AT2G20650

plant-type cell wall modification

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
8903343 .. 8907339
3997 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20650.1

Sequence Viewer

Length: 1680 bp
ATGAATAATCTGGGGAATTTTGGGGTTTGGGGATTCGGGTTCTTCTCCTTATCTATTTGGTTTGCGGTTCTGCAACAAGCTAATGGACTCAGACCCATAAGGGAGACTGCTCGGTCCTGGGGCGATGAGTGGCTCTTTGGCAAAAAAGAAAAAGGTGGAGCAGGACCGTTTTCTGCGTGGAATATAACAGGAACATATAGAGGCACATGGAAGTTTCTAGATACTGTAAATAGCTCTTCAAAGTTTCCAGATTTCAGAAAAGAAAGTGGTAACTCTGTCATTGAGTTAGTGACAAGTCCAACAAAAATTACTGGTGTGCATTATGTTCAGGGTGCAGTTGTTTTCCATGACGTATTTGACAATGAACACAATGTGGGTGGTGCCCAAATTAAAGTTGAAGGTGTATATATTTGGCCCTTTAGACAGCTCCGTCTTGTTGCTAACAGCGGAAAGAAGAGTGATTCAGGACTAGAAGACGATTATCTTCTCTCCAACCCCTATCATCTGCTCGGTATTTTTTCCTCCCAAGTATTTCAAGAATCTCCAAGAGACAGAATATTGAAACAGAAAACTTCTCCAATATATGAGATGGAGAAGCACTGCAATATCGAAATAGCTGCCCAAATATCCCAAAGCACTTCTAGTGAAAACAATGGGGACAAAGATCGTTATCAAATTGAAGGATTGATGGAAAGTCCTGCAGTAGATGATGAAGTAGATTGTTTTTCGCCATTGTCGCTGAATGCAACCTCCATAAACGTCGAAGTCTACTATAACAAGGCTGTGAACTATACATTGATGGTCACTTTTGTCTCGTTCCTCCAGGTTCTTTTATTGATCCGGCAAATGGAGCACAGTAACACACAATCCGGTGCCGCAAAGGTCTCTATAGTAATGATCGGGCAACAAGCCATCATGGATTCTTATTTATGCCTTTTACATCTCACAGCTGGGATTTTAGTTGAATCCCTGTTTAACGCTTTTGCAACAGCTGCGTTCTTCAAATTTGTAGTGTTTTCGATATTTGAGATGAGATATCTTCTGTCCATATGGAAAGCGACCAGGCCTTCAACCAGCGGTGAGGGCTGGGAAACAATGAGGCGTGAGCTCTCCTTTTTGTACAGCCGTTTCTATGGAATCCTTCTTGGAGGCATATTATTAATGTACGAGTTCCACAACTACATGCGGCCGATCCTCCTACTCATGTACTCATTTTGGATTCCCCAGATAGTTGCAAACGTTGTTCGTGATTCTCGAAAGCCTCTGCACCCATATTATATACTAGGGATGACTGTTACACGACTTGCTATACCGTTGTATGTTTTTGGTTGCCCGAAGAACTTCATGCGTGTAGAGCCCAGCAAGGCCTGGTGTGTAAGCCTGTGTGCATTCATGGGGTTTCAAGCTGGTGTTCTTCTTCTTCAGCATTATTTCGGGTCTCGTTGCTTTGTCCCTCGAAAGTTGCTACCTGAGAAATACAGCTACTACAGAAGACTCGATCATAATGTAAACCGAAGCAGGGACTGCGTAATCTGCATGACCACGATTGATCTCAGACACCGTATTAATGATTGCATGGTAACGCCGTGTGAGCATATATTCCACTCGGGATGCTTACAGAGATGGATGGATATAAAGATGGAGTGCCCAACATGTCGTCGCCCACTTCCTCCAGCTTAA

Protein Analysis

559

Amino Acids

63.94

Weight (kDa)

8.62

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921 PF11145 253 - 487 3.2e-98 Transmembrane E3 ligase/DUF2921 transmembrane domain
zf-RING_2 PF13639 508 - 553 8.1e-10 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 112, 429
AccB1I GGYRCC 2 cut(s) 380, 872
AccI GTMKAC 1 cut(s) 768
AciI CCGC 5 cut(s) 65, 447, 876, 1077, 1186
AclI AACGTT 1 cut(s) 1239
AclWI GGATC 2 cut(s) 832, 1186
AcoI YGGCCR 1 cut(s) 1187
AcsI RAATTY 2 cut(s) 16, 1004
AcuI CTGAAG 1 cut(s) 1406
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 3 cut(s) 1121, 1166, 1208
AfiI CCNNNNNNNGG 2 cut(s) 847, 1519
AflIII ACRYGT 1 cut(s) 1652
AgsI TTSAA 9 cut(s) 240, 398, 536, 562, 680, 965, 1003, 1071, 1403
AjnI CCWGG 4 cut(s) 116, 822, 1061, 1367
Alw21I GWGCWC 2 cut(s) 855, 1110
Alw26I GTCTC 5 cut(s) 98, 543, 817, 889, 1443
AlwI GGATC 2 cut(s) 832, 1186
AlwNI CAGNNNCTG 1 cut(s) 1524
Ama87I CYCGRG 1 cut(s) 1606
AoxI GGCC 4 cut(s) 413, 1064, 1187, 1365
ApeKI GCWGC 2 cut(s) 617, 992
ApoI RAATTY 2 cut(s) 16, 1004
AseI ATTAAT 2 cut(s) 1160, 1566
Asp700I GAANNNNTTC 1 cut(s) 1340
AspS9I GGNCC 3 cut(s) 114, 164, 414
AsuHPI GGTGA 1 cut(s) 1091
AvaI CYCGRG 1 cut(s) 1606
AvaII GGWCC 2 cut(s) 114, 164
BaeGI GKGCMC 2 cut(s) 385, 1649
BanI GGYRCC 2 cut(s) 380, 872
BanII GRGCYC 2 cut(s) 1110, 1359
BbsI GAAGAC 2 cut(s) 480, 1498
Bbv12I GWGCWC 2 cut(s) 855, 1110
BbvI GCAGC 2 cut(s) 604, 979
BccI CCATC 7 cut(s) 583, 682, 793, 920, 1617, 1621, 1633
BceAI ACGGC 2 cut(s) 1110, 1570
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 4 cut(s) 118, 824, 1063, 1369
BcoDI GTCTC 5 cut(s) 98, 543, 817, 889, 1443
BfaI CTAG 4 cut(s) 218, 470, 642, 1283
BfmI CTRYAG 3 cut(s) 699, 888, 1486
BisI GCNGC 4 cut(s) 618, 876, 993, 1187
BlsI GCNGC 4 cut(s) 619, 877, 994, 1188
Bme1390I CCNGG 4 cut(s) 118, 824, 1063, 1369
Bme18I GGWCC 2 cut(s) 114, 164
BmeT110I CYCGRG 1 cut(s) 1606
BmgT120I GGNCC 3 cut(s) 114, 164, 414
BmiI GGNNCC 2 cut(s) 382, 874
BmrFI CCNGG 4 cut(s) 118, 824, 1063, 1369
BmsI GCATC 1 cut(s) 1601
BpiI GAAGAC 2 cut(s) 480, 1498
BpmI CTGGAG 2 cut(s) 806, 1656
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 2 cut(s) 889, 1443
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 869
Bsc4I CCNNNNNNNGG 2 cut(s) 847, 1519
Bse1I ACTGG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 4 cut(s) 118, 824, 1063, 1369
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 1293, 1616, 1632
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 2 cut(s) 847, 1519
BseMII CTCAG 3 cut(s) 103, 1461, 1567
BseNI ACTGG 1 cut(s) 316
BseSI GKGCMC 2 cut(s) 385, 1649
BseX3I CGGCCG 1 cut(s) 1187
BseXI GCAGC 2 cut(s) 604, 979
BseYI CCCAGC 3 cut(s) 950, 1086, 1358
BsgI GTGCAG 2 cut(s) 354, 1250
Bsh1285I CGRYCG 1 cut(s) 1190
BshFI GGCC 4 cut(s) 415, 1066, 1189, 1367
BshNI GGYRCC 2 cut(s) 380, 872
BsiEI CGRYCG 1 cut(s) 1190
BsiHKAI GWGCWC 2 cut(s) 855, 1110
BsiHKCI CYCGRG 1 cut(s) 1606
BsiSI CCGG 2 cut(s) 841, 870
BslFI GGGAC 3 cut(s) 671, 1436, 1535
BslI CCNNNNNNNGG 2 cut(s) 847, 1519
BsmAI GTCTC 5 cut(s) 98, 543, 817, 889, 1443
BsmFI GGGAC 3 cut(s) 671, 1436, 1535
BsmI GAATGC 2 cut(s) 748, 1388
BsnI GGCC 4 cut(s) 415, 1066, 1189, 1367
Bso31I GGTCTC 2 cut(s) 889, 1443
BsoBI CYCGRG 1 cut(s) 1606
Bsp1286I GDGCHC 5 cut(s) 385, 855, 1110, 1359, 1649
Bsp1407I TGTACA 1 cut(s) 1119
Bsp143I GATC 6 cut(s) 664, 837, 897, 1191, 1498, 1549
BspACI CCGC 5 cut(s) 65, 447, 876, 1077, 1186
BspANI GGCC 4 cut(s) 415, 1066, 1189, 1367
BspCNI CTCAG 3 cut(s) 102, 1462, 1566
BspLI GGNNCC 2 cut(s) 382, 874
BspMAI CTGCAG 1 cut(s) 703
BspPI GGATC 2 cut(s) 832, 1186
BspQI GCTCTTC 1 cut(s) 241
BspT107I GGYRCC 2 cut(s) 380, 872
BspTNI GGTCTC 2 cut(s) 889, 1443
BsrGI TGTACA 1 cut(s) 1119
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 6 cut(s) 664, 837, 897, 1191, 1498, 1549
Bst2UI CCWGG 4 cut(s) 118, 824, 1063, 1369
Bst4CI ACNGT 6 cut(s) 168, 226, 857, 1294, 1314, 1562
Bst6I CTCTTC 2 cut(s) 241, 449
BstAPI GCANNNNNTGC 2 cut(s) 992, 1524
BstAUI TGTACA 1 cut(s) 1119
BstDEI CTNAG 3 cut(s) 89, 1470, 1553
BstF5I GGATG 3 cut(s) 1293, 1616, 1632
BstKTI GATC 6 cut(s) 667, 840, 900, 1194, 1501, 1552
BstMAI GTCTC 5 cut(s) 98, 543, 817, 889, 1443
BstMBI GATC 6 cut(s) 664, 837, 897, 1191, 1498, 1549
BstMCI CGRYCG 1 cut(s) 1190
BstMWI GCNNNNNNNGC 8 cut(s) 736, 850, 992, 1083, 1354, 1524, 1533, 1591
BstNI CCWGG 4 cut(s) 118, 824, 1063, 1369
BstNSI RCATGY 2 cut(s) 1186, 1656
BstSCI CCNGG 4 cut(s) 116, 822, 1061, 1367
BstSFI CTRYAG 3 cut(s) 699, 888, 1486
BstSLI GKGCMC 2 cut(s) 385, 1649
BstV1I GCAGC 2 cut(s) 604, 979
BstV2I GAAGAC 2 cut(s) 480, 1498
BstZI CGGCCG 1 cut(s) 1187
BsuRI GGCC 4 cut(s) 415, 1066, 1189, 1367
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 1293, 1616, 1632
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 1 cut(s) 598
CaiI CAGNNNCTG 1 cut(s) 1524
Cfr13I GGNCC 3 cut(s) 114, 164, 414
Csp6I GTAC 3 cut(s) 1120, 1165, 1207
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviQI GTAC 3 cut(s) 1120, 1165, 1207
DdeI CTNAG 3 cut(s) 89, 1470, 1553
DpnI GATC 6 cut(s) 666, 839, 899, 1193, 1500, 1551
DpnII GATC 6 cut(s) 664, 837, 897, 1191, 1498, 1549
DraIII CACNNNGTG 1 cut(s) 373
DrdI GACNNNNNNGTC 2 cut(s) 112, 429
DseDI GACNNNNNNGTC 2 cut(s) 112, 429
EaeI YGGCCR 1 cut(s) 1187
EagI CGGCCG 1 cut(s) 1187
Eam1104I CTCTTC 2 cut(s) 241, 449
EarI CTCTTC 2 cut(s) 241, 449
Ecl136II GAGCTC 1 cut(s) 1108
EclXI CGGCCG 1 cut(s) 1187
Eco147I AGGCCT 2 cut(s) 1066, 1367
Eco24I GRGCYC 2 cut(s) 1110, 1359
Eco31I GGTCTC 2 cut(s) 889, 1443
Eco32I GATATC 1 cut(s) 1037
Eco47I GGWCC 2 cut(s) 114, 164
Eco52I CGGCCG 1 cut(s) 1187
Eco53kI GAGCTC 1 cut(s) 1108
Eco57I CTGAAG 1 cut(s) 1406
Eco88I CYCGRG 1 cut(s) 1606
EcoICRI GAGCTC 1 cut(s) 1108
EcoRII CCWGG 4 cut(s) 116, 822, 1061, 1367
EcoRV GATATC 1 cut(s) 1037
EcoT38I GRGCYC 2 cut(s) 1110, 1359
FaqI GGGAC 3 cut(s) 671, 1436, 1535
FauNDI CATATG 1 cut(s) 1049
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 4 cut(s) 618, 876, 993, 1187
FokI GGATG 3 cut(s) 1300, 1623, 1639
FriOI GRGCYC 2 cut(s) 1110, 1359
Fsp4HI GCNGC 4 cut(s) 618, 876, 993, 1187
FspBI CTAG 4 cut(s) 218, 470, 642, 1283
GluI GCNGC 4 cut(s) 618, 876, 993, 1187
GsaI CCCAGC 3 cut(s) 954, 1090, 1362
GsuI CTGGAG 2 cut(s) 806, 1656
HaeIII GGCC 4 cut(s) 415, 1066, 1189, 1367
HapII CCGG 2 cut(s) 841, 870
HpaII CCGG 2 cut(s) 841, 870
HphI GGTGA 1 cut(s) 1091
Hpy166II GTNNAC 3 cut(s) 769, 787, 1510
Hpy188I TCNGA 3 cut(s) 92, 257, 1556
Hpy188III TCNNGA 7 cut(s) 218, 248, 465, 536, 1247, 1254, 1608
Hpy8I GTNNAC 3 cut(s) 769, 787, 1510
Hpy99I CGWCG 2 cut(s) 764, 1662
HpyAV CCTTC 4 cut(s) 392, 674, 1077, 1151
HpyCH4III ACNGT 6 cut(s) 168, 226, 857, 1294, 1314, 1562
HpyCH4IV ACGT 3 cut(s) 351, 759, 1239
HpyF10VI GCNNNNNNNGC 8 cut(s) 736, 850, 992, 1083, 1354, 1524, 1533, 1591
HpyF3I CTNAG 3 cut(s) 89, 1470, 1553
HpySE526I ACGT 3 cut(s) 351, 759, 1239
Kzo9I GATC 6 cut(s) 664, 837, 897, 1191, 1498, 1549
LguI GCTCTTC 1 cut(s) 241
LmnI GCTCC 3 cut(s) 158, 432, 850
Lsp1109I GCAGC 2 cut(s) 604, 979
LweI GCATC 1 cut(s) 1601
MaeI CTAG 4 cut(s) 218, 470, 642, 1283
MaeII ACGT 3 cut(s) 351, 759, 1239
MaeIII GTNAC 6 cut(s) 269, 289, 802, 857, 1294, 1579
MalI GATC 6 cut(s) 666, 839, 899, 1193, 1500, 1551
MboI GATC 6 cut(s) 664, 837, 897, 1191, 1498, 1549
MhlI GDGCHC 5 cut(s) 385, 855, 1110, 1359, 1649
MluCI AATT 5 cut(s) 16, 306, 387, 675, 1004
MlyI GAGTC 2 cut(s) 81, 1488
MmeI TCCRAC 2 cut(s) 323, 516
MroXI GAANNNNTTC 1 cut(s) 1340
MseI TTAA 5 cut(s) 390, 975, 1160, 1566, 1678
MspA1I CMGCKG 4 cut(s) 447, 950, 992, 1077
MspI CCGG 2 cut(s) 841, 870
MspR9I CCNGG 4 cut(s) 118, 824, 1063, 1369
Mva1269I GAATGC 2 cut(s) 748, 1388
MvaI CCWGG 4 cut(s) 118, 824, 1063, 1369
MwoI GCNNNNNNNGC 8 cut(s) 736, 850, 992, 1083, 1354, 1524, 1533, 1591
NdeI CATATG 1 cut(s) 1049
NdeII GATC 6 cut(s) 664, 837, 897, 1191, 1498, 1549
NlaIV GGNNCC 2 cut(s) 382, 874
NmuCI GTSAC 2 cut(s) 289, 802
NspI RCATGY 2 cut(s) 1186, 1656
PceI AGGCCT 2 cut(s) 1066, 1367
PciI ACATGT 1 cut(s) 1652
PciSI GCTCTTC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 1252
PctI GAATGC 2 cut(s) 748, 1388
PdmI GAANNNNTTC 1 cut(s) 1340
PfeI GAWTC 8 cut(s) 33, 461, 539, 920, 965, 1137, 1219, 1250
PkrI GCNGC 4 cut(s) 619, 877, 994, 1188
PleI GAGTC 2 cut(s) 81, 1488
PpsI GAGTC 2 cut(s) 81, 1488
PscI ACATGT 1 cut(s) 1652
PshBI ATTAAT 2 cut(s) 1160, 1566
Psp124BI GAGCTC 1 cut(s) 1110
Psp1406I AACGTT 1 cut(s) 1239
Psp6I CCWGG 4 cut(s) 116, 822, 1061, 1367
PspFI CCCAGC 3 cut(s) 950, 1086, 1358
PspGI CCWGG 4 cut(s) 116, 822, 1061, 1367
PspN4I GGNNCC 2 cut(s) 382, 874
PspPI GGNCC 3 cut(s) 114, 164, 414
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 1524
PvuII CAGCTG 2 cut(s) 950, 992
RsaI GTAC 3 cut(s) 1121, 1166, 1208
RsaNI GTAC 3 cut(s) 1120, 1165, 1207
SacI GAGCTC 1 cut(s) 1110
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 5 cut(s) 390, 975, 1160, 1566, 1678
SatI GCNGC 4 cut(s) 618, 876, 993, 1187
Sau3AI GATC 6 cut(s) 664, 837, 897, 1191, 1498, 1549
Sau96I GGNCC 3 cut(s) 114, 164, 414
SchI GAGTC 2 cut(s) 81, 1488
ScrFI CCNGG 4 cut(s) 118, 824, 1063, 1369
SduI GDGCHC 5 cut(s) 385, 855, 1110, 1359, 1649
SfaNI GCATC 1 cut(s) 1601
SfcI CTRYAG 3 cut(s) 699, 888, 1486
SinI GGWCC 2 cut(s) 114, 164
Sse9I AATT 5 cut(s) 16, 306, 387, 675, 1004
SseBI AGGCCT 2 cut(s) 1066, 1367
SsiI CCGC 5 cut(s) 65, 447, 876, 1077, 1186
SspI AATATT 1 cut(s) 558
SspMI CTAG 4 cut(s) 218, 470, 642, 1283
SstI GAGCTC 1 cut(s) 1110
StuI AGGCCT 2 cut(s) 1066, 1367
StyD4I CCNGG 4 cut(s) 116, 822, 1061, 1367
TaaI ACNGT 6 cut(s) 168, 226, 857, 1294, 1314, 1562
TaiI ACGT 3 cut(s) 354, 762, 1242
TaqI TCGA 6 cut(s) 609, 762, 1019, 1255, 1456, 1497
TaqII GACCGA 1 cut(s) 102
TasI AATT 5 cut(s) 16, 306, 387, 675, 1004
TatI WGTACW 2 cut(s) 1119, 1206
TauI GCSGC 2 cut(s) 878, 1189
TfiI GAWTC 8 cut(s) 33, 461, 539, 920, 965, 1137, 1219, 1250
Tru1I TTAA 5 cut(s) 390, 975, 1160, 1566, 1678
Tru9I TTAA 5 cut(s) 390, 975, 1160, 1566, 1678
TscAI CASTG 1 cut(s) 605
TseFI GTSAC 2 cut(s) 289, 802
TseI GCWGC 2 cut(s) 617, 992
Tsp45I GTSAC 2 cut(s) 289, 802
TspDTI ATGAA 5 cut(s) 17, 378, 726, 1333, 1381
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 114, 164
VspI ATTAAT 2 cut(s) 1160, 1566
XapI RAATTY 2 cut(s) 16, 1004
XbaI TCTAGA 1 cut(s) 217
XceI RCATGY 2 cut(s) 1186, 1656
XmiI GTMKAC 1 cut(s) 768
XmnI GAANNNNTTC 1 cut(s) 1340
XspI CTAG 4 cut(s) 218, 470, 642, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.