Rroxscaffold_2G00149660

Glycosyl transferase family 21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014355
Physical Location & Seq
Forward (+)
87192270 .. 87197508
5239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00149660.1

Sequence Viewer

Length: 1497 bp
ATGTCGACGACATTGGATCCTCTCGATTCGCTCCTCTTCTCTCTCAGCCGAACTCTCTGTACTCCCCTCGCCGTTTTCATTCAGCTTCAGGGATGTCTAATTTGTTTGATTCTGGCTTTAGGGTGGGCTTGTGCAGCTTATGTCAGGAATAGAGAGATTAAACGAATGAAGGATAGTATGAGACGGGGAAATAGCTTTGCTTTCCTTTGCCAGGACATCATGGAACTCGAGCACTCAAATCAGGCCAAGTTGCCGAGAGTATCTGTTGTTATGCCTTTGAAAGGATTTGGAGAACACAATTTACATAATTGGAGAAGTCAGATCACATCTCTCTATGGCGGTCCTTTAGAATTTCTTTTTGTGGTGGAAAGTACAGAAGACCCTGCTTACCGTGCTGTATCTGTGCTACTATCCGAGCTTAAGGATGAGGTTGAGGCTAAGATTGTTGTGGCTGGTCTTGCAACAACCTGCAGTCAGAAAATCCACAATCAATTGGTTGGAGTGGACAAAATGCACAAAGACAGCAAGTTTGTATTATTTTTGGATGACGATGTTAGGCTCCACCCTGGATCAATCGGAGCCCTAACTACTGAGATGGAGAAAAATCCTGATATCTTCATTCAAACTGGATACCCTCTCGATTTGCCTTCAGGAAGTTTAGGGAGTTACTGCATTTATGAATATCATATGATGCATGCGGATGATTTTAGACTTGATCGCTATGGTGTGGTCTCAGGGCTTAGAGATGGTGGTTACTCCGATGATATGACTCTTGCAGCTATAGCTGGGGCTCACAAGAGGCTCATCACATCACCTCCAGTTGCTGTCTTTCCTCATCCCCTTGCAAGTGATCTTAGTTTCTCAAGGTATTGGAATTACTTGAGGAAGCAGACATTTGTACTGGAATCATATTTAACAAAGGTTAATTGGATTATGAACCGGGCATTGTTTACTGTCCACTGCTATCTCTCATGGGGTTTTGTAACACCATACTTGATGGCCATGATTCATGTCACAGCAGCCCTACGAATGTATATTAAGGAGTATTCAGTTGAGGAAACAACCTTCACTTTTGGTGGTTTGACACTGGTAGGCTGCCTAGCTGTATGCACTATCGTGGAACTTCTATCAATGTGGAACTTGACAAGGATAGAAGTCCATCTATGCAACATGCTATCACCAGAGGCACCTAACCTCTCACTTGCTACATATAACTGGGGACTTGTATTCATTGCACTTCTTGTAGATAACTTTTTGTACCCCATCTCTGCCTTTCGTTCTCATTTTACTCAGTCTATCAATTGGTCGGGTATTCGATATCACCTAAAGAATGGGAAGATATTCAAGATTGAACGAAGTAAGGATATGGGTCCAATTTACACGGATTTGGGAGGAAAGCATTTAGGGAAGAAAGGAGCTCCTCCAAAGTTGTCATTCCTCAGCTCTTTGGCCAGAAGTTTGGCACAGTGGCATCAACCGAAGAAATATGATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_21

Protein Analysis

498

Amino Acids

56.16

Weight (kDa)

8.19

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19880 AT2G19880
fragaria_vesca FvH4_1g06110
malus_domestica MD02G1065600.v1.1 MD15G1196500.v1.1
prunus_persica Prupe.7G219900_v2.0.a1 Prupe.7G219900_v2.0.a1
pyrus_communis pycom02g05170 pycom15g17560
rosa_chinensis RchiOBHm_Chr2g0091861
rosa_laevigata RLG00000016258
rosa_multiflora Rmu_sc0010910.1_g000001
rosa_roxburghii Rroxscaffold_2G00149660
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066600 Rh2DG065600
rosa_wichuraiana Rw2G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 1186
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 339, 698
AclWI GGATC 3 cut(s) 11, 24, 577
AcoI YGGCCR 2 cut(s) 999, 1449
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 2 cut(s) 71, 633
AfaI GTAC 4 cut(s) 61, 373, 900, 1259
AfiI CCNNNNNNNGG 2 cut(s) 211, 281
AflII CTTAAG 1 cut(s) 419
AgsI TTSAA 4 cut(s) 280, 623, 1345, 1352
AjnI CCWGG 2 cut(s) 210, 565
AleI CACNNNNGTG 1 cut(s) 1115
Alw21I GWGCWC 2 cut(s) 234, 1420
Alw26I GTCTC 2 cut(s) 175, 736
AlwI GGATC 3 cut(s) 11, 24, 577
AlwNI CAGNNNCTG 1 cut(s) 824
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 3 cut(s) 243, 999, 1449
ApeKI GCWGC 4 cut(s) 134, 776, 1019, 1095
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
Asp700I GAANNNNTTC 1 cut(s) 1340
AspS9I GGNCC 2 cut(s) 341, 1370
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 3 cut(s) 804, 1170, 1313
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 2 cut(s) 341, 1370
BalI TGGCCA 2 cut(s) 1001, 1451
BamHI GGATCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 1186
BanII GRGCYC 3 cut(s) 583, 793, 1420
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 234, 1420
BbvCI CCTCAGC 1 cut(s) 1439
BbvI GCAGC 4 cut(s) 146, 788, 1031, 1082
BccI CCATC 5 cut(s) 589, 740, 991, 1167, 1271
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 212, 567
BciVI GTATCC 1 cut(s) 623
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 2 cut(s) 175, 736
BfaI CTAG 1 cut(s) 1100
BfmI CTRYAG 2 cut(s) 469, 780
BfrI CTTAAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 476
BfuI GTATCC 1 cut(s) 623
BisI GCNGC 4 cut(s) 135, 777, 1020, 1096
BlsI GCNGC 4 cut(s) 136, 778, 1021, 1097
Bme1390I CCNGG 3 cut(s) 212, 567, 941
Bme18I GGWCC 2 cut(s) 341, 1370
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 341, 1370
BmiI GGNNCC 5 cut(s) 18, 560, 580, 1188, 1371
BmrFI CCNGG 3 cut(s) 212, 567, 941
BmrI ACTGGG 1 cut(s) 1225
BmsI GCATC 2 cut(s) 681, 1480
BmuI ACTGGG 1 cut(s) 1225
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 801
Bpu10I CCTNAGC 1 cut(s) 1439
BpuEI CTTGAG 2 cut(s) 847, 901
BpuMI CCSGG 1 cut(s) 941
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 281
Bse1I ACTGG 5 cut(s) 631, 818, 906, 1092, 1220
Bse3DI GCAATG 1 cut(s) 1230
BseBI CCWGG 2 cut(s) 212, 567
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 5 cut(s) 98, 430, 550, 706, 835
BseLI CCNNNNNNNGG 2 cut(s) 211, 281
BseMI GCAATG 1 cut(s) 1230
BseMII CTCAG 5 cut(s) 58, 582, 747, 1304, 1453
BseNI ACTGG 5 cut(s) 631, 818, 906, 1092, 1220
BseRI GAGGAG 2 cut(s) 23, 1410
BseXI GCAGC 4 cut(s) 146, 788, 1031, 1082
BseYI CCCAGC 1 cut(s) 785
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 3 cut(s) 245, 1001, 1451
BshNI GGYRCC 1 cut(s) 1186
BsiHKAI GWGCWC 2 cut(s) 234, 1420
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 940
BslFI GGGAC 1 cut(s) 1233
BslI CCNNNNNNNGG 2 cut(s) 211, 281
BsmAI GTCTC 2 cut(s) 175, 736
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 1233
BsnI GGCC 3 cut(s) 245, 1001, 1451
Bso31I GGTCTC 1 cut(s) 736
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 4 cut(s) 234, 583, 793, 1420
Bsp143I GATC 5 cut(s) 16, 321, 569, 715, 850
BspACI CCGC 2 cut(s) 339, 698
BspANI GGCC 3 cut(s) 245, 1001, 1451
BspCNI CTCAG 5 cut(s) 57, 583, 746, 1303, 1452
BspLI GGNNCC 5 cut(s) 18, 560, 580, 1188, 1371
BspMAI CTGCAG 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 3 cut(s) 11, 24, 577
BspT107I GGYRCC 1 cut(s) 1186
BspTI CTTAAG 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 1230
BsrI ACTGG 5 cut(s) 631, 818, 906, 1092, 1220
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 5 cut(s) 16, 321, 569, 715, 850
Bst2UI CCWGG 2 cut(s) 212, 567
Bst4CI ACNGT 3 cut(s) 392, 955, 1467
Bst6I CTCTTC 1 cut(s) 41
BstAFI CTTAAG 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 8 cut(s) 44, 438, 591, 733, 740, 854, 1290, 1439
BstENI CCTNNNNNAGG 2 cut(s) 209, 279
BstF5I GGATG 5 cut(s) 98, 430, 550, 706, 835
BstKTI GATC 5 cut(s) 19, 324, 572, 718, 853
BstMAI GTCTC 2 cut(s) 175, 736
BstMBI GATC 5 cut(s) 16, 321, 569, 715, 850
BstMWI GCNNNNNNNGC 4 cut(s) 134, 392, 458, 782
BstNI CCWGG 2 cut(s) 212, 567
BstNSI RCATGY 2 cut(s) 698, 1174
BstSCI CCNGG 3 cut(s) 210, 565, 939
BstSFI CTRYAG 2 cut(s) 469, 780
BstV1I GCAGC 4 cut(s) 146, 788, 1031, 1082
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 1459
BstYI RGATCY 1 cut(s) 16
BsuI GTATCC 1 cut(s) 623
BsuRI GGCC 3 cut(s) 245, 1001, 1451
BtsCI GGATG 5 cut(s) 98, 430, 550, 706, 835
BtsI GCAGTG 1 cut(s) 958
BtsIMutI CAGTG 3 cut(s) 958, 1085, 1472
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 696
CaiI CAGNNNCTG 1 cut(s) 824
Cfr13I GGNCC 2 cut(s) 341, 1370
Csp6I GTAC 4 cut(s) 60, 372, 899, 1258
CviAII CATG 6 cut(s) 220, 695, 972, 1003, 1010, 1171
CviQI GTAC 4 cut(s) 60, 372, 899, 1258
DdeI CTNAG 8 cut(s) 44, 438, 591, 733, 740, 854, 1290, 1439
DpnI GATC 5 cut(s) 18, 323, 571, 717, 852
DpnII GATC 5 cut(s) 16, 321, 569, 715, 850
EaeI YGGCCR 2 cut(s) 999, 1449
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 1418
Eco24I GRGCYC 3 cut(s) 583, 793, 1420
Eco31I GGTCTC 1 cut(s) 736
Eco32I GATATC 2 cut(s) 613, 1319
Eco47I GGWCC 2 cut(s) 341, 1370
Eco53kI GAGCTC 1 cut(s) 1418
Eco57I CTGAAG 2 cut(s) 71, 633
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 1418
EcoNI CCTNNNNNAGG 2 cut(s) 209, 279
EcoRII CCWGG 2 cut(s) 210, 565
EcoRV GATATC 2 cut(s) 613, 1319
EcoT22I ATGCAT 1 cut(s) 696
EcoT38I GRGCYC 3 cut(s) 583, 793, 1420
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 6 cut(s) 223, 698, 975, 1006, 1013, 1174
FaqI GGGAC 1 cut(s) 1233
FatI CATG 6 cut(s) 219, 694, 971, 1002, 1009, 1170
FauNDI CATATG 1 cut(s) 687
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 135, 777, 1020, 1096
FokI GGATG 5 cut(s) 105, 437, 557, 713, 822
FriOI GRGCYC 3 cut(s) 583, 793, 1420
Fsp4HI GCNGC 4 cut(s) 135, 777, 1020, 1096
FspBI CTAG 1 cut(s) 1100
GluI GCNGC 4 cut(s) 135, 777, 1020, 1096
GsaI CCCAGC 1 cut(s) 789
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 3 cut(s) 245, 1001, 1451
HapII CCGG 1 cut(s) 940
Hin1II CATG 6 cut(s) 223, 698, 975, 1006, 1013, 1174
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 26, 109, 769, 905, 1006
HpaII CCGG 1 cut(s) 940
HphI GGTGA 3 cut(s) 804, 1170, 1313
Hpy166II GTNNAC 4 cut(s) 6, 505, 951, 958
Hpy188I TCNGA 5 cut(s) 321, 415, 477, 578, 760
Hpy188III TCNNGA 6 cut(s) 23, 145, 608, 638, 651, 1345
Hpy8I GTNNAC 4 cut(s) 6, 505, 951, 958
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 163, 657, 1075
HpyCH4III ACNGT 3 cut(s) 392, 955, 1467
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 392, 458, 782
HpyF3I CTNAG 8 cut(s) 44, 438, 591, 733, 740, 854, 1290, 1439
Hsp92II CATG 6 cut(s) 223, 698, 975, 1006, 1013, 1174
Kzo9I GATC 5 cut(s) 16, 321, 569, 715, 850
LmnI GCTCC 5 cut(s) 36, 564, 578, 1415, 1423
Lsp1109I GCAGC 4 cut(s) 146, 788, 1031, 1082
LweI GCATC 2 cut(s) 681, 1480
MaeI CTAG 1 cut(s) 1100
MaeIII GTNAC 4 cut(s) 665, 752, 982, 1012
MalI GATC 5 cut(s) 18, 323, 571, 717, 852
MboI GATC 5 cut(s) 16, 321, 569, 715, 850
MboII GAAGA 6 cut(s) 28, 389, 607, 1348, 1420, 1492
MfeI CAATTG 2 cut(s) 491, 1300
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 4 cut(s) 234, 583, 793, 1420
MlsI TGGCCA 2 cut(s) 1001, 1451
MluCI AATT 9 cut(s) 99, 298, 307, 350, 491, 874, 925, 1300, 1374
MluNI TGGCCA 2 cut(s) 1001, 1451
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 478
Mox20I TGGCCA 2 cut(s) 1001, 1451
Mph1103I ATGCAT 1 cut(s) 696
MroXI GAANNNNTTC 1 cut(s) 1340
MscI TGGCCA 2 cut(s) 1001, 1451
MseI TTAA 5 cut(s) 159, 420, 914, 924, 1038
MslI CAYNNNNRTG 2 cut(s) 699, 1115
Msp20I TGGCCA 2 cut(s) 1001, 1451
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 940
MspR9I CCNGG 3 cut(s) 212, 567, 941
MunI CAATTG 2 cut(s) 491, 1300
MvaI CCWGG 2 cut(s) 212, 567
MwoI GCNNNNNNNGC 4 cut(s) 134, 392, 458, 782
NciI CCSGG 1 cut(s) 941
NdeI CATATG 1 cut(s) 687
NdeII GATC 5 cut(s) 16, 321, 569, 715, 850
NlaIII CATG 6 cut(s) 223, 698, 975, 1006, 1013, 1174
NlaIV GGNNCC 5 cut(s) 18, 560, 580, 1188, 1371
NmeAIII GCCGAG 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 1012
NsiI ATGCAT 1 cut(s) 696
NspI RCATGY 2 cut(s) 698, 1174
OliI CACNNNNGTG 1 cut(s) 1115
PaeI GCATGC 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 1340
PfeI GAWTC 4 cut(s) 26, 109, 905, 1006
PkrI GCNGC 4 cut(s) 136, 778, 1021, 1097
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 1420
Psp6I CCWGG 2 cut(s) 210, 565
PspFI CCCAGC 1 cut(s) 785
PspGI CCWGG 2 cut(s) 210, 565
PspN4I GGNNCC 5 cut(s) 18, 560, 580, 1188, 1371
PspPI GGNCC 2 cut(s) 341, 1370
PspXI VCTCGAGB 1 cut(s) 227
PsrI GAACNNNNNNTAC 4 cut(s) 43, 75, 285, 317
PstI CTGCAG 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 4 cut(s) 61, 373, 900, 1259
RsaNI GTAC 4 cut(s) 60, 372, 899, 1258
RseI CAYNNNNRTG 2 cut(s) 699, 1115
SacI GAGCTC 1 cut(s) 1420
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 159, 420, 914, 924, 1038
SatI GCNGC 4 cut(s) 135, 777, 1020, 1096
Sau3AI GATC 5 cut(s) 16, 321, 569, 715, 850
Sau96I GGNCC 2 cut(s) 341, 1370
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 3 cut(s) 212, 567, 941
SduI GDGCHC 4 cut(s) 234, 583, 793, 1420
SfaNI GCATC 2 cut(s) 681, 1480
SfcI CTRYAG 2 cut(s) 469, 780
Sfr274I CTCGAG 1 cut(s) 227
SinI GGWCC 2 cut(s) 341, 1370
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 699, 1115
SmlI CTYRAG 4 cut(s) 227, 419, 862, 880
SmoI CTYRAG 4 cut(s) 227, 419, 862, 880
SphI GCATGC 1 cut(s) 698
Sse9I AATT 9 cut(s) 99, 298, 307, 350, 491, 874, 925, 1300, 1374
SsiI CCGC 2 cut(s) 339, 698
SspMI CTAG 1 cut(s) 1100
SstI GAGCTC 1 cut(s) 1420
StyD4I CCNGG 3 cut(s) 210, 565, 939
TaaI ACNGT 3 cut(s) 392, 955, 1467
TaqI TCGA 5 cut(s) 5, 24, 228, 639, 1315
TasI AATT 9 cut(s) 99, 298, 307, 350, 491, 874, 925, 1300, 1374
TatI WGTACW 3 cut(s) 59, 371, 898
TfiI GAWTC 4 cut(s) 26, 109, 905, 1006
Tru1I TTAA 5 cut(s) 159, 420, 914, 924, 1038
Tru9I TTAA 5 cut(s) 159, 420, 914, 924, 1038
TscAI CASTG 3 cut(s) 965, 1092, 1472
TseFI GTSAC 1 cut(s) 1012
TseI GCWGC 4 cut(s) 134, 776, 1019, 1095
Tsp45I GTSAC 1 cut(s) 1012
TspDTI ATGAA 7 cut(s) 67, 182, 607, 693, 950, 998, 1219
TspGWI ACGGA 1 cut(s) 1397
TspRI CASTG 3 cut(s) 965, 1092, 1472
Vha464I CTTAAG 1 cut(s) 419
VpaK11BI GGWCC 2 cut(s) 341, 1370
XagI CCTNNNNNAGG 2 cut(s) 209, 279
XapI RAATTY 1 cut(s) 350
XceI RCATGY 2 cut(s) 698, 1174
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 1340
XspI CTAG 1 cut(s) 1100
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.