AT2G19880

Glycosyl transferase family 21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014355
Physical Location & Seq
Forward (+)
8581088 .. 8585500
4413 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19880.2

Sequence Viewer

Length: 1560 bp
ATGTCTACATTGGACTCCATTGATGCGATTCTCTTCTCTCTTAGCAGAGCTTTTACAAGCCCTTTCGCTGTCTTCGTTCAGATCCAGGGGTGTACAATATGCTTACTACTTGCTCTCGGCTGGTTATTGGCTGAATATGTCAGGAATCGTGAGGTTAAGAGAATTAAAAACAGCATAAAAGCGGGCAATAGCTTGGCGTTTCTTTATCAAGATATCAATGAACTTGAGCACTCTAGGCAGGTTAAACTTCCTAGAGTTTCAGTTGTCATGCCTCTAAAAGGTTTTGGAGAACACAATTTACACAACTGGAGAAGTCAGATTACTTCTCTCTATGGTGGGCCATTGGAATTCCTTTTTGTTGTAGAAAGTACGGAAGACCCTGCATATCACGCTGTTTCCCGTCTATTATCTATGTATCAGGATCATGTTGAAGCTAAGGTCGTGGTTGCTGGTTTATCAACAACATGTAGCCAGAAAATTCATAATCAGTTGATTGGAGTTGAAAAAATGCACAAAGATACCAAATATGTGTTATTTTTGGATGATGATGTTAGACTGCATCCTGGAACAATCGGAGCTCTCACGACTGAGATGGAGAAAAATCCAGAGATATTTATTCAAACTGGGTATCCTCTAGACTTGCCGTCTGGGACTCTTGGGAGTTATTGCATCTATGAGTACCACATGCCTTGCTCAATGGGATTTGCGACTGGTGGAAGAACATTCTTTTTGTGGGGAGGATGTATGATGATGCATGCTGATGATTTCAGACAAGATCGGTACGGTGTTGTCTCTGGCTTACGTGATGGTGGATATTCAGATGATATGACACTTGCCTCTCTAGCAGGTGCTCATAAGAGGCTCATTACATCTCCTCCTGTTGCTGTTTTCCCTCACCCTCTCGCGAGTGATCTAAGTTTTGGACGATACTGGAACTACTTGAGAAAACAAACCTTTGTGCTAGAATCATACATATCGAAAGTTAACTGGATAATGAACAAGGCTTTGTTTGCTGTCCATTGTTATCTTTCATGGGGTTTTGTTGCACCATATGTTATGGCTATCATTCACATCACATCAGCTTTAAGAATCTACATCAAGGGCTATCATCAACTTGAAGACACGACCTCTGCTTCTGGTATGATGCTTGTTATAACGTTGGCGATCTGCACCTTCATCGAGCTTCTGTCAATGTGGAATTTGACGAGACGAGAAGTTCAGCTATGCAATATGTTATCCCCTGAGGCTCCCCGTCTCTCTCTTGCAACTTACAACTGGGGACTTGTTTTTGTAGCAATGCTTGTAGACAACTTCCTATATCCGATATCAGCTTTCCGGTCTCATTTTTCTCAATCCATAAACTGGTCTGGAATCAGATACCACTTGAAAGATGGAAAGATATTCAAGATTGAGAGACGAAAGGATATGGGACCAACAAAGACTGATTTAGGAGGCAAACATTTGTATGGTAAGAAAGGAGCTCCTCAGAAAGCTTCATTCTTAAGCTCATTGGGAAGAAATTTGGCTCACTGGCGACAACCGAAAAAATTCGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_21

Protein Analysis

519

Amino Acids

58.71

Weight (kDa)

9.0

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19880 AT2G19880
fragaria_vesca FvH4_1g06110
malus_domestica MD02G1065600.v1.1 MD15G1196500.v1.1
prunus_persica Prupe.7G219900_v2.0.a1 Prupe.7G219900_v2.0.a1
pyrus_communis pycom02g05170 pycom15g17560
rosa_chinensis RchiOBHm_Chr2g0091861
rosa_laevigata RLG00000016258
rosa_multiflora Rmu_sc0010910.1_g000001
rosa_roxburghii Rroxscaffold_2G00149660
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066600 Rh2DG065600
rosa_wichuraiana Rw2G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1154
AarI CACCTGC 1 cut(s) 836
Acc36I ACCTGC 2 cut(s) 229, 836
AccB7I CCANNNNNTGG 1 cut(s) 1362
AccI GTMKAC 2 cut(s) 5, 1305
AccII CGCG 1 cut(s) 905
AciI CCGC 1 cut(s) 182
AclI AACGTT 1 cut(s) 1157
AclWI GGATC 2 cut(s) 76, 429
AcsI RAATTY 5 cut(s) 347, 477, 1198, 1519, 1547
AfaI GTAC 4 cut(s) 94, 370, 680, 782
AfiI CCNNNNNNNGG 2 cut(s) 278, 1362
AflII CTTAAG 1 cut(s) 1501
AflIII ACRYGT 1 cut(s) 464
AgsI TTSAA 6 cut(s) 431, 503, 620, 1118, 1387, 1405
AhdI GACNNNNNGTC 1 cut(s) 643
AjnI CCWGG 2 cut(s) 84, 562
Alw21I GWGCWC 4 cut(s) 231, 580, 853, 1483
Alw26I GTCTC 5 cut(s) 796, 1201, 1259, 1344, 1408
AlwI GGATC 2 cut(s) 76, 429
AoxI GGCC 1 cut(s) 338
ApoI RAATTY 5 cut(s) 347, 477, 1198, 1519, 1547
Asp700I GAANNNNTTC 1 cut(s) 1547
AspS9I GGNCC 2 cut(s) 338, 1430
AsuHPI GGTGA 1 cut(s) 887
AvaII GGWCC 1 cut(s) 1430
AxyI CCTNAGG 1 cut(s) 1242
BanII GRGCYC 2 cut(s) 580, 1483
BarI GAAGNNNNNNTAC 2 cut(s) 304, 336
BbsI GAAGAC 3 cut(s) 64, 381, 1125
Bbv12I GWGCWC 4 cut(s) 231, 580, 853, 1483
BccI CCATC 3 cut(s) 586, 800, 1385
BceAI ACGGC 1 cut(s) 628
BcgI CGANNNNNNTGC 2 cut(s) 1159, 1193
BciT130I CCWGG 2 cut(s) 86, 564
BciVI GTATCC 1 cut(s) 639
BcoDI GTCTC 5 cut(s) 796, 1201, 1259, 1344, 1408
BfaI CTAG 5 cut(s) 234, 252, 635, 842, 962
BfrI CTTAAG 1 cut(s) 1501
BfuAI ACCTGC 2 cut(s) 229, 836
BfuI GTATCC 1 cut(s) 639
Bme1390I CCNGG 2 cut(s) 86, 564
Bme18I GGWCC 1 cut(s) 1430
BmeRI GACNNNNNGTC 1 cut(s) 643
BmgT120I GGNCC 2 cut(s) 338, 1430
BmiI GGNNCC 2 cut(s) 1248, 1431
BmrFI CCNGG 2 cut(s) 86, 564
BmrI ACTGGG 2 cut(s) 633, 1285
BmsI GCATC 5 cut(s) 13, 568, 678, 741, 1134
BmuI ACTGGG 2 cut(s) 633, 1285
BpiI GAAGAC 3 cut(s) 64, 381, 1125
BpmI CTGGAG 1 cut(s) 328
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 2 cut(s) 245, 961
BsaAI YACGTR 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 1344
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 1335
BsaXI ACNNNNNCTCC 2 cut(s) 859, 889
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 1362
Bse1I ACTGG 8 cut(s) 311, 628, 715, 935, 992, 1280, 1367, 1535
Bse21I CCTNAGG 1 cut(s) 1242
Bse3DI GCAATG 1 cut(s) 1302
BseBI CCWGG 2 cut(s) 86, 564
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 3 cut(s) 547, 559, 746
BseLI CCNNNNNNNGG 2 cut(s) 278, 1362
BseMI GCAATG 1 cut(s) 1302
BseMII CTCAG 3 cut(s) 579, 1233, 1499
BseNI ACTGG 8 cut(s) 311, 628, 715, 935, 992, 1280, 1367, 1535
BseRI GAGGAG 2 cut(s) 864, 1473
BsgI GTGCAG 1 cut(s) 1153
Bsh1236I CGCG 1 cut(s) 905
BshFI GGCC 1 cut(s) 340
BsiHKAI GWGCWC 4 cut(s) 231, 580, 853, 1483
BsiSI CCGG 1 cut(s) 1336
BslFI GGGAC 3 cut(s) 664, 1293, 1443
BslI CCNNNNNNNGG 2 cut(s) 278, 1362
BsmAI GTCTC 5 cut(s) 796, 1201, 1259, 1344, 1408
BsmBI CGTCTC 3 cut(s) 1201, 1259, 1408
BsmFI GGGAC 3 cut(s) 664, 1293, 1443
BsnI GGCC 1 cut(s) 340
Bso31I GGTCTC 1 cut(s) 1344
Bsp1286I GDGCHC 4 cut(s) 231, 580, 853, 1483
Bsp1407I TGTACA 1 cut(s) 92
Bsp143I GATC 5 cut(s) 81, 421, 775, 910, 1164
Bsp68I TCGCGA 1 cut(s) 905
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 3 cut(s) 580, 1234, 1498
BspFNI CGCG 1 cut(s) 905
BspLI GGNNCC 2 cut(s) 1248, 1431
BspMI ACCTGC 2 cut(s) 229, 836
BspPI GGATC 2 cut(s) 76, 429
BspTI CTTAAG 1 cut(s) 1501
BspTNI GGTCTC 1 cut(s) 1344
BsrDI GCAATG 1 cut(s) 1302
BsrGI TGTACA 1 cut(s) 92
BsrI ACTGG 8 cut(s) 311, 628, 715, 935, 992, 1280, 1367, 1535
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 5 cut(s) 81, 421, 775, 910, 1164
Bst2UI CCWGG 2 cut(s) 86, 564
Bst4CI ACNGT 1 cut(s) 785
Bst6I CTCTTC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 1501
BstAUI TGTACA 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 2 cut(s) 184, 756
BstDEI CTNAG 6 cut(s) 41, 435, 588, 914, 1242, 1485
BstENI CCTNNNNNAGG 1 cut(s) 276
BstF5I GGATG 3 cut(s) 547, 559, 746
BstFNI CGCG 1 cut(s) 905
BstKTI GATC 5 cut(s) 84, 424, 778, 913, 1167
BstMAI GTCTC 5 cut(s) 796, 1201, 1259, 1344, 1408
BstMBI GATC 5 cut(s) 81, 421, 775, 910, 1164
BstMWI GCNNNNNNNGC 4 cut(s) 235, 389, 842, 1010
BstNI CCWGG 2 cut(s) 86, 564
BstNSI RCATGY 3 cut(s) 468, 688, 758
BstSCI CCNGG 2 cut(s) 84, 562
BstUI CGCG 1 cut(s) 905
BstV2I GAAGAC 3 cut(s) 64, 381, 1125
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
Bsu36I CCTNAGG 1 cut(s) 1242
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 1 cut(s) 340
BtsCI GGATG 3 cut(s) 547, 559, 746
BtsIMutI CAGTG 1 cut(s) 1528
BtuMI TCGCGA 1 cut(s) 905
BveI ACCTGC 2 cut(s) 229, 836
Cac8I GCNNGC 2 cut(s) 184, 756
Cfr13I GGNCC 2 cut(s) 338, 1430
Csp6I GTAC 4 cut(s) 93, 369, 679, 781
CspCI CAANNNNNGTGG 2 cut(s) 671, 706
CviAII CATG 6 cut(s) 268, 425, 465, 685, 755, 1032
CviQI GTAC 4 cut(s) 93, 369, 679, 781
DdeI CTNAG 6 cut(s) 41, 435, 588, 914, 1242, 1485
DpnI GATC 5 cut(s) 83, 423, 777, 912, 1166
DpnII GATC 5 cut(s) 81, 421, 775, 910, 1164
DriI GACNNNNNGTC 1 cut(s) 643
Eam1104I CTCTTC 1 cut(s) 38
Eam1105I GACNNNNNGTC 1 cut(s) 643
EarI CTCTTC 1 cut(s) 38
Ecl136II GAGCTC 2 cut(s) 578, 1481
Eco24I GRGCYC 2 cut(s) 580, 1483
Eco31I GGTCTC 1 cut(s) 1344
Eco32I GATATC 2 cut(s) 214, 1326
Eco47I GGWCC 1 cut(s) 1430
Eco53kI GAGCTC 2 cut(s) 578, 1481
Eco81I CCTNAGG 1 cut(s) 1242
EcoICRI GAGCTC 2 cut(s) 578, 1481
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 84, 562
EcoRV GATATC 2 cut(s) 214, 1326
EcoT22I ATGCAT 1 cut(s) 756
EcoT38I GRGCYC 2 cut(s) 580, 1483
Esp3I CGTCTC 3 cut(s) 1201, 1259, 1408
FaeI CATG 6 cut(s) 271, 428, 468, 688, 758, 1035
FaqI GGGAC 3 cut(s) 664, 1293, 1443
FatI CATG 6 cut(s) 267, 424, 464, 684, 754, 1031
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 1051
FblI GTMKAC 2 cut(s) 5, 1305
FokI GGATG 3 cut(s) 546, 554, 753
FriOI GRGCYC 2 cut(s) 580, 1483
FspBI CTAG 5 cut(s) 234, 252, 635, 842, 962
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 1 cut(s) 340
HapII CCGG 1 cut(s) 1336
Hin1II CATG 6 cut(s) 271, 428, 468, 688, 758, 1035
HincII GTYRAC 1 cut(s) 985
HindII GTYRAC 1 cut(s) 985
HindIII AAGCTT 1 cut(s) 1491
HinfI GANTC 7 cut(s) 14, 28, 145, 652, 965, 1089, 1371
HpaI GTTAAC 1 cut(s) 985
HpaII CCGG 1 cut(s) 1336
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 4 cut(s) 6, 93, 985, 1306
Hpy188I TCNGA 8 cut(s) 81, 318, 575, 770, 820, 1323, 1376, 1488
Hpy8I GTNNAC 4 cut(s) 6, 93, 985, 1306
HpyAV CCTTC 1 cut(s) 1183
HpyCH4III ACNGT 1 cut(s) 785
HpyCH4IV ACGT 2 cut(s) 802, 1157
HpyCH4V TGCA 9 cut(s) 383, 511, 559, 669, 754, 1046, 1170, 1227, 1265
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 389, 842, 1010
HpyF3I CTNAG 6 cut(s) 41, 435, 588, 914, 1242, 1485
HpySE526I ACGT 2 cut(s) 802, 1157
Hsp92II CATG 6 cut(s) 271, 428, 468, 688, 758, 1035
KspAI GTTAAC 1 cut(s) 985
Kzo9I GATC 5 cut(s) 81, 421, 775, 910, 1164
LmnI GCTCC 4 cut(s) 575, 1252, 1478, 1486
LweI GCATC 5 cut(s) 13, 568, 678, 741, 1134
MaeI CTAG 5 cut(s) 234, 252, 635, 842, 962
MaeII ACGT 2 cut(s) 802, 1157
MalI GATC 5 cut(s) 83, 423, 777, 912, 1166
MboI GATC 5 cut(s) 81, 421, 775, 910, 1164
MboII GAAGA 6 cut(s) 25, 64, 386, 729, 1130, 1527
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 4 cut(s) 231, 580, 853, 1483
MluCI AATT 7 cut(s) 162, 295, 347, 477, 1198, 1519, 1547
MlyI GAGTC 2 cut(s) 8, 646
Mph1103I ATGCAT 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 1547
MseI TTAA 7 cut(s) 156, 165, 243, 984, 1085, 1502, 1558
MslI CAYNNNNRTG 2 cut(s) 759, 1464
MspCI CTTAAG 1 cut(s) 1501
MspI CCGG 1 cut(s) 1336
MspR9I CCNGG 2 cut(s) 86, 564
MvaI CCWGG 2 cut(s) 86, 564
MvnI CGCG 1 cut(s) 905
MwoI GCNNNNNNNGC 4 cut(s) 235, 389, 842, 1010
NdeI CATATG 1 cut(s) 1051
NdeII GATC 5 cut(s) 81, 421, 775, 910, 1164
NlaIII CATG 6 cut(s) 271, 428, 468, 688, 758, 1035
NlaIV GGNNCC 2 cut(s) 1248, 1431
NmeAIII GCCGAG 1 cut(s) 96
NruI TCGCGA 1 cut(s) 905
NsiI ATGCAT 1 cut(s) 756
NspI RCATGY 3 cut(s) 468, 688, 758
PaeI GCATGC 1 cut(s) 758
PaqCI CACCTGC 1 cut(s) 836
PciI ACATGT 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 1547
PfeI GAWTC 5 cut(s) 28, 145, 965, 1089, 1371
PflMI CCANNNNNTGG 1 cut(s) 1362
PfoI TCCNGGA 1 cut(s) 562
PleI GAGTC 2 cut(s) 8, 646
PpsI GAGTC 2 cut(s) 8, 646
Ppu21I YACGTR 1 cut(s) 803
PscI ACATGT 1 cut(s) 464
PsiI TTATAA 1 cut(s) 1154
Psp124BI GAGCTC 2 cut(s) 580, 1483
Psp1406I AACGTT 1 cut(s) 1157
Psp6I CCWGG 2 cut(s) 84, 562
PspGI CCWGG 2 cut(s) 84, 562
PspN4I GGNNCC 2 cut(s) 1248, 1431
PspPI GGNCC 2 cut(s) 338, 1430
PsrI GAACNNNNNNTAC 2 cut(s) 282, 314
PsuI RGATCY 1 cut(s) 81
RruI TCGCGA 1 cut(s) 905
RsaI GTAC 4 cut(s) 94, 370, 680, 782
RsaNI GTAC 4 cut(s) 93, 369, 679, 781
RseI CAYNNNNRTG 2 cut(s) 759, 1464
SacI GAGCTC 2 cut(s) 580, 1483
SaqAI TTAA 7 cut(s) 156, 165, 243, 984, 1085, 1502, 1558
Sau3AI GATC 5 cut(s) 81, 421, 775, 910, 1164
Sau96I GGNCC 2 cut(s) 338, 1430
SchI GAGTC 2 cut(s) 8, 646
ScrFI CCNGG 2 cut(s) 86, 564
SduI GDGCHC 4 cut(s) 231, 580, 853, 1483
SfaNI GCATC 5 cut(s) 13, 568, 678, 741, 1134
SinI GGWCC 1 cut(s) 1430
SmiMI CAYNNNNRTG 2 cut(s) 759, 1464
SmlI CTYRAG 3 cut(s) 224, 940, 1501
SmoI CTYRAG 3 cut(s) 224, 940, 1501
SphI GCATGC 1 cut(s) 758
Sse9I AATT 7 cut(s) 162, 295, 347, 477, 1198, 1519, 1547
SsiI CCGC 1 cut(s) 182
SspMI CTAG 5 cut(s) 234, 252, 635, 842, 962
SstI GAGCTC 2 cut(s) 580, 1483
StyD4I CCNGG 2 cut(s) 84, 562
TaaI ACNGT 1 cut(s) 785
TaiI ACGT 2 cut(s) 805, 1160
TaqI TCGA 3 cut(s) 977, 1179, 1551
TasI AATT 7 cut(s) 162, 295, 347, 477, 1198, 1519, 1547
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 5 cut(s) 28, 145, 965, 1089, 1371
Tru1I TTAA 7 cut(s) 156, 165, 243, 984, 1085, 1502, 1558
Tru9I TTAA 7 cut(s) 156, 165, 243, 984, 1085, 1502, 1558
TscAI CASTG 1 cut(s) 1535
TspDTI ATGAA 6 cut(s) 234, 470, 1010, 1020, 1165, 1485
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 1535
Van91I CCANNNNNTGG 1 cut(s) 1362
Vha464I CTTAAG 1 cut(s) 1501
VpaK11BI GGWCC 1 cut(s) 1430
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 5 cut(s) 347, 477, 1198, 1519, 1547
XbaI TCTAGA 1 cut(s) 634
XceI RCATGY 3 cut(s) 468, 688, 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 1388
XmiI GTMKAC 2 cut(s) 5, 1305
XmnI GAANNNNTTC 1 cut(s) 1547
XspI CTAG 5 cut(s) 234, 252, 635, 842, 962
Zsp2I ATGCAT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.