pycom02g05170

Glycosyl transferase family 21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014355
Physical Location & Seq
Reverse (-)
3417667 .. 3422258
4592 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g05170.8

Sequence Viewer

Length: 1566 bp
ATGGTAATAATGTCTGCATTGGATCCTCTCGATTCGATACTCTTCTCTCTCAGCAAAGCGTTCTGCAGCCCCCTAGGGGTCTTCGTTCAGATCCAGGGATGTCTAATCTGTTTGGTTCTTGCTTTCGGATGGGCTTGTGCGGCTTATGTCAGGAATAGGGAGATTAATCGGATGAAGGATAGTATGCAACGAGGCAATAGCTTTGCTTTCCTTTGCCATGATATCGCTGAACTTGAGCACTCAAATCAGCTCAAACTGCCCAGAGTAACAGTTGTTATGCCTTTGAAGGGATTTGGAGAACACAATTTACACAATTGGAGAAGTCAGGTCACTTCTCTCTACGGTGGTCCCTTAGAATTTATGTTTATCGTGGAAAGCAGAGAAGACCCTGCTTATCGTGCTGTATCTTTGCTGCTATCAGATCTTAAGGACGAGGTTGATGCTAAGATTGTTGTGGCTGGTCTTTCAACAACCTGTAGTCAGAAAATTCACAACCAATTGATTGGAGTGGAGAAAATGCACAAAGACAGCAAGTATGTATTATTTTTGGATGATGATGTTAGACTTCACCCTGGGTCGATTGGAGCCCTAACCTCCGAGATGGAGAAAAATCCTGATATATTTATCCAAACCGGATACCCCCTTGATTTGCCTTCGGGAAGCTTAGGGAGTTACTGCATTTATGAATATCATATGCCTTGCTCAATGGGCTTTGCTACTGGTGGAAGGACATTCTTTCTGTGGGGAGGATGCATGATGATGCATGCAGATGATTTTAGACTCGACCGCTATGGAGTGGTCACAGGACTTAAAAATGGCGGTTACTCTGATGATATGACTCTTGCAGCTATAGCCGGTGCTCATAAAAGGCTCATCACATCACCTCCAGTTGCCGTTTTCCCCCATCCGCTTGCAAGTGATCTTAGTTTTCCAAGGTATTGGAACTACTTGAGGAAGCAGACATTTGTGTTGGAATCATATACAACAACAGTTAACTGGATTATGAACCGTGCATTGTTTACCGTCCACTGCTATCTCTCATGGGGGTTTGTAACACCATTCTTAATGGCCATTATTCATATCACCGCAGCCCTACGAATGCATATTACAGGGTATTCAATCGAGGAAACAACCTTCACTTTTGGTGGATTGAAACTGGTAGGCTGCCTAGCGACATGCACAATTATCGAACTTCTTTCAATGTGGAACTTGACCAGGATAGAAGTTCATTTATGCAACTTGTTATCGCCAGAGACTCCTAAACTCTCACTTGCTACTTACAACTGGAGCCTTGTTTTTATCGCACTTATAGTGGATAATTTTTTGTACCCCATCTCTGCCTTCCGTTCTCATTTCTCTCAGTCGATAAATTGGTCTGGTATTCGATATCACTTAAAGGATGGGAAGATATTCAAGATTGAACGAAGCAAGGATATGGGTCCGATATATACGGACTTGGGAGGAAAGCATTTAGGGAAGAAAGGAGCTCCTCCGAAACTGCCATTCCTCAGCTCTTTGGCCAGAAGTTTGGCACAATGGCGTCAGCCGAAGAAATACGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_21

Protein Analysis

522

Amino Acids

58.6

Weight (kDa)

8.45

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19880 AT2G19880
fragaria_vesca FvH4_1g06110
malus_domestica MD02G1065600.v1.1 MD15G1196500.v1.1
prunus_persica Prupe.7G219900_v2.0.a1 Prupe.7G219900_v2.0.a1
pyrus_communis pycom02g05170 pycom15g17560
rosa_chinensis RchiOBHm_Chr2g0091861
rosa_laevigata RLG00000016258
rosa_multiflora Rmu_sc0010910.1_g000001
rosa_roxburghii Rroxscaffold_2G00149660
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066600 Rh2DG065600
rosa_wichuraiana Rw2G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 140, 787, 819, 908, 1086
AclWI GGATC 3 cut(s) 17, 30, 85
AcoI YGGCCR 2 cut(s) 1068, 1518
AcsI RAATTY 2 cut(s) 356, 486
AcyI GRCGYC 1 cut(s) 1540
AfaI GTAC 1 cut(s) 1328
AfiI CCNNNNNNNGG 2 cut(s) 76, 287
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 7 cut(s) 286, 468, 1119, 1153, 1200, 1414, 1421
AjnI CCWGG 3 cut(s) 93, 571, 1214
AluBI AGCT 6 cut(s) 201, 250, 663, 848, 1487, 1512
AluI AGCT 6 cut(s) 201, 250, 663, 848, 1487, 1512
Alw21I GWGCWC 3 cut(s) 240, 862, 1489
Alw26I GTCTC 1 cut(s) 1247
AlwI GGATC 3 cut(s) 17, 30, 85
AoxI GGCC 2 cut(s) 1068, 1518
ApeKI GCWGC 5 cut(s) 66, 412, 845, 1088, 1164
ApoI RAATTY 2 cut(s) 356, 486
AseI ATTAAT 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 1409
AspA2I CCTAGG 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 347, 1439
AsuHPI GGTGA 3 cut(s) 560, 873, 1075
AvaII GGWCC 2 cut(s) 347, 1439
AvrII CCTAGG 1 cut(s) 73
BalI TGGCCA 2 cut(s) 1070, 1520
BamHI GGATCC 1 cut(s) 22
BanII GRGCYC 2 cut(s) 589, 1489
BbsI GAAGAC 2 cut(s) 73, 390
Bbv12I GWGCWC 3 cut(s) 240, 862, 1489
BbvCI CCTCAGC 1 cut(s) 1508
BbvI GCAGC 5 cut(s) 78, 399, 857, 1100, 1151
BccI CCATC 5 cut(s) 123, 595, 912, 1340, 1394
BceAI ACGGC 1 cut(s) 878
BcgI CGANNNNNNTGC 4 cut(s) 422, 456, 1168, 1202
BciT130I CCWGG 3 cut(s) 95, 573, 1216
BciVI GTATCC 1 cut(s) 629
BcoDI GTCTC 1 cut(s) 1247
BfaI CTAG 3 cut(s) 74, 1169, 1564
BfmI CTRYAG 3 cut(s) 64, 475, 849
BfrI CTTAAG 1 cut(s) 425
BfuI GTATCC 1 cut(s) 629
BglII AGATCT 1 cut(s) 421
BisI GCNGC 6 cut(s) 67, 141, 413, 846, 1089, 1165
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 6 cut(s) 68, 142, 414, 847, 1090, 1166
Bme1390I CCNGG 3 cut(s) 95, 573, 1216
Bme18I GGWCC 2 cut(s) 347, 1439
BmgT120I GGNCC 2 cut(s) 347, 1439
BmiI GGNNCC 5 cut(s) 24, 349, 586, 1289, 1440
BmrFI CCNGG 3 cut(s) 95, 573, 1216
BmsI GCATC 3 cut(s) 430, 740, 750
BpiI GAAGAC 2 cut(s) 73, 390
BpmI CTGGAG 2 cut(s) 870, 1306
Bpu10I CCTNAGC 2 cut(s) 664, 1508
BpuEI CTTGAG 2 cut(s) 254, 970
BsaHI GRCGYC 1 cut(s) 1540
BsaJI CCNNGG 5 cut(s) 73, 94, 571, 572, 932
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 287
Bse118I RCCGGY 1 cut(s) 854
Bse1I ACTGG 5 cut(s) 724, 887, 1001, 1161, 1289
BseBI CCWGG 3 cut(s) 95, 573, 1216
BseDI CCNNGG 5 cut(s) 73, 94, 571, 572, 932
BseGI GGATG 7 cut(s) 104, 134, 177, 556, 755, 904, 1405
BseLI CCNNNNNNNGG 2 cut(s) 76, 287
BseMII CTCAG 3 cut(s) 64, 1373, 1522
BseNI ACTGG 5 cut(s) 724, 887, 1001, 1161, 1289
BseRI GAGGAG 1 cut(s) 1479
BseXI GCAGC 5 cut(s) 78, 399, 857, 1100, 1151
Bsh1285I CGRYCG 1 cut(s) 787
BshFI GGCC 2 cut(s) 1070, 1520
BsiEI CGRYCG 1 cut(s) 787
BsiHKAI GWGCWC 3 cut(s) 240, 862, 1489
BsiSI CCGG 2 cut(s) 633, 855
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 2 cut(s) 76, 287
BsmAI GTCTC 1 cut(s) 1247
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 1104
BsnI GGCC 2 cut(s) 1070, 1520
Bsp1286I GDGCHC 4 cut(s) 240, 589, 862, 1489
Bsp143I GATC 4 cut(s) 22, 90, 421, 919
BspACI CCGC 5 cut(s) 140, 787, 819, 908, 1086
BspANI GGCC 2 cut(s) 1070, 1520
BspCNI CTCAG 3 cut(s) 63, 1372, 1521
BspLI GGNNCC 5 cut(s) 24, 349, 586, 1289, 1440
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 3 cut(s) 17, 30, 85
BspTI CTTAAG 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 854
BsrI ACTGG 5 cut(s) 724, 887, 1001, 1161, 1289
BssAI RCCGGY 1 cut(s) 854
BssECI CCNNGG 5 cut(s) 73, 94, 571, 572, 932
BssMI GATC 4 cut(s) 22, 90, 421, 919
BssNI GRCGYC 1 cut(s) 1540
BssT1I CCWWGG 2 cut(s) 73, 932
Bst2UI CCWGG 3 cut(s) 95, 573, 1216
Bst4CI ACNGT 5 cut(s) 271, 344, 991, 1010, 1024
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 1540
BstAFI CTTAAG 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 765, 912
BstDEI CTNAG 7 cut(s) 50, 352, 444, 664, 923, 1359, 1508
BstF5I GGATG 7 cut(s) 104, 134, 177, 556, 755, 904, 1405
BstKTI GATC 4 cut(s) 25, 93, 424, 922
BstMAI GTCTC 1 cut(s) 1247
BstMBI GATC 4 cut(s) 22, 90, 421, 919
BstMCI CGRYCG 1 cut(s) 787
BstMWI GCNNNNNNNGC 5 cut(s) 140, 256, 398, 708, 851
BstNI CCWGG 3 cut(s) 95, 573, 1216
BstNSI RCATGY 2 cut(s) 767, 1179
BstSCI CCNGG 3 cut(s) 93, 571, 1214
BstSFI CTRYAG 3 cut(s) 64, 475, 849
BstV1I GCAGC 5 cut(s) 78, 399, 857, 1100, 1151
BstV2I GAAGAC 2 cut(s) 73, 390
BstX2I RGATCY 3 cut(s) 22, 90, 421
BstXI CCANNNNNNTGG 3 cut(s) 503, 939, 1528
BstYI RGATCY 3 cut(s) 22, 90, 421
BsuI GTATCC 1 cut(s) 629
BsuRI GGCC 2 cut(s) 1070, 1520
BtsCI GGATG 7 cut(s) 104, 134, 177, 556, 755, 904, 1405
BtsI GCAGTG 1 cut(s) 1027
BtsIMutI CAGTG 1 cut(s) 1027
Cac8I GCNNGC 2 cut(s) 765, 912
Cfr10I RCCGGY 1 cut(s) 854
Cfr13I GGNCC 2 cut(s) 347, 1439
CseI GACGC 1 cut(s) 1529
Csp6I GTAC 1 cut(s) 1327
CviAII CATG 5 cut(s) 218, 754, 764, 1041, 1176
CviQI GTAC 1 cut(s) 1327
DdeI CTNAG 7 cut(s) 50, 352, 444, 664, 923, 1359, 1508
DpnI GATC 4 cut(s) 24, 92, 423, 921
DpnII GATC 4 cut(s) 22, 90, 421, 919
EaeI YGGCCR 2 cut(s) 1068, 1518
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 1487
Eco130I CCWWGG 2 cut(s) 73, 932
Eco24I GRGCYC 2 cut(s) 589, 1489
Eco32I GATATC 3 cut(s) 223, 1388, 1561
Eco47I GGWCC 2 cut(s) 347, 1439
Eco53kI GAGCTC 1 cut(s) 1487
EcoICRI GAGCTC 1 cut(s) 1487
EcoRII CCWGG 3 cut(s) 93, 571, 1214
EcoRV GATATC 3 cut(s) 223, 1388, 1561
EcoT14I CCWWGG 2 cut(s) 73, 932
EcoT22I ATGCAT 3 cut(s) 755, 765, 1104
EcoT38I GRGCYC 2 cut(s) 589, 1489
ErhI CCWWGG 2 cut(s) 73, 932
FaeI CATG 5 cut(s) 221, 757, 767, 1044, 1179
FaqI GGGAC 1 cut(s) 333
FatI CATG 5 cut(s) 217, 753, 763, 1040, 1175
FauNDI CATATG 1 cut(s) 693
Fnu4HI GCNGC 6 cut(s) 67, 141, 413, 846, 1089, 1165
FokI GGATG 7 cut(s) 111, 141, 184, 563, 762, 891, 1412
FriOI GRGCYC 2 cut(s) 589, 1489
Fsp4HI GCNGC 6 cut(s) 67, 141, 413, 846, 1089, 1165
FspBI CTAG 3 cut(s) 74, 1169, 1564
GluI GCNGC 6 cut(s) 67, 141, 413, 846, 1089, 1165
GsuI CTGGAG 2 cut(s) 870, 1306
HaeIII GGCC 2 cut(s) 1070, 1520
HapII CCGG 2 cut(s) 633, 855
HgaI GACGC 1 cut(s) 1529
Hin1I GRCGYC 1 cut(s) 1540
Hin1II CATG 5 cut(s) 221, 757, 767, 1044, 1179
HincII GTYRAC 1 cut(s) 994
HindII GTYRAC 1 cut(s) 994
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 5 cut(s) 32, 780, 838, 974, 1255
HpaI GTTAAC 1 cut(s) 994
HpaII CCGG 2 cut(s) 633, 855
HphI GGTGA 3 cut(s) 560, 873, 1075
Hpy166II GTNNAC 3 cut(s) 994, 1020, 1027
Hpy188I TCNGA 9 cut(s) 90, 128, 171, 421, 483, 598, 829, 1443, 1494
Hpy188III TCNNGA 5 cut(s) 29, 151, 614, 657, 1414
Hpy8I GTNNAC 3 cut(s) 994, 1020, 1027
HpyAV CCTTC 6 cut(s) 169, 280, 663, 720, 1144, 1351
HpyCH4III ACNGT 5 cut(s) 271, 344, 991, 1010, 1024
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 256, 398, 708, 851
HpyF3I CTNAG 7 cut(s) 50, 352, 444, 664, 923, 1359, 1508
Hsp92I GRCGYC 1 cut(s) 1540
Hsp92II CATG 5 cut(s) 221, 757, 767, 1044, 1179
KspAI GTTAAC 1 cut(s) 994
Kzo9I GATC 4 cut(s) 22, 90, 421, 919
LmnI GCTCC 4 cut(s) 584, 1287, 1484, 1492
Lsp1109I GCAGC 5 cut(s) 78, 399, 857, 1100, 1151
LweI GCATC 3 cut(s) 430, 740, 750
MaeI CTAG 3 cut(s) 74, 1169, 1564
MaeIII GTNAC 6 cut(s) 265, 328, 671, 799, 821, 1051
MalI GATC 4 cut(s) 24, 92, 423, 921
MboI GATC 4 cut(s) 22, 90, 421, 919
MboII GAAGA 6 cut(s) 34, 73, 395, 1417, 1489, 1561
MfeI CAATTG 2 cut(s) 313, 497
MflI RGATCY 3 cut(s) 22, 90, 421
MhlI GDGCHC 4 cut(s) 240, 589, 862, 1489
MlsI TGGCCA 2 cut(s) 1070, 1520
MluCI AATT 8 cut(s) 304, 313, 356, 486, 497, 1182, 1318, 1369
MluNI TGGCCA 2 cut(s) 1070, 1520
MlyI GAGTC 3 cut(s) 774, 832, 1249
MmeI TCCRAC 1 cut(s) 951
Mox20I TGGCCA 2 cut(s) 1070, 1520
Mph1103I ATGCAT 3 cut(s) 755, 765, 1104
MroXI GAANNNNTTC 1 cut(s) 1409
MscI TGGCCA 2 cut(s) 1070, 1520
MseI TTAA 6 cut(s) 165, 426, 810, 993, 1064, 1394
MslI CAYNNNNRTG 2 cut(s) 758, 768
Msp20I TGGCCA 2 cut(s) 1070, 1520
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 2 cut(s) 633, 855
MspR9I CCNGG 3 cut(s) 95, 573, 1216
MunI CAATTG 2 cut(s) 313, 497
Mva1269I GAATGC 1 cut(s) 1104
MvaI CCWGG 3 cut(s) 95, 573, 1216
MwoI GCNNNNNNNGC 5 cut(s) 140, 256, 398, 708, 851
NdeI CATATG 1 cut(s) 693
NdeII GATC 4 cut(s) 22, 90, 421, 919
NlaIII CATG 5 cut(s) 221, 757, 767, 1044, 1179
NlaIV GGNNCC 5 cut(s) 24, 349, 586, 1289, 1440
NmuCI GTSAC 2 cut(s) 328, 799
NsiI ATGCAT 3 cut(s) 755, 765, 1104
NspI RCATGY 2 cut(s) 767, 1179
PaeI GCATGC 1 cut(s) 767
PasI CCCWGGG 1 cut(s) 572
PctI GAATGC 1 cut(s) 1104
PdmI GAANNNNTTC 1 cut(s) 1409
PfeI GAWTC 2 cut(s) 32, 974
PkrI GCNGC 6 cut(s) 68, 142, 414, 847, 1090, 1166
PleI GAGTC 3 cut(s) 774, 832, 1249
PpsI GAGTC 3 cut(s) 774, 832, 1249
PshBI ATTAAT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 1489
Psp6I CCWGG 3 cut(s) 93, 571, 1214
PspGI CCWGG 3 cut(s) 93, 571, 1214
PspN4I GGNNCC 5 cut(s) 24, 349, 586, 1289, 1440
PspPI GGNCC 2 cut(s) 347, 1439
PsrI GAACNNNNNNTAC 2 cut(s) 291, 323
PstI CTGCAG 1 cut(s) 68
PsuI RGATCY 3 cut(s) 22, 90, 421
RsaI GTAC 1 cut(s) 1328
RsaNI GTAC 1 cut(s) 1327
RseI CAYNNNNRTG 2 cut(s) 758, 768
SacI GAGCTC 1 cut(s) 1489
SaqAI TTAA 6 cut(s) 165, 426, 810, 993, 1064, 1394
SatI GCNGC 6 cut(s) 67, 141, 413, 846, 1089, 1165
Sau3AI GATC 4 cut(s) 22, 90, 421, 919
Sau96I GGNCC 2 cut(s) 347, 1439
SchI GAGTC 3 cut(s) 774, 832, 1249
ScrFI CCNGG 3 cut(s) 95, 573, 1216
SduI GDGCHC 4 cut(s) 240, 589, 862, 1489
SfaNI GCATC 3 cut(s) 430, 740, 750
SfcI CTRYAG 3 cut(s) 64, 475, 849
SinI GGWCC 2 cut(s) 347, 1439
SmiMI CAYNNNNRTG 2 cut(s) 758, 768
SmlI CTYRAG 3 cut(s) 233, 425, 949
SmoI CTYRAG 3 cut(s) 233, 425, 949
SphI GCATGC 1 cut(s) 767
Sse9I AATT 8 cut(s) 304, 313, 356, 486, 497, 1182, 1318, 1369
SsiI CCGC 5 cut(s) 140, 787, 819, 908, 1086
SspMI CTAG 3 cut(s) 74, 1169, 1564
SstI GAGCTC 1 cut(s) 1489
StyD4I CCNGG 3 cut(s) 93, 571, 1214
StyI CCWWGG 2 cut(s) 73, 932
TaaI ACNGT 5 cut(s) 271, 344, 991, 1010, 1024
TaqI TCGA 8 cut(s) 30, 35, 578, 783, 1122, 1188, 1364, 1384
TasI AATT 8 cut(s) 304, 313, 356, 486, 497, 1182, 1318, 1369
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 2 cut(s) 32, 974
Tru1I TTAA 6 cut(s) 165, 426, 810, 993, 1064, 1394
Tru9I TTAA 6 cut(s) 165, 426, 810, 993, 1064, 1394
TscAI CASTG 1 cut(s) 1034
TseFI GTSAC 2 cut(s) 328, 799
TseI GCWGC 5 cut(s) 66, 412, 845, 1088, 1164
Tsp45I GTSAC 2 cut(s) 328, 799
TspDTI ATGAA 5 cut(s) 188, 699, 1019, 1067, 1217
TspGWI ACGGA 2 cut(s) 1334, 1466
TspRI CASTG 1 cut(s) 1034
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 2 cut(s) 347, 1439
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 2 cut(s) 356, 486
XceI RCATGY 2 cut(s) 767, 1179
XmaJI CCTAGG 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 1409
XspI CTAG 3 cut(s) 74, 1169, 1564
Zsp2I ATGCAT 3 cut(s) 755, 765, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.