AT2G13350

C2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011068
Physical Location & Seq
Reverse (-)
5536220 .. 5537951
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G13350.1

Sequence Viewer

Length: 1206 bp
ATGTCTTTTCTTGCGCCTTGTCAAATTTTGGAGCTGAATATTATTTCGGCCCAAGAATTGGCGCCCGTGGCACGGTGTATGAAGACATATGCAATCGCTTGGATTGATCCAGAGCGTAAATTGACGACTCGGGTCGACAATACGGGCGGAACAAGCCCTACATGGAACGACAAGTTTGTGTTTCGTCTAGATGAGGAAGCACTCTACGATGCCACATCAATAGTTGTTATAGAGATCTATGCATTGCATTGGTTCAAAGACATTCATGTTGGAACGGTACAAGCCTTAATAAGTGACCTTGTAAGCCCTTCTTCGGCTATGAGATTCGTTACCCTAGAGGTTCTTCGTGCCTCGGGCCGCCCCCACGGCCTCCTAAACATTGCGGTGGGGCTTATCGATAACTCAGGCCAAAGCATGCCTCTTTTGTTTGAAGAAGATTTGTTGTTTCACAAGAAAAACATATCTTCAAAACCCGTAGGGCTTCGACGGTCAAAAAGTGATACAAGCTCAATGGTGGATTCACCAAGGAAGGTGACACAATCCCGTGTGAGTTCTACTACAAACTCAGGATTTGATAAAGATGAGTTTTCTTCTGACTCTCAAATGGTTGTGTATGAGCCCCAAAGAAAAACGCCGAATACAATGAGGCAAACAAAGCAACAACTCGTGTATGGGACACCGATGAGGCCAAGGAAAACGACAGCATATACCCCCAAAAGGAACACAATCGAATATGGAACACCAATGAGGTCAAGACCAATCGTTATTACAGAATCTGACTTAGGTCCTTCAGCCTCAGTAGTTGCTGCCCAAATAGCAAAAGAGAAAGCACTTACAGGGAAAGATGCGGAGAGTACTGTGATAAGTGTTGGTGAACGAAGTGTCGAGGGTCTTCGTTCTAAGTTAGAAAGATGGCAAGCCAATTTACCAGTGGTTTTAGACGTGGGGTCAAGTTATCAACCAAGTTCTGACTACAAAACAAACTCTAACTTTAACCCTAAATCAAGTTACAAGCCTAACGAAATCGTCCCAAGAAATCCTCAAATGATTGGAGCTCCCATCCAAAAGCCAAGTGGGAGGAACAAGAAAAGTGGAGATAACGGATTGTTTTCATGTTTTGGTAACATTTGTGGCATTGAGTGTTCTATTGTTTGTGGTGGCTCTAGTGGACAAAAAGCAGCCAAGAAGAAGAAGAAAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

401

Amino Acids

44.16

Weight (kDa)

9.51

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 9 - 108 1.2e-10 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G13350 AT3G04360
fragaria_vesca FvH4_6g01610
malus_domestica MD00G1149000.v1.1 MD04G1232000.v1.1
prunus_persica Prupe.6G351400_v2.0.a1
pyrus_communis pycom04g20540 pycom12g22960
rosa_chinensis RchiOBHm_Chr3g0449421
rosa_laevigata RLG00000025832
rosa_multiflora Rmu_sc0019012.1_g000008 Rmu_sc0019478.1_g000001 Rmu_sc0020017.1_g000003
rosa_roxburghii Rroxscaffold_6G00427380
rosa_rugosa Rorug02G0620500
rosa_samantha Rh3AG018300 Rh3BG018600 Rh3CG017500 Rh3DG019000
rosa_wichuraiana Rw3G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 58
AccI GTMKAC 1 cut(s) 135
AciI CCGC 4 cut(s) 147, 358, 383, 848
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 279, 856
AfiI CCNNNNNNNGG 4 cut(s) 58, 72, 313, 717
AgsI TTSAA 3 cut(s) 256, 431, 468
AhdI GACNNNNNGTC 1 cut(s) 946
AjiI CACGTC 1 cut(s) 943
AluBI AGCT 3 cut(s) 34, 507, 1055
AluI AGCT 3 cut(s) 34, 507, 1055
Alw21I GWGCWC 1 cut(s) 1057
AlwI GGATC 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 776
Ama87I CYCGRG 2 cut(s) 129, 352
AoxI GGCC 5 cut(s) 48, 355, 367, 406, 686
ApeKI GCWGC 2 cut(s) 806, 1178
ApoI RAATTY 1 cut(s) 24
AspLEI GCGC 2 cut(s) 16, 64
AspS9I GGNCC 3 cut(s) 49, 355, 785
AsuHPI GGTGA 3 cut(s) 513, 544, 884
AvaI CYCGRG 2 cut(s) 129, 352
AvaII GGWCC 1 cut(s) 785
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 621, 1057
BauI CACGAG 1 cut(s) 665
BbsI GAAGAC 2 cut(s) 89, 884
Bbv12I GWGCWC 1 cut(s) 1057
BbvI GCAGC 2 cut(s) 793, 1190
BccI CCATC 2 cut(s) 906, 1067
BceAI ACGGC 1 cut(s) 382
BfaI CTAG 3 cut(s) 188, 335, 1164
BfoI RGCGCY 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 366
BglII AGATCT 1 cut(s) 234
BisI GCNGC 3 cut(s) 358, 807, 1179
BlsI GCNGC 3 cut(s) 359, 808, 1180
BmcAI AGTACT 1 cut(s) 856
Bme18I GGWCC 1 cut(s) 785
BmeRI GACNNNNNGTC 1 cut(s) 946
BmeT110I CYCGRG 2 cut(s) 129, 352
BmgBI CACGTC 1 cut(s) 943
BmgT120I GGNCC 3 cut(s) 49, 355, 785
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 2 cut(s) 199, 835
BoxI GACNNNNGTC 2 cut(s) 131, 783
BpiI GAAGAC 2 cut(s) 89, 884
Bsa29I ATCGAT 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 5 cut(s) 66, 351, 364, 524, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 72, 313, 717
Bse1I ACTGG 1 cut(s) 929
Bse3DI GCAATG 2 cut(s) 242, 378
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 5 cut(s) 66, 351, 364, 524, 689
BseGI GGATG 1 cut(s) 1059
BseLI CCNNNNNNNGG 4 cut(s) 58, 72, 313, 717
BseMI GCAATG 2 cut(s) 242, 378
BseMII CTCAG 3 cut(s) 417, 579, 810
BseNI ACTGG 1 cut(s) 929
BseXI GCAGC 2 cut(s) 793, 1190
BshFI GGCC 5 cut(s) 50, 357, 369, 408, 688
BshNI GGYRCC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 1057
BsiHKCI CYCGRG 2 cut(s) 129, 352
BslFI GGGAC 2 cut(s) 688, 1013
BslI CCNNNNNNNGG 4 cut(s) 58, 72, 313, 717
BsmFI GGGAC 2 cut(s) 688, 1013
BsnI GGCC 5 cut(s) 50, 357, 369, 408, 688
BsoBI CYCGRG 2 cut(s) 129, 352
Bsp1286I GDGCHC 2 cut(s) 621, 1057
Bsp143I GATC 2 cut(s) 106, 234
BspACI CCGC 4 cut(s) 147, 358, 383, 848
BspANI GGCC 5 cut(s) 50, 357, 369, 408, 688
BspCNI CTCAG 3 cut(s) 416, 578, 809
BspDI ATCGAT 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 61
BsrDI GCAATG 2 cut(s) 242, 378
BsrI ACTGG 1 cut(s) 929
BssECI CCNNGG 5 cut(s) 66, 351, 364, 524, 689
BssMI GATC 2 cut(s) 106, 234
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 665
BssT1I CCWWGG 2 cut(s) 524, 689
Bst2BI CACGAG 1 cut(s) 665
Bst4CI ACNGT 4 cut(s) 75, 277, 489, 859
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 416, 918
BstDEI CTNAG 5 cut(s) 403, 565, 781, 796, 900
BstDSI CCRYGG 2 cut(s) 66, 364
BstF5I GGATG 1 cut(s) 1059
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 2 cut(s) 16, 64
BstKTI GATC 2 cut(s) 109, 237
BstMBI GATC 2 cut(s) 106, 234
BstMWI GCNNNNNNNGC 5 cut(s) 68, 153, 366, 655, 815
BstNSI RCATGY 1 cut(s) 418
BstPAI GACNNNNGTC 2 cut(s) 131, 783
BstV1I GCAGC 2 cut(s) 793, 1190
BstV2I GAAGAC 2 cut(s) 89, 884
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 5 cut(s) 50, 357, 369, 408, 688
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 2 cut(s) 66, 364
BtrI CACGTC 1 cut(s) 943
BtsCI GGATG 1 cut(s) 1059
BtsIMutI CAGTG 1 cut(s) 936
Cac8I GCNNGC 2 cut(s) 416, 918
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 2 cut(s) 16, 64
Cfr13I GGNCC 3 cut(s) 49, 355, 785
ClaI ATCGAT 1 cut(s) 396
Csp6I GTAC 2 cut(s) 278, 855
CspCI CAANNNNNGTGG 2 cut(s) 1072, 1107
CviAII CATG 4 cut(s) 162, 266, 415, 1113
CviQI GTAC 2 cut(s) 278, 855
DdeI CTNAG 5 cut(s) 403, 565, 781, 796, 900
DinI GGCGCC 1 cut(s) 63
DpnI GATC 2 cut(s) 108, 236
DpnII GATC 2 cut(s) 106, 234
DriI GACNNNNNGTC 1 cut(s) 946
Eam1105I GACNNNNNGTC 1 cut(s) 946
EciI GGCGGA 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 1055
Eco130I CCWWGG 2 cut(s) 524, 689
Eco24I GRGCYC 2 cut(s) 621, 1057
Eco47I GGWCC 1 cut(s) 785
Eco53kI GAGCTC 1 cut(s) 1055
Eco57I CTGAAG 1 cut(s) 774
Eco88I CYCGRG 2 cut(s) 129, 352
EcoICRI GAGCTC 1 cut(s) 1055
EcoO109I RGGNCCY 1 cut(s) 785
EcoT14I CCWWGG 2 cut(s) 524, 689
EcoT22I ATGCAT 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 621, 1057
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 524, 689
FaeI CATG 4 cut(s) 165, 269, 418, 1116
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 2 cut(s) 688, 1013
FatI CATG 4 cut(s) 161, 265, 414, 1112
FauNDI CATATG 1 cut(s) 88
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 358, 807, 1179
FokI GGATG 1 cut(s) 1046
FriOI GRGCYC 2 cut(s) 621, 1057
Fsp4HI GCNGC 3 cut(s) 358, 807, 1179
FspBI CTAG 3 cut(s) 188, 335, 1164
GlaI GCGC 2 cut(s) 15, 63
GluI GCNGC 3 cut(s) 358, 807, 1179
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 5 cut(s) 50, 357, 369, 408, 688
HhaI GCGC 2 cut(s) 16, 64
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 165, 269, 418, 1116
Hin6I GCGC 2 cut(s) 14, 62
HinP1I GCGC 2 cut(s) 14, 62
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 5 cut(s) 127, 324, 518, 596, 773
HphI GGTGA 3 cut(s) 513, 544, 884
Hpy166II GTNNAC 3 cut(s) 136, 875, 1169
Hpy188I TCNGA 3 cut(s) 595, 778, 970
Hpy188III TCNNGA 4 cut(s) 110, 188, 567, 753
Hpy8I GTNNAC 3 cut(s) 136, 875, 1169
Hpy99I CGWCG 1 cut(s) 489
HpyAV CCTTC 3 cut(s) 318, 523, 798
HpyCH4III ACNGT 4 cut(s) 75, 277, 489, 859
HpyCH4IV ACGT 1 cut(s) 942
HpyCH4V TGCA 3 cut(s) 92, 242, 247
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 153, 366, 655, 815
HpyF3I CTNAG 5 cut(s) 403, 565, 781, 796, 900
HpySE526I ACGT 1 cut(s) 942
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 165, 269, 418, 1116
HspAI GCGC 2 cut(s) 14, 62
KasI GGCGCC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 106, 234
LmnI GCTCC 3 cut(s) 31, 1052, 1060
LpnPI CCDG 5 cut(s) 123, 390, 552, 822, 942
Lsp1109I GCAGC 2 cut(s) 793, 1190
LweI GCATC 2 cut(s) 199, 835
MaeI CTAG 3 cut(s) 188, 335, 1164
MaeII ACGT 1 cut(s) 942
MaeIII GTNAC 5 cut(s) 293, 328, 532, 1007, 1121
MalI GATC 2 cut(s) 108, 236
MboI GATC 2 cut(s) 106, 234
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 2 cut(s) 621, 1057
MluCI AATT 4 cut(s) 24, 56, 119, 922
Mly113I GGCGCC 1 cut(s) 62
MlyI GAGTC 2 cut(s) 121, 590
MmeI TCCRAC 1 cut(s) 250
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 2 cut(s) 287, 993
MslI CAYNNNNRTG 1 cut(s) 383
MwoI GCNNNNNNNGC 5 cut(s) 68, 153, 366, 655, 815
NarI GGCGCC 1 cut(s) 62
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 106, 234
NlaIII CATG 4 cut(s) 165, 269, 418, 1116
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 293, 532
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 1 cut(s) 418
PaeI GCATGC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 324, 518, 773
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 3 cut(s) 359, 808, 1180
PleI GAGTC 2 cut(s) 121, 590
PluTI GGCGCC 1 cut(s) 65
PpsI GAGTC 2 cut(s) 121, 590
PpuMI RGGWCCY 1 cut(s) 785
PshAI GACNNNNGTC 2 cut(s) 131, 783
Psp124BI GAGCTC 1 cut(s) 1057
Psp5II RGGWCCY 1 cut(s) 785
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 3 cut(s) 49, 355, 785
PspPPI RGGWCCY 1 cut(s) 785
PsrI GAACNNNNNNTAC 2 cut(s) 142, 174
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 2 cut(s) 279, 856
RsaNI GTAC 2 cut(s) 278, 855
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 1057
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 287, 993
SatI GCNGC 3 cut(s) 358, 807, 1179
Sau3AI GATC 2 cut(s) 106, 234
Sau96I GGNCC 3 cut(s) 49, 355, 785
ScaI AGTACT 1 cut(s) 856
SchI GAGTC 2 cut(s) 121, 590
SduI GDGCHC 2 cut(s) 621, 1057
SetI ASST 9 cut(s) 36, 300, 342, 509, 534, 752, 787, 945, 1057
SfaNI GCATC 2 cut(s) 199, 835
SfoI GGCGCC 1 cut(s) 63
SinI GGWCC 1 cut(s) 785
SmiMI CAYNNNNRTG 1 cut(s) 383
SphI GCATGC 1 cut(s) 418
Sse9I AATT 4 cut(s) 24, 56, 119, 922
SsiI CCGC 4 cut(s) 147, 358, 383, 848
SspDI GGCGCC 1 cut(s) 61
SspI AATATT 1 cut(s) 40
SspMI CTAG 3 cut(s) 188, 335, 1164
SstI GAGCTC 1 cut(s) 1057
StyI CCWWGG 2 cut(s) 524, 689
TaaI ACNGT 4 cut(s) 75, 277, 489, 859
TaiI ACGT 1 cut(s) 945
TaqI TCGA 5 cut(s) 135, 396, 484, 729, 885
TasI AATT 4 cut(s) 24, 56, 119, 922
TatI WGTACW 1 cut(s) 854
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 3 cut(s) 324, 518, 773
Tru1I TTAA 2 cut(s) 287, 993
Tru9I TTAA 2 cut(s) 287, 993
TscAI CASTG 1 cut(s) 936
TseFI GTSAC 2 cut(s) 293, 532
TseI GCWGC 2 cut(s) 806, 1178
Tsp45I GTSAC 2 cut(s) 293, 532
TspDTI ATGAA 3 cut(s) 95, 254, 1101
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 1 cut(s) 936
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 785
XapI RAATTY 1 cut(s) 24
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 2 cut(s) 928, 1070
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 3 cut(s) 188, 335, 1164
ZrmI AGTACT 1 cut(s) 856
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.