AT3G18630

Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0018724
Physical Location & Seq
Reverse (-)
6410958 .. 6413196
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18630.1

Sequence Viewer

Length: 993 bp
ATGGCTTCGTCGACACCTAAAACCCTAATGGATTTTTTTCAACCTGCCAAACGCCTCAAAGCTTCCCCTTCTTCCTCCTCTTTCCCTGCCGTCTCCGTCGCCGGTGGTTCCCGTGATTTGGGTTCTGTAGCAAACTCGCCGCCTCGTGTAACCGTTACCACTTCCGTCGCCGATGATTCGTCTGGCCTTACACCTGAACAGATCGCTCGCGCAGAGTTCAACAAGTTCGTCGCCAAGTCCAAGCGTAACCTCGCCGTCTGCTCCGAGAGGGTCACAAAAGCAAAATCTGAAGGAAACTGCTACGTACCATTGAGTGAGCTCTTAGTAGAAGAATCATGGCTTAAAGCTCTTCCTGGGGAATTTCATAAACCCTACGCCAAATCACTTTCTGATTTCCTTGAACGTGAGATCATCACTGACAGTAAAAGCCCTCTGATTTATCCACCGCAGCACTTGATTTTCAATGCTCTTAATACAACTCCTTTTGATCGAGTTAAGACTGTCATTATCGGACAGGATCCTTATCATGGACCTGGTCAAGCTATGGGTTTGTCCTTCTCTGTACCTGAAGGAGAAAAGCTTCCTTCTAGTCTGTTGAACATCTTTAAGGAGCTTCATAAAGATGTTGGCTGTTCCATCCCACGTCACGGTAATCTACAGAAATGGGCTGTGCAGGGTGTGTTACTCCTGAATGCTGTTCTTACAGTAAGGAGTAAACAGCCTAATTCACATGCAAAGAAAGGATGGGAACAATTCACTGATGCTGTTATTCAAAGTATCTCACAGCAGAAGGAAGGTGTTGTTTTTCTTCTCTGGGGAAGATACGCTCAAGAGAAATCCAAGTTGATAGATGCGACTAAACATCATATACTCACAGCAGCTCATCCATCTGGTTTGTCGGCGAATAGAGGCTTCTTCGACTGCAGGCATTTCTCTCGCGCAAACCAGCTACTCGAGGAAATGGGGATTCCTCCCATAGACTGGCAACTTTAA

Protein Analysis

330

Amino Acids

36.29

Weight (kDa)

9.16

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDG PF03167 164 - 318 2.6e-17 Uracil DNA glycosylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018724)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10550 AT3G18630
fragaria_vesca FvH4_4g36650 FvH4_4g36650 FvH4_4g36650 FvH4_4g36650
malus_domestica MD16G1006100.v1.1
prunus_persica Prupe.1G344500_v2.0.a1
pyrus_communis pycom16g00590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 981
AccI GTMKAC 1 cut(s) 11
AccII CGCG 2 cut(s) 210, 939
AciI CCGC 2 cut(s) 140, 446
AclWI GGATC 2 cut(s) 512, 525
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 2 cut(s) 309, 588
AfaI GTAC 2 cut(s) 306, 564
AfiI CCNNNNNNNGG 4 cut(s) 118, 527, 647, 981
AgsI TTSAA 6 cut(s) 41, 220, 401, 463, 598, 773
AjiI CACGTC 1 cut(s) 644
AjnI CCWGG 2 cut(s) 352, 532
AluBI AGCT 8 cut(s) 62, 319, 347, 542, 580, 613, 881, 949
AluI AGCT 8 cut(s) 62, 319, 347, 542, 580, 613, 881, 949
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 2 cut(s) 512, 525
Ama87I CYCGRG 1 cut(s) 953
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 448, 878
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 579
AspLEI GCGC 2 cut(s) 212, 941
AspS9I GGNCC 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 953
AvaII GGWCC 1 cut(s) 530
BamHI GGATCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 321
BauI CACGAG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 460, 890
BccI CCATC 3 cut(s) 644, 738, 895
BceAI ACGGC 2 cut(s) 74, 239
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 2 cut(s) 354, 534
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 3 cut(s) 126, 656, 922
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 3 cut(s) 140, 449, 879
BlsI GCNGC 3 cut(s) 141, 450, 880
Bme1390I CCNGG 2 cut(s) 354, 534
Bme18I GGWCC 1 cut(s) 530
BmeT110I CYCGRG 1 cut(s) 953
BmgBI CACGTC 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 2 cut(s) 109, 519
BmrFI CCNGG 2 cut(s) 354, 534
BmsI GCATC 2 cut(s) 751, 841
BpuEI CTTGAG 1 cut(s) 813
BsaAI YACGTR 1 cut(s) 304
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 527, 647, 981
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 986
Bse8I GATNNNNATC 1 cut(s) 522
BseBI CCWGG 2 cut(s) 354, 534
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 3 cut(s) 636, 749, 883
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 4 cut(s) 118, 527, 647, 981
BseNI ACTGG 1 cut(s) 986
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 460, 890
BsgI GTGCAG 1 cut(s) 692
Bsh1236I CGCG 2 cut(s) 210, 939
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 953
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 4 cut(s) 118, 527, 647, 981
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 953
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 4 cut(s) 201, 408, 487, 517
BspACI CCGC 2 cut(s) 140, 446
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 2 cut(s) 210, 939
BspLI GGNNCC 2 cut(s) 109, 519
BspMAI CTGCAG 1 cut(s) 926
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 2 cut(s) 512, 525
BspQI GCTCTTC 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 986
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 4 cut(s) 201, 408, 487, 517
BssSI CACGAG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 354, 534
Bst4CI ACNGT 5 cut(s) 154, 422, 502, 650, 706
Bst6I CTCTTC 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 208, 926
BstDEI CTNAG 1 cut(s) 322
BstF5I GGATG 3 cut(s) 636, 749, 883
BstFNI CGCG 2 cut(s) 210, 939
BstHHI GCGC 2 cut(s) 212, 941
BstKTI GATC 4 cut(s) 204, 411, 490, 520
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 4 cut(s) 201, 408, 487, 517
BstNI CCWGG 2 cut(s) 354, 534
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 352, 532
BstSFI CTRYAG 3 cut(s) 126, 656, 922
BstSNI TACGTA 1 cut(s) 304
BstUI CGCG 2 cut(s) 210, 939
BstV1I GCAGC 2 cut(s) 460, 890
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 1 cut(s) 186
BtrI CACGTC 1 cut(s) 644
BtsCI GGATG 3 cut(s) 636, 749, 883
BtsIMutI CAGTG 2 cut(s) 414, 756
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 208, 926
CfoI GCGC 2 cut(s) 212, 941
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 530
CsiI ACCWGGT 1 cut(s) 532
Csp6I GTAC 2 cut(s) 305, 563
CviAII CATG 3 cut(s) 336, 527, 731
CviQI GTAC 2 cut(s) 305, 563
DdeI CTNAG 1 cut(s) 322
DpnI GATC 4 cut(s) 203, 410, 489, 519
DpnII GATC 4 cut(s) 201, 408, 487, 517
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 319
Eco105I TACGTA 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 530
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 309, 588
Eco88I CYCGRG 1 cut(s) 953
EcoICRI GAGCTC 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 352, 532
EcoT38I GRGCYC 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 3 cut(s) 339, 530, 734
FaiI YATR 9 cut(s) 337, 366, 528, 545, 618, 732, 867, 869, 977
FatI CATG 3 cut(s) 335, 526, 730
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 140, 449, 879
FokI GGATG 3 cut(s) 623, 756, 870
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 3 cut(s) 140, 449, 879
FspBI CTAG 1 cut(s) 588
GlaI GCGC 2 cut(s) 211, 940
GluI GCNGC 3 cut(s) 140, 449, 879
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 102
HhaI GCGC 2 cut(s) 212, 941
Hin1II CATG 3 cut(s) 339, 530, 734
Hin6I GCGC 2 cut(s) 210, 939
HinP1I GCGC 2 cut(s) 210, 939
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 60, 578
HinfI GANTC 3 cut(s) 176, 332, 967
HpaII CCGG 1 cut(s) 102
Hpy166II GTNNAC 2 cut(s) 12, 716
Hpy188I TCNGA 5 cut(s) 265, 289, 391, 435, 512
Hpy188III TCNNGA 2 cut(s) 688, 830
Hpy8I GTNNAC 2 cut(s) 12, 716
Hpy99I CGWCG 4 cut(s) 13, 101, 170, 233
HpyAV CCTTC 7 cut(s) 78, 284, 563, 565, 594, 784, 788
HpyCH4III ACNGT 5 cut(s) 154, 422, 502, 650, 706
HpyCH4IV ACGT 3 cut(s) 303, 403, 643
HpyCH4V TGCA 3 cut(s) 673, 734, 924
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 3 cut(s) 303, 403, 643
Hsp92II CATG 3 cut(s) 339, 530, 734
HspAI GCGC 2 cut(s) 210, 939
Kzo9I GATC 4 cut(s) 201, 408, 487, 517
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 266, 610
Lsp1109I GCAGC 2 cut(s) 460, 890
LweI GCATC 2 cut(s) 751, 841
MabI ACCWGGT 1 cut(s) 532
MaeI CTAG 1 cut(s) 588
MaeII ACGT 3 cut(s) 303, 403, 643
MaeIII GTNAC 6 cut(s) 148, 154, 245, 271, 644, 681
MalI GATC 4 cut(s) 203, 410, 489, 519
MboI GATC 4 cut(s) 201, 408, 487, 517
MboII GAAGA 6 cut(s) 63, 341, 341, 800, 831, 907
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 3 cut(s) 359, 724, 752
MroXI GAANNNNTTC 1 cut(s) 579
MseI TTAA 5 cut(s) 342, 471, 495, 606, 991
MslI CAYNNNNRTG 1 cut(s) 621
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 354, 534
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 2 cut(s) 354, 534
MvnI CGCG 2 cut(s) 210, 939
NdeII GATC 4 cut(s) 201, 408, 487, 517
NlaIII CATG 3 cut(s) 339, 530, 734
NlaIV GGNNCC 2 cut(s) 109, 519
NmuCI GTSAC 2 cut(s) 271, 644
NspI RCATGY 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 953
PciSI GCTCTTC 1 cut(s) 354
PctI GAATGC 1 cut(s) 697
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 3 cut(s) 176, 332, 967
PflFI GACNNNGTC 1 cut(s) 534
PflMI CCANNNNNTGG 1 cut(s) 981
PkrI GCNGC 3 cut(s) 141, 450, 880
Ppu21I YACGTR 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 352, 532
PspGI CCWGG 2 cut(s) 352, 532
PspN4I GGNNCC 2 cut(s) 109, 519
PspPI GGNCC 1 cut(s) 530
PspXI VCTCGAGB 1 cut(s) 953
PstI CTGCAG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 517
PsyI GACNNNGTC 1 cut(s) 534
RsaI GTAC 2 cut(s) 306, 564
RsaNI GTAC 2 cut(s) 305, 563
RseI CAYNNNNRTG 1 cut(s) 621
SacI GAGCTC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 5 cut(s) 342, 471, 495, 606, 991
SatI GCNGC 3 cut(s) 140, 449, 879
Sau3AI GATC 4 cut(s) 201, 408, 487, 517
Sau96I GGNCC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 354, 534
SduI GDGCHC 1 cut(s) 321
SexAI ACCWGGT 1 cut(s) 532
SfaNI GCATC 2 cut(s) 751, 841
SfcI CTRYAG 3 cut(s) 126, 656, 922
Sfr274I CTCGAG 1 cut(s) 953
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 530
SlaI CTCGAG 1 cut(s) 953
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 2 cut(s) 828, 953
SmoI CTYRAG 2 cut(s) 828, 953
SnaBI TACGTA 1 cut(s) 304
Sse9I AATT 3 cut(s) 359, 724, 752
SsiI CCGC 2 cut(s) 140, 446
SspMI CTAG 1 cut(s) 588
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 352, 532
TaaI ACNGT 5 cut(s) 154, 422, 502, 650, 706
TaiI ACGT 3 cut(s) 306, 406, 646
TaqI TCGA 4 cut(s) 11, 490, 918, 954
TasI AATT 3 cut(s) 359, 724, 752
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 3 cut(s) 176, 332, 967
Tru1I TTAA 5 cut(s) 342, 471, 495, 606, 991
Tru9I TTAA 5 cut(s) 342, 471, 495, 606, 991
TscAI CASTG 2 cut(s) 421, 763
TseFI GTSAC 2 cut(s) 271, 644
TseI GCWGC 2 cut(s) 448, 878
Tsp45I GTSAC 2 cut(s) 271, 644
TspDTI ATGAA 2 cut(s) 353, 605
TspGWI ACGGA 2 cut(s) 85, 154
TspRI CASTG 2 cut(s) 421, 763
Tth111I GACNNNGTC 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 981
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 734
XhoI CTCGAG 1 cut(s) 953
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 579
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.