AT2G15240

Protein unc-50 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014148
Physical Location & Seq
Reverse (-)
6615456 .. 6619074
3619 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15240.1

Sequence Viewer

Length: 759 bp
ATGTTGCCCACAACTTCCAGATCTCGTTCTTCATCTTCTTCATCCCGAGCTAATCCAATGTTCCTTCAGTACTTTCGTCGTATCGTTAAGTGGCAGCAAATGGATGTTGAATATACTTTCTGGCAAATGCTTAACCTTTGTACATCTCCGAAAGTTGTCTATCAACACACTAAGTATCACAAACAAACTAAGAACCAATGGGCACGTGATGACCCTGCGTTTATTGTGATCTGTAGCCTGCTTCTTGTTGTTGCAACTGTAGCCTATTGTGTCACGTATGACCATAGTAGCTCTCATGCCGTCGTCGTAGTCGTTTCAGTTTTGTTCACCCATTTCTTAATCACCGGAGCAGTTATAGCTACATGCTGTTGGTTTTTGACAAATTCTTACCTTCGCGAGGAGACTCCAAACAGTCATGTGGTGGAACAACGCGTTGAATGGCTGTATACATTTGATGTTCACTGCAACTCGTTCTTTCCAATGTTTGTGCTGCTCTACGTCGTACATTACTTCTTATCACCGCTCCTGATAGCACACGGATTCATCCCTTTACTGCTATCGAATCTGCTTTTCATGGTCGGGGCTTCGTACTACCATTATCTTAACTTCCTAGGATATGACGTGCTTCCATTTTTGGAGCGAACAACATTCTTCCTCTACCCAATCGGAGTTGTCATTGTCCTGTCTCCTATTCTTATCTTAAGCGGATTCAACCCGTCAAGATATTTCATGAACATGTACTTCAGCCAAAGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-50

Protein Analysis

252

Amino Acids

29.43

Weight (kDa)

8.7

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UNC-50 PF05216 24 - 248 1.1e-86 UNC-50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15240
fragaria_vesca FvH4_2g05170
malus_domestica MD05G1089700.v1.1 MD10G1096900.v1.1
prunus_persica Prupe.8G135000_v2.0.a1 Prupe.8G135000_v2.0.a1
pyrus_communis pycom05g08880 pycom10g08300
rosa_chinensis RchiOBHm_Chr6g0255081
rosa_laevigata RLG00000014853
rosa_multiflora Rmu_sc0004590.1_g000003
rosa_roxburghii Rroxscaffold_7G00210190
rosa_rugosa Rorug05G0557000 Rorug05G0557100
rosa_samantha Rh6BG066600 Rh6CG066200
rosa_wichuraiana Rw6G006490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 757
AccBSI CCGCTC 1 cut(s) 523
AccI GTMKAC 1 cut(s) 446
AccII CGCG 2 cut(s) 396, 432
AciI CCGC 2 cut(s) 521, 705
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 2 cut(s) 50, 727
AcvI CACGTG 1 cut(s) 206
AfaI GTAC 5 cut(s) 71, 142, 504, 590, 740
AfiI CCNNNNNNNGG 1 cut(s) 397
AflII CTTAAG 1 cut(s) 700
AflIII ACRYGT 2 cut(s) 430, 735
AgsI TTSAA 3 cut(s) 110, 437, 712
AjiI CACGTC 1 cut(s) 622
AluBI AGCT 3 cut(s) 50, 291, 359
AluI AGCT 3 cut(s) 50, 291, 359
Alw26I GTCTC 2 cut(s) 395, 690
Ama87I CYCGRG 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 94, 490
ApoI RAATTY 1 cut(s) 382
AspA2I CCTAGG 1 cut(s) 610
AsuHPI GGTGA 3 cut(s) 319, 334, 510
AvaI CYCGRG 1 cut(s) 45
AvrII CCTAGG 1 cut(s) 610
BaeGI GKGCMC 1 cut(s) 205
BbrPI CACGTG 1 cut(s) 206
BbvI GCAGC 2 cut(s) 106, 477
BceAI ACGGC 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 395, 690
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 2 cut(s) 232, 258
BfrI CTTAAG 1 cut(s) 700
BglII AGATCT 1 cut(s) 20
BisI GCNGC 2 cut(s) 95, 491
BlnI CCTAGG 1 cut(s) 610
BlsI GCNGC 2 cut(s) 96, 492
BmcAI AGTACT 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 622
BsaAI YACGTR 2 cut(s) 206, 276
BsaJI CCNNGG 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 610
BseGI GGATG 3 cut(s) 41, 109, 543
BseLI CCNNNNNNNGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 2 cut(s) 106, 477
Bsh1236I CGCG 2 cut(s) 396, 432
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 2 cut(s) 395, 690
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 2 cut(s) 20, 228
Bsp68I TCGCGA 1 cut(s) 396
BspACI CCGC 2 cut(s) 521, 705
BspFNI CGCG 2 cut(s) 396, 432
BspHI TCATGA 1 cut(s) 729
BspTI CTTAAG 1 cut(s) 700
BsrBI CCGCTC 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 610
BssMI GATC 2 cut(s) 20, 228
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 610
Bst1107I GTATAC 1 cut(s) 447
Bst4CI ACNGT 2 cut(s) 259, 413
BstAFI CTTAAG 1 cut(s) 700
BstAUI TGTACA 1 cut(s) 140
BstBAI YACGTR 2 cut(s) 206, 276
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 171, 189
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 3 cut(s) 41, 109, 543
BstFNI CGCG 2 cut(s) 396, 432
BstKTI GATC 2 cut(s) 23, 231
BstMAI GTCTC 2 cut(s) 395, 690
BstMBI GATC 2 cut(s) 20, 228
BstMWI GCNNNNNNNGC 2 cut(s) 260, 356
BstNSI RCATGY 2 cut(s) 366, 739
BstSFI CTRYAG 2 cut(s) 232, 258
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 2 cut(s) 396, 432
BstV1I GCAGC 2 cut(s) 106, 477
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BstZ17I GTATAC 1 cut(s) 447
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 3 cut(s) 41, 109, 543
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 460
BtuMI TCGCGA 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 239
CciI TCATGA 1 cut(s) 729
Csp6I GTAC 5 cut(s) 70, 141, 503, 589, 739
CviAII CATG 6 cut(s) 296, 363, 416, 574, 730, 736
CviJI RGCY 8 cut(s) 50, 237, 263, 291, 359, 442, 584, 747
CviKI_1 RGCY 8 cut(s) 50, 237, 263, 291, 359, 442, 584, 747
CviQI GTAC 5 cut(s) 70, 141, 503, 589, 739
DdeI CTNAG 2 cut(s) 171, 189
DpnI GATC 2 cut(s) 22, 230
DpnII GATC 2 cut(s) 20, 228
Eco130I CCWWGG 1 cut(s) 610
Eco57I CTGAAG 2 cut(s) 50, 727
Eco72I CACGTG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 610
FaeI CATG 6 cut(s) 299, 366, 419, 577, 733, 739
FatI CATG 6 cut(s) 295, 362, 415, 573, 729, 735
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 2 cut(s) 95, 491
FokI GGATG 3 cut(s) 28, 116, 530
Fsp4HI GCNGC 2 cut(s) 95, 491
FspBI CTAG 1 cut(s) 611
GluI GCNGC 2 cut(s) 95, 491
HapII CCGG 1 cut(s) 345
Hin1II CATG 6 cut(s) 299, 366, 419, 577, 733, 739
HinfI GANTC 4 cut(s) 403, 540, 562, 708
HpaII CCGG 1 cut(s) 345
HphI GGTGA 3 cut(s) 319, 334, 510
Hpy166II GTNNAC 3 cut(s) 327, 447, 460
Hpy188I TCNGA 2 cut(s) 150, 668
Hpy188III TCNNGA 6 cut(s) 18, 45, 395, 526, 720, 730
Hpy8I GTNNAC 3 cut(s) 327, 447, 460
Hpy99I CGWCG 4 cut(s) 81, 305, 308, 503
HpyAV CCTTC 2 cut(s) 74, 401
HpyCH4III ACNGT 2 cut(s) 259, 413
HpyCH4IV ACGT 4 cut(s) 205, 275, 498, 621
HpyCH4V TGCA 2 cut(s) 254, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 356
HpyF3I CTNAG 2 cut(s) 171, 189
HpySE526I ACGT 4 cut(s) 205, 275, 498, 621
Hsp92II CATG 6 cut(s) 299, 366, 419, 577, 733, 739
Kzo9I GATC 2 cut(s) 20, 228
LmnI GCTCC 3 cut(s) 347, 528, 637
LpnPI CCDG 7 cut(s) 31, 106, 228, 251, 358, 539, 695
Lsp1109I GCAGC 2 cut(s) 106, 477
MaeI CTAG 1 cut(s) 611
MaeII ACGT 4 cut(s) 205, 275, 498, 621
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 22, 230
MbiI CCGCTC 1 cut(s) 523
MboI GATC 2 cut(s) 20, 228
MboII GAAGA 4 cut(s) 21, 27, 30, 643
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 382
MluI ACGCGT 1 cut(s) 430
MlyI GAGTC 1 cut(s) 397
MnlI CCTC 2 cut(s) 391, 665
MseI TTAA 5 cut(s) 87, 132, 338, 603, 701
MslI CAYNNNNRTG 1 cut(s) 734
MspCI CTTAAG 1 cut(s) 700
MspI CCGG 1 cut(s) 345
MvnI CGCG 2 cut(s) 396, 432
MwoI GCNNNNNNNGC 2 cut(s) 260, 356
NdeII GATC 2 cut(s) 20, 228
NlaIII CATG 6 cut(s) 299, 366, 419, 577, 733, 739
NmuCI GTSAC 1 cut(s) 271
NruI TCGCGA 1 cut(s) 396
NspI RCATGY 2 cut(s) 366, 739
PagI TCATGA 1 cut(s) 729
PciI ACATGT 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PfeI GAWTC 3 cut(s) 540, 562, 708
PkrI GCNGC 2 cut(s) 96, 492
PleI GAGTC 1 cut(s) 397
PmaCI CACGTG 1 cut(s) 206
PmlI CACGTG 1 cut(s) 206
PpsI GAGTC 1 cut(s) 397
Ppu21I YACGTR 2 cut(s) 206, 276
PscI ACATGT 1 cut(s) 735
PsiI TTATAA 1 cut(s) 757
PspCI CACGTG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 20
RruI TCGCGA 1 cut(s) 396
RsaI GTAC 5 cut(s) 71, 142, 504, 590, 740
RsaNI GTAC 5 cut(s) 70, 141, 503, 589, 739
RseI CAYNNNNRTG 1 cut(s) 734
SaqAI TTAA 5 cut(s) 87, 132, 338, 603, 701
SatI GCNGC 2 cut(s) 95, 491
Sau3AI GATC 2 cut(s) 20, 228
ScaI AGTACT 1 cut(s) 71
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 1 cut(s) 205
SfcI CTRYAG 2 cut(s) 232, 258
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 1 cut(s) 382
SsiI CCGC 2 cut(s) 521, 705
SspMI CTAG 1 cut(s) 611
StyI CCWWGG 1 cut(s) 610
TaaI ACNGT 2 cut(s) 259, 413
TaiI ACGT 4 cut(s) 208, 278, 501, 624
TaqI TCGA 1 cut(s) 560
TasI AATT 1 cut(s) 382
TatI WGTACW 3 cut(s) 69, 140, 738
TfiI GAWTC 3 cut(s) 540, 562, 708
Tru1I TTAA 5 cut(s) 87, 132, 338, 603, 701
Tru9I TTAA 5 cut(s) 87, 132, 338, 603, 701
TscAI CASTG 1 cut(s) 467
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 94, 490
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 6 cut(s) 21, 30, 532, 562, 718, 746
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 1 cut(s) 467
Vha464I CTTAAG 1 cut(s) 700
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 1 cut(s) 382
XceI RCATGY 2 cut(s) 366, 739
XmaJI CCTAGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 611
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.