Prupe.7G219900_v2.0.a1

Glycosyl transferase family 21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014355
Physical Location & Seq
Forward (+)
19724908 .. 19731300
6393 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G219900.1

Sequence Viewer

Length: 1557 bp
ATGTCTGCATTGGATCCTGTCGATTCGTTCCTCTTCTCTCTCAGCAGAGCCTTTTGCAGTCCGCTAGCAGTTTTTGTCCAGATCCAGGGATGTCTAATCTGTTTGATACTTGCTTTCGGATGGGTTTGTGCAGCTTATGTCAGGAATAGAGAGATTAAAAGGATGAAAGATAGCATGCAACGTGGAAATAGCTTTGCTTTCCTTTGCCATGATATCACTGAACTTGAGCACTCAAATCAGCTCAAACGGCCAAGCGTATCAGTTGTTATGCCTTTAAAGGGATTTGGAGAACACAATTTACACAATTGGAGAAGCCAGATCACTTCTCTCTATGGTGGTCCCTTAGAATTTCTCTTTATCGTGGAAAGTACAGACGACCCTGCTTACCGTGCAGTATCTATGTTACTATCTGAGCTTAAGGATGAGGTTGATGCTAAGGTTGTTGTAGCTGGCCTTTCAACAACCTGTAGTCAGAAAATTCACAACCAATTGGTTGGAGTGGAGAAAATGCACAAAGACAGCAAGTATGTATTATTTTTGGATGATGATGTCAGGCTTCACCCTGGGTCAATTGGAGCCCTAACAGCTGAGATGGAGAAAAATCCTGACATATTTATCCAAACTGGATACCCTCTTGATTTGCCATCGGGAAGCTTAGGGAGTTACTGCATTTATGAATATCATATGCCTTGCTCAATGGGCTTTGCTACTGGTGGAAGGACATTCTTTCTGTGGGGAGGGTGCATGATGATGCATGCAAATGATTTTAGACTTGATCGCTATGGCGTGGTCACAGGACTTAAAAATGGTGGTTACTCGGATGATATGACTCTTGCAGCTATAGCCGGAGCTCATAAGAGGCTGATCACGTCACCCCCAGTCGCCGTGTTTCCTCATCCACTTGCAAGTGATCTTAGTTTTTCGAGGTATTGGAATTACTTGAGGAAGCAGACATTTGTATTGGAATCATATACAACCAAAGTTAACTGGATAATGAACCGTGCATTGTTTACCACCCACTGCTATCTCTCATGGGGATTGGTAACACCATACTTAATGGCCATTGTTCATATCACCGCAGCCCTGAGAATGTATATTAAGGGGTATTCAATCGAGGAAACAACCTTCACTTTTGGTGGATTGAAACTGGTAAGCTGCCTGGCTGCATGCACATTGATCGAACTTCTTTCAATGTGGAACTTGACCAGGATAGAAGTTCATCTATGCAACATGTTATCACCAGAGGCACCTAAACTCTCACTTGCTTCTTACAACTGGGGACTTGTATTTATTGCAATTCTAGTAGATAATTTTTTATACCCCATCTCTGCCTTCCGTTCACATTTCACCCAGTCAATAAATTGGTCTGGCATTCGATACCACTTAAAGGATGGGAAGATATTCAAGATTGAACGAAGCAAGGATATGGGTCCAGTATATACTGATTTGGGAGGAAAGCATTTAGGAAAGAAAGGAGCTCCTCCAAAATTGTCATTCCTCAGCTCTTTGGCCAGAAGTTTGGCACAATGGCGTCAGCCCAAGAAATATGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_21

Protein Analysis

519

Amino Acids

58.23

Weight (kDa)

8.73

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19880 AT2G19880
fragaria_vesca FvH4_1g06110
malus_domestica MD02G1065600.v1.1 MD15G1196500.v1.1
prunus_persica Prupe.7G219900_v2.0.a1 Prupe.7G219900_v2.0.a1
pyrus_communis pycom02g05170 pycom15g17560
rosa_chinensis RchiOBHm_Chr2g0091861
rosa_laevigata RLG00000016258
rosa_multiflora Rmu_sc0010910.1_g000001
rosa_roxburghii Rroxscaffold_2G00149660
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066600 Rh2DG065600
rosa_wichuraiana Rw2G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1246
AciI CCGC 2 cut(s) 62, 1077
AclWI GGATC 3 cut(s) 8, 21, 76
AcoI YGGCCR 3 cut(s) 248, 1059, 1509
AcsI RAATTY 2 cut(s) 347, 477
AcyI GRCGYC 1 cut(s) 1531
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 3 cut(s) 85, 278, 1387
AflII CTTAAG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 1230
AgsI TTSAA 6 cut(s) 459, 1110, 1144, 1191, 1405, 1412
AjiI CACGTC 1 cut(s) 870
AjnI CCWGG 4 cut(s) 84, 562, 1158, 1205
Alw21I GWGCWC 3 cut(s) 231, 853, 1480
AlwI GGATC 3 cut(s) 8, 21, 76
AoxI GGCC 4 cut(s) 248, 451, 1059, 1509
ApeKI GCWGC 5 cut(s) 131, 836, 1079, 1155, 1163
ApoI RAATTY 2 cut(s) 347, 477
Asp700I GAANNNNTTC 1 cut(s) 1400
AspS9I GGNCC 2 cut(s) 338, 1430
AsuHPI GGTGA 5 cut(s) 551, 864, 1066, 1230, 1339
AsuNHI GCTAGC 1 cut(s) 64
AvaII GGWCC 2 cut(s) 338, 1430
BalI TGGCCA 2 cut(s) 1061, 1511
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 1246
BanII GRGCYC 3 cut(s) 580, 853, 1480
Bbv12I GWGCWC 3 cut(s) 231, 853, 1480
BbvCI CCTCAGC 1 cut(s) 1499
BbvI GCAGC 5 cut(s) 143, 848, 1091, 1142, 1150
BccI CCATC 5 cut(s) 114, 586, 652, 1331, 1385
BceAI ACGGC 2 cut(s) 263, 869
BcgI CGANNNNNNTGC 2 cut(s) 1159, 1193
BciT130I CCWGG 4 cut(s) 86, 564, 1160, 1207
BciVI GTATCC 1 cut(s) 620
BclI TGATCA 1 cut(s) 864
BfaI CTAG 3 cut(s) 65, 1301, 1555
BfmI CTRYAG 2 cut(s) 466, 840
BfrI CTTAAG 1 cut(s) 416
BfuI GTATCC 1 cut(s) 620
BisI GCNGC 5 cut(s) 132, 837, 1080, 1156, 1164
BlsI GCNGC 5 cut(s) 133, 838, 1081, 1157, 1165
Bme1390I CCNGG 4 cut(s) 86, 564, 1160, 1207
Bme18I GGWCC 2 cut(s) 338, 1430
BmgBI CACGTC 1 cut(s) 870
BmgT120I GGNCC 2 cut(s) 338, 1430
BmiI GGNNCC 5 cut(s) 15, 340, 577, 1248, 1431
BmrFI CCNGG 4 cut(s) 86, 564, 1160, 1207
BmrI ACTGGG 3 cut(s) 872, 1285, 1345
BmsI GCATC 2 cut(s) 421, 741
BmtI GCTAGC 1 cut(s) 68
BmuI ACTGGG 3 cut(s) 872, 1285, 1345
Bpu10I CCTNAGC 3 cut(s) 435, 655, 1499
BpuEI CTTGAG 2 cut(s) 245, 961
BsaHI GRCGYC 1 cut(s) 1531
BsaJI CCNNGG 3 cut(s) 85, 562, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 278, 1387
Bse1I ACTGG 8 cut(s) 628, 715, 878, 992, 1152, 1280, 1351, 1433
BseBI CCWGG 4 cut(s) 86, 564, 1160, 1207
BseDI CCNNGG 3 cut(s) 85, 562, 563
BseGI GGATG 8 cut(s) 95, 125, 168, 427, 547, 826, 895, 1396
BseLI CCNNNNNNNGG 3 cut(s) 85, 278, 1387
BseMII CTCAG 5 cut(s) 55, 402, 579, 1076, 1513
BseNI ACTGG 8 cut(s) 628, 715, 878, 992, 1152, 1280, 1351, 1433
BseRI GAGGAG 1 cut(s) 1470
BseXI GCAGC 5 cut(s) 143, 848, 1091, 1142, 1150
BsgI GTGCAG 2 cut(s) 150, 411
BshFI GGCC 4 cut(s) 250, 453, 1061, 1511
BshNI GGYRCC 1 cut(s) 1246
BsiHKAI GWGCWC 3 cut(s) 231, 853, 1480
BsiSI CCGG 1 cut(s) 846
BslFI GGGAC 2 cut(s) 324, 1293
BslI CCNNNNNNNGG 3 cut(s) 85, 278, 1387
BsmFI GGGAC 2 cut(s) 324, 1293
BsmI GAATGC 1 cut(s) 1371
BsnI GGCC 4 cut(s) 250, 453, 1061, 1511
Bsp1286I GDGCHC 4 cut(s) 231, 580, 853, 1480
Bsp143I GATC 7 cut(s) 13, 81, 318, 775, 864, 910, 1176
BspACI CCGC 2 cut(s) 62, 1077
BspANI GGCC 4 cut(s) 250, 453, 1061, 1511
BspCNI CTCAG 5 cut(s) 54, 403, 580, 1077, 1512
BspLI GGNNCC 5 cut(s) 15, 340, 577, 1248, 1431
BspOI GCTAGC 1 cut(s) 68
BspPI GGATC 3 cut(s) 8, 21, 76
BspT107I GGYRCC 1 cut(s) 1246
BspTI CTTAAG 1 cut(s) 416
BsrI ACTGG 8 cut(s) 628, 715, 878, 992, 1152, 1280, 1351, 1433
BssECI CCNNGG 3 cut(s) 85, 562, 563
BssMI GATC 7 cut(s) 13, 81, 318, 775, 864, 910, 1176
BssNI GRCGYC 1 cut(s) 1531
Bst2UI CCWGG 4 cut(s) 86, 564, 1160, 1207
Bst4CI ACNGT 2 cut(s) 389, 1001
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 1531
BstAFI CTTAAG 1 cut(s) 416
BstC8I GCNNGC 5 cut(s) 66, 176, 451, 756, 1168
BstDEI CTNAG 9 cut(s) 41, 343, 411, 435, 588, 655, 914, 1085, 1499
BstF5I GGATG 8 cut(s) 95, 125, 168, 427, 547, 826, 895, 1396
BstKTI GATC 7 cut(s) 16, 84, 321, 778, 867, 913, 1179
BstMBI GATC 7 cut(s) 13, 81, 318, 775, 864, 910, 1176
BstMWI GCNNNNNNNGC 5 cut(s) 247, 389, 584, 699, 842
BstNI CCWGG 4 cut(s) 86, 564, 1160, 1207
BstNSI RCATGY 4 cut(s) 178, 758, 1170, 1234
BstSCI CCNGG 4 cut(s) 84, 562, 1158, 1205
BstSFI CTRYAG 2 cut(s) 466, 840
BstV1I GCAGC 5 cut(s) 143, 848, 1091, 1142, 1150
BstX2I RGATCY 2 cut(s) 13, 81
BstXI CCANNNNNNTGG 2 cut(s) 494, 1519
BstYI RGATCY 2 cut(s) 13, 81
BsuI GTATCC 1 cut(s) 620
BsuRI GGCC 4 cut(s) 250, 453, 1061, 1511
BtrI CACGTC 1 cut(s) 870
BtsCI GGATG 8 cut(s) 95, 125, 168, 427, 547, 826, 895, 1396
BtsI GCAGTG 1 cut(s) 1018
BtsIMutI CAGTG 2 cut(s) 216, 1018
Cac8I GCNNGC 5 cut(s) 66, 176, 451, 756, 1168
Cfr13I GGNCC 2 cut(s) 338, 1430
CseI GACGC 1 cut(s) 1520
Csp6I GTAC 1 cut(s) 369
CviAII CATG 7 cut(s) 175, 209, 745, 755, 1032, 1167, 1231
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 9 cut(s) 41, 343, 411, 435, 588, 655, 914, 1085, 1499
DpnI GATC 7 cut(s) 15, 83, 320, 777, 866, 912, 1178
DpnII GATC 7 cut(s) 13, 81, 318, 775, 864, 910, 1176
DraI TTTAAA 1 cut(s) 276
EaeI YGGCCR 3 cut(s) 248, 1059, 1509
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Ecl136II GAGCTC 2 cut(s) 851, 1478
Eco24I GRGCYC 3 cut(s) 580, 853, 1480
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 338, 1430
Eco53kI GAGCTC 2 cut(s) 851, 1478
EcoICRI GAGCTC 2 cut(s) 851, 1478
EcoRII CCWGG 4 cut(s) 84, 562, 1158, 1205
EcoRV GATATC 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 756
EcoT38I GRGCYC 3 cut(s) 580, 853, 1480
FaeI CATG 7 cut(s) 178, 212, 748, 758, 1035, 1170, 1234
FaqI GGGAC 2 cut(s) 324, 1293
FatI CATG 7 cut(s) 174, 208, 744, 754, 1031, 1166, 1230
FauNDI CATATG 1 cut(s) 684
FbaI TGATCA 1 cut(s) 864
Fnu4HI GCNGC 5 cut(s) 132, 837, 1080, 1156, 1164
FokI GGATG 8 cut(s) 102, 132, 175, 434, 554, 833, 882, 1403
FriOI GRGCYC 3 cut(s) 580, 853, 1480
Fsp4HI GCNGC 5 cut(s) 132, 837, 1080, 1156, 1164
FspBI CTAG 3 cut(s) 65, 1301, 1555
GluI GCNGC 5 cut(s) 132, 837, 1080, 1156, 1164
HaeIII GGCC 4 cut(s) 250, 453, 1061, 1511
HapII CCGG 1 cut(s) 846
HgaI GACGC 1 cut(s) 1520
Hin1I GRCGYC 1 cut(s) 1531
Hin1II CATG 7 cut(s) 178, 212, 748, 758, 1035, 1170, 1234
HincII GTYRAC 1 cut(s) 985
HindII GTYRAC 1 cut(s) 985
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 3 cut(s) 23, 829, 965
HpaI GTTAAC 1 cut(s) 985
HpaII CCGG 1 cut(s) 846
HphI GGTGA 5 cut(s) 551, 864, 1066, 1230, 1339
Hpy166II GTNNAC 3 cut(s) 985, 1011, 1340
Hpy188I TCNGA 4 cut(s) 119, 412, 474, 820
Hpy188III TCNNGA 6 cut(s) 79, 142, 605, 635, 648, 1405
Hpy8I GTNNAC 3 cut(s) 985, 1011, 1340
HpyAV CCTTC 3 cut(s) 711, 1135, 1342
HpyCH4III ACNGT 2 cut(s) 389, 1001
HpyCH4IV ACGT 2 cut(s) 181, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 247, 389, 584, 699, 842
HpyF3I CTNAG 9 cut(s) 41, 343, 411, 435, 588, 655, 914, 1085, 1499
HpySE526I ACGT 2 cut(s) 181, 869
Hsp92I GRCGYC 1 cut(s) 1531
Hsp92II CATG 7 cut(s) 178, 212, 748, 758, 1035, 1170, 1234
Ksp22I TGATCA 1 cut(s) 864
KspAI GTTAAC 1 cut(s) 985
Kzo9I GATC 7 cut(s) 13, 81, 318, 775, 864, 910, 1176
LmnI GCTCC 4 cut(s) 575, 848, 1475, 1483
Lsp1109I GCAGC 5 cut(s) 143, 848, 1091, 1142, 1150
LweI GCATC 2 cut(s) 421, 741
MaeI CTAG 3 cut(s) 65, 1301, 1555
MaeII ACGT 2 cut(s) 181, 869
MaeIII GTNAC 6 cut(s) 402, 662, 790, 812, 870, 1042
MalI GATC 7 cut(s) 15, 83, 320, 777, 866, 912, 1178
MboI GATC 7 cut(s) 13, 81, 318, 775, 864, 910, 1176
MboII GAAGA 2 cut(s) 25, 1408
MfeI CAATTG 3 cut(s) 304, 488, 570
MflI RGATCY 2 cut(s) 13, 81
MhlI GDGCHC 4 cut(s) 231, 580, 853, 1480
MlsI TGGCCA 2 cut(s) 1061, 1511
MluNI TGGCCA 2 cut(s) 1061, 1511
MlyI GAGTC 1 cut(s) 823
MmeI TCCRAC 1 cut(s) 475
Mox20I TGGCCA 2 cut(s) 1061, 1511
Mph1103I ATGCAT 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 1400
MscI TGGCCA 2 cut(s) 1061, 1511
MseI TTAA 8 cut(s) 156, 275, 417, 801, 984, 1055, 1098, 1385
MslI CAYNNNNRTG 2 cut(s) 749, 759
Msp20I TGGCCA 2 cut(s) 1061, 1511
MspA1I CMGCKG 1 cut(s) 587
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 1 cut(s) 846
MspR9I CCNGG 4 cut(s) 86, 564, 1160, 1207
MunI CAATTG 3 cut(s) 304, 488, 570
Mva1269I GAATGC 1 cut(s) 1371
MvaI CCWGG 4 cut(s) 86, 564, 1160, 1207
MwoI GCNNNNNNNGC 5 cut(s) 247, 389, 584, 699, 842
NdeI CATATG 1 cut(s) 684
NdeII GATC 7 cut(s) 13, 81, 318, 775, 864, 910, 1176
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 7 cut(s) 178, 212, 748, 758, 1035, 1170, 1234
NlaIV GGNNCC 5 cut(s) 15, 340, 577, 1248, 1431
NmuCI GTSAC 2 cut(s) 790, 870
NsiI ATGCAT 1 cut(s) 756
NspI RCATGY 4 cut(s) 178, 758, 1170, 1234
PaeI GCATGC 3 cut(s) 178, 758, 1170
PasI CCCWGGG 1 cut(s) 563
PciI ACATGT 1 cut(s) 1230
PctI GAATGC 1 cut(s) 1371
PdmI GAANNNNTTC 1 cut(s) 1400
PfeI GAWTC 2 cut(s) 23, 965
PkrI GCNGC 5 cut(s) 133, 838, 1081, 1157, 1165
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PscI ACATGT 1 cut(s) 1230
Psp124BI GAGCTC 2 cut(s) 853, 1480
Psp6I CCWGG 4 cut(s) 84, 562, 1158, 1205
PspGI CCWGG 4 cut(s) 84, 562, 1158, 1205
PspN4I GGNNCC 5 cut(s) 15, 340, 577, 1248, 1431
PspPI GGNCC 2 cut(s) 338, 1430
PsrI GAACNNNNNNTAC 2 cut(s) 282, 314
PsuI RGATCY 2 cut(s) 13, 81
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 2 cut(s) 749, 759
SacI GAGCTC 2 cut(s) 853, 1480
SaqAI TTAA 8 cut(s) 156, 275, 417, 801, 984, 1055, 1098, 1385
SatI GCNGC 5 cut(s) 132, 837, 1080, 1156, 1164
Sau3AI GATC 7 cut(s) 13, 81, 318, 775, 864, 910, 1176
Sau96I GGNCC 2 cut(s) 338, 1430
SchI GAGTC 1 cut(s) 823
ScrFI CCNGG 4 cut(s) 86, 564, 1160, 1207
SduI GDGCHC 4 cut(s) 231, 580, 853, 1480
SfaNI GCATC 2 cut(s) 421, 741
SfcI CTRYAG 2 cut(s) 466, 840
SinI GGWCC 2 cut(s) 338, 1430
SmiMI CAYNNNNRTG 2 cut(s) 749, 759
SmlI CTYRAG 3 cut(s) 224, 416, 940
SmoI CTYRAG 3 cut(s) 224, 416, 940
SphI GCATGC 3 cut(s) 178, 758, 1170
SsiI CCGC 2 cut(s) 62, 1077
SspMI CTAG 3 cut(s) 65, 1301, 1555
SstI GAGCTC 2 cut(s) 853, 1480
StyD4I CCNGG 4 cut(s) 84, 562, 1158, 1205
TaaI ACNGT 2 cut(s) 389, 1001
TaiI ACGT 2 cut(s) 184, 872
TaqI TCGA 5 cut(s) 21, 923, 1113, 1179, 1375
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 2 cut(s) 23, 965
Tru1I TTAA 8 cut(s) 156, 275, 417, 801, 984, 1055, 1098, 1385
Tru9I TTAA 8 cut(s) 156, 275, 417, 801, 984, 1055, 1098, 1385
TscAI CASTG 2 cut(s) 223, 1025
TseFI GTSAC 2 cut(s) 790, 870
TseI GCWGC 5 cut(s) 131, 836, 1079, 1155, 1163
Tsp45I GTSAC 2 cut(s) 790, 870
TspDTI ATGAA 5 cut(s) 179, 690, 1010, 1058, 1208
TspGWI ACGGA 1 cut(s) 1325
TspRI CASTG 2 cut(s) 223, 1025
Vha464I CTTAAG 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 338, 1430
XapI RAATTY 2 cut(s) 347, 477
XceI RCATGY 4 cut(s) 178, 758, 1170, 1234
XcmI CCANNNNNNNNNTGG 1 cut(s) 1388
XmnI GAANNNNTTC 1 cut(s) 1400
XspI CTAG 3 cut(s) 65, 1301, 1555
Zsp2I ATGCAT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.