGA	6 cut(s)	173, 196, 300, 306, 577, 925
MflI	RGATCY	2 cut(s)	199, 748
MluCI	AATT	4 cut(s)	350, 762, 878, 903
Mly113I	GGCGCC	2 cut(s)	80, 552
MlyI	GAGTC	4 cut(s)	263, 299, 399, 989
MmeI	TCCRAC	7 cut(s)	117, 232, 342, 423, 435, 441, 453
MseI	TTAA	1 cut(s)	723
MspI	CCGG	2 cut(s)	616, 659
MspR9I	CCNGG	4 cut(s)	617, 635, 659, 660
MvaI	CCWGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	2 cut(s)	224, 1044
NarI	GGCGCC	2 cut(s)	80, 552
NciI	CCSGG	3 cut(s)	617, 659, 660
NdeII	GATC	4 cut(s)	109, 199, 582, 748
NlaIII	CATG	5 cut(s)	302, 349, 656, 776, 860
NlaIV	GGNNCC	5 cut(s)	81, 172, 553, 645, 708
NmuCI	GTSAC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	245, 838
PflFI	GACNNNGTC	2 cut(s)	272, 617
PflMI	CCANNNNNTGG	2 cut(s)	1078, 1107
PkrI	GCNGC	5 cut(s)	363, 548, 551, 1006, 1049
PleI	GAGTC	4 cut(s)	263, 299, 399, 988
PluTI	GGCGCC	2 cut(s)	83, 555
PpsI	GAGTC	4 cut(s)	263, 299, 399, 988
PpuMI	RGGWCCY	1 cut(s)	643
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	633
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	5 cut(s)	81, 172, 553, 645, 708
PspPI	GGNCC	3 cut(s)	643, 656, 673
PspPPI	RGGWCCY	1 cut(s)	643
PstI	CTGCAG	1 cut(s)	1052
PstNI	CAGNNNCTG	2 cut(s)	361, 1078
PsuI	RGATCY	2 cut(s)	199, 748
PsyI	GACNNNGTC	2 cut(s)	272, 617
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	5 cut(s)	362, 547, 550, 1005, 1048
Sau3AI	GATC	4 cut(s)	109, 199, 582, 748
Sau96I	GGNCC	3 cut(s)	643, 656, 673
SchI	GAGTC	4 cut(s)	263, 299, 399, 989
ScrFI	CCNGG	4 cut(s)	617, 635, 659, 660
SfaNI	GCATC	2 cut(s)	877, 997
SfcI	CTRYAG	1 cut(s)	1048
SfoI	GGCGCC	2 cut(s)	81, 553
SinI	GGWCC	1 cut(s)	643
SmaI	CCCGGG	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	712
SmoI	CTYRAG	1 cut(s)	712
Sse9I	AATT	4 cut(s)	350, 762, 878, 903
SsiI	CCGC	7 cut(s)	45, 225, 327, 546, 549, 569, 1004
SspDI	GGCGCC	2 cut(s)	79, 551
StyD4I	CCNGG	4 cut(s)	615, 633, 657, 658
TaaI	ACNGT	1 cut(s)	832
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	112, 531
TasI	AATT	4 cut(s)	350, 762, 878, 903
TauI	GCSGC	3 cut(s)	549, 552, 1007
TfiI	GAWTC	2 cut(s)	245, 838
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	3 cut(s)	220, 835, 889
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	2 cut(s)	361, 1047
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	6
TspMI	CCCGGG	1 cut(s)	658
TspRI	CASTG	3 cut(s)	220, 835, 889
Tth111I	GACNNNGTC	2 cut(s)	272, 617
Van91I	CCANNNNNTGG	2 cut(s)	1078, 1107
VpaK11BI	GGWCC	1 cut(s)	643
XagI	CCTNNNNNAGG	1 cut(s)	638
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmaI	CCCGGG	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.