pycom05g08880

Protein unc-50 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014148
Physical Location & Seq
Forward (+)
11655251 .. 11659974
4724 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08880.10

Sequence Viewer

Length: 765 bp
ATGTTGCCCACAACGTCGAGAGGGCGGTCGTCGTCCTCTGCATCTCGGACGAACCCCATGTTCATTCAGTACCTTCGGCGAATAATCAAGTGGCAACAAATGGATATTGAATATACATTTTGGCAAATGCTTCACCTATGCACCTCACCGAAAGTTGTCTATCAGCACACTAAGTATCACAAGCAAACTAAGAATCAATGGGCACGTGACGACCCTGCTTTTGTTGTAATCTGCAGCCTTCTACTTGCTGTTGCAACTCTGGCATATTGTGCTGCGTACGACCATAGTGCTGCACATGCTGTTTTTGTAGTTATTTCTGTTTTGCTTTTTCATTTTTTGTTCCTCGGGATGCTTCTGGCTACATTTTGTTGGTTTTTAACTAATTCTTACCTTCGTGAAGAGGCTCCGAATAGCCATGTTGTTGAGCAGCGTGTTGAATGGCTGTACGCATTTGATGTCCACTGCAACTCTTTCTTCCCGATGTTTGTTCTGGTTTATGTGATCCATTATTTTCTATCACCAATTTTGGTAGCTCATGGCTTCATTCCGGTATTGCTATCAAATTTGATATTCATGGTGGCCACTTCATACTATCATTATCTCAACTTCTTAGGTTATGATGTACTGCCCTTTCTGGAGAGGACCACTTTCTTCCTATATCCAATCAGTGTCGTCATTGTCCTCTCTCCGATCTTGATTTTGAGTGGCTTCAATCCTTCAAGATATTTTATGAACATGTACTTTAGTCAACGAGTATGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-50

Protein Analysis

255

Amino Acids

29.82

Weight (kDa)

8.76

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15240
fragaria_vesca FvH4_2g05170
malus_domestica MD05G1089700.v1.1 MD10G1096900.v1.1
prunus_persica Prupe.8G135000_v2.0.a1 Prupe.8G135000_v2.0.a1
pyrus_communis pycom05g08880 pycom10g08300
rosa_chinensis RchiOBHm_Chr6g0255081
rosa_laevigata RLG00000014853
rosa_multiflora Rmu_sc0004590.1_g000003
rosa_roxburghii Rroxscaffold_7G00210190
rosa_rugosa Rorug05G0557000 Rorug05G0557100
rosa_samantha Rh6BG066600 Rh6CG066200
rosa_wichuraiana Rw6G006490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 1 cut(s) 562
AcvI CACGTG 1 cut(s) 206
AfaI GTAC 5 cut(s) 71, 278, 446, 624, 740
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 4 cut(s) 110, 437, 712, 720
AluBI AGCT 1 cut(s) 533
AluI AGCT 1 cut(s) 533
AlwI GGATC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 1 cut(s) 579
ApeKI GCWGC 4 cut(s) 234, 272, 290, 427
ApoI RAATTY 1 cut(s) 562
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspS9I GGNCC 1 cut(s) 642
AsuHPI GGTGA 3 cut(s) 125, 138, 510
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 642
BaeGI GKGCMC 1 cut(s) 205
BalI TGGCCA 1 cut(s) 581
BbrPI CACGTG 1 cut(s) 206
BbvI GCAGC 4 cut(s) 246, 259, 277, 439
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BfmI CTRYAG 1 cut(s) 232
BisI GCNGC 4 cut(s) 235, 273, 291, 428
BlsI GCNGC 4 cut(s) 236, 274, 292, 429
Bme18I GGWCC 1 cut(s) 642
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 1 cut(s) 405
BmsI GCATC 2 cut(s) 50, 339
BpmI CTGGAG 1 cut(s) 656
BsaAI YACGTR 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 343
BsaWI WCCGGW 1 cut(s) 547
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 4 cut(s) 246, 259, 277, 439
BsgI GTGCAG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 581
BsiEI CGRYCG 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 548
BsiWI CGTACG 1 cut(s) 276
BsnI GGCC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 501, 690
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 581
BspLI GGNNCC 1 cut(s) 405
BspMAI CTGCAG 1 cut(s) 236
BspPI GGATC 1 cut(s) 496
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 2 cut(s) 501, 690
Bst6I CTCTTC 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 206
BstDEI CTNAG 3 cut(s) 171, 189, 610
BstF5I GGATG 1 cut(s) 354
BstKTI GATC 2 cut(s) 504, 693
BstMBI GATC 2 cut(s) 501, 690
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 3 cut(s) 260, 269, 296
BstNSI RCATGY 2 cut(s) 299, 739
BstSFI CTRYAG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 4 cut(s) 246, 259, 277, 439
BsuRI GGCC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 354
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 2 cut(s) 460, 673
Cfr13I GGNCC 1 cut(s) 642
Csp6I GTAC 5 cut(s) 70, 277, 445, 623, 739
CviAII CATG 6 cut(s) 58, 296, 416, 536, 574, 736
CviJI RGCY 9 cut(s) 237, 359, 404, 414, 442, 533, 540, 581, 708
CviKI_1 RGCY 9 cut(s) 237, 359, 404, 414, 442, 533, 540, 581, 708
CviQI GTAC 5 cut(s) 70, 277, 445, 623, 739
DdeI CTNAG 3 cut(s) 171, 189, 610
DpnI GATC 2 cut(s) 503, 692
DpnII GATC 2 cut(s) 501, 690
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 642
Eco72I CACGTG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 344
FaeI CATG 6 cut(s) 61, 299, 419, 539, 577, 739
FatI CATG 6 cut(s) 57, 295, 415, 535, 573, 735
Fnu4HI GCNGC 4 cut(s) 235, 273, 291, 428
FokI GGATG 1 cut(s) 361
Fsp4HI GCNGC 4 cut(s) 235, 273, 291, 428
GluI GCNGC 4 cut(s) 235, 273, 291, 428
GsuI CTGGAG 1 cut(s) 656
HaeIII GGCC 1 cut(s) 581
HapII CCGG 1 cut(s) 548
Hin1II CATG 6 cut(s) 61, 299, 419, 539, 577, 739
HincII GTYRAC 1 cut(s) 749
HindII GTYRAC 1 cut(s) 749
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 548
HphI GGTGA 3 cut(s) 125, 138, 510
Hpy166II GTNNAC 2 cut(s) 460, 749
Hpy188I TCNGA 3 cut(s) 48, 408, 690
Hpy188III TCNNGA 7 cut(s) 18, 346, 395, 478, 635, 694, 720
Hpy8I GTNNAC 2 cut(s) 460, 749
Hpy99I CGWCG 2 cut(s) 19, 34
HpyAV CCTTC 4 cut(s) 83, 248, 401, 726
HpyCH4IV ACGT 2 cut(s) 14, 205
HpyCH4V TGCA 6 cut(s) 41, 141, 234, 254, 293, 465
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 269, 296
HpyF3I CTNAG 3 cut(s) 171, 189, 610
HpySE526I ACGT 2 cut(s) 14, 205
Hsp92II CATG 6 cut(s) 61, 299, 419, 539, 577, 739
Kzo9I GATC 2 cut(s) 501, 690
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 6 cut(s) 228, 245, 341, 476, 561, 620
Lsp1109I GCAGC 4 cut(s) 246, 259, 277, 439
LweI GCATC 2 cut(s) 50, 339
MaeII ACGT 2 cut(s) 14, 205
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 503, 692
MboI GATC 2 cut(s) 501, 690
MboII GAAGA 3 cut(s) 410, 466, 643
MhlI GDGCHC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 3 cut(s) 382, 522, 562
MluNI TGGCCA 1 cut(s) 581
MnlI CCTC 7 cut(s) 14, 46, 154, 353, 394, 633, 692
Mox20I TGGCCA 1 cut(s) 581
MscI TGGCCA 1 cut(s) 581
MseI TTAA 2 cut(s) 377, 763
Msp20I TGGCCA 1 cut(s) 581
MspI CCGG 1 cut(s) 548
MwoI GCNNNNNNNGC 3 cut(s) 260, 269, 296
NdeII GATC 2 cut(s) 501, 690
NlaIII CATG 6 cut(s) 61, 299, 419, 539, 577, 739
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 206
NspI RCATGY 2 cut(s) 299, 739
PciI ACATGT 1 cut(s) 735
PfeI GAWTC 1 cut(s) 193
Pfl23II CGTACG 1 cut(s) 276
PkrI GCNGC 4 cut(s) 236, 274, 292, 429
PmaCI CACGTG 1 cut(s) 206
PmlI CACGTG 1 cut(s) 206
Ppu21I YACGTR 1 cut(s) 206
PscI ACATGT 1 cut(s) 735
PspCI CACGTG 1 cut(s) 206
PspLI CGTACG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 642
PstI CTGCAG 1 cut(s) 236
RsaI GTAC 5 cut(s) 71, 278, 446, 624, 740
RsaNI GTAC 5 cut(s) 70, 277, 445, 623, 739
SaqAI TTAA 2 cut(s) 377, 763
SatI GCNGC 4 cut(s) 235, 273, 291, 428
Sau3AI GATC 2 cut(s) 501, 690
Sau96I GGNCC 1 cut(s) 642
SduI GDGCHC 1 cut(s) 205
SetI ASST 8 cut(s) 17, 75, 138, 146, 208, 393, 535, 616
SfaNI GCATC 2 cut(s) 50, 339
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 642
Sse9I AATT 3 cut(s) 382, 522, 562
SsiI CCGC 1 cut(s) 25
TaiI ACGT 2 cut(s) 17, 208
TaqI TCGA 1 cut(s) 17
TasI AATT 3 cut(s) 382, 522, 562
TatI WGTACW 2 cut(s) 622, 738
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 377, 763
Tru9I TTAA 2 cut(s) 377, 763
TscAI CASTG 2 cut(s) 467, 673
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 4 cut(s) 234, 272, 290, 427
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 6 cut(s) 52, 320, 532, 562, 576, 746
TspRI CASTG 2 cut(s) 467, 673
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 1 cut(s) 562
XceI RCATGY 2 cut(s) 299, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.