plant-type cell wall modification
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20650 AT2G20650 AT4G28370 AT4G28370 AT4G28370 AT4G28370 |
| fragaria_vesca | FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 |
| malus_domestica | MD09G1244500.v1.1 MD17G1236500.v1.1 |
| prunus_persica | Prupe.3G139300_v2.0.a1 Prupe.3G139300_v2.0.a1 |
| pyrus_communis | pycom09g16280 pycom17g23960 |
| rosa_chinensis | RchiOBHm_Chr2g0127681 |
| rosa_laevigata | RLG00000018942 |
| rosa_multiflora | Rmu_sc0005528.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00116670 |
| rosa_rugosa | Rorug02G0271600 |
| rosa_samantha | Rh2AG323800 Rh2BG333000 Rh2CG311400 |
| rosa_wichuraiana | Rw2G026290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 112, 429 |
| AccB1I | GGYRCC | 2 cut(s) | 380, 872 |
| AccI | GTMKAC | 1 cut(s) | 768 |
| AciI | CCGC | 5 cut(s) | 65, 447, 876, 1077, 1186 |
| AclI | AACGTT | 1 cut(s) | 1239 |
| AclWI | GGATC | 2 cut(s) | 832, 1186 |
| AcoI | YGGCCR | 1 cut(s) | 1187 |
| AcsI | RAATTY | 2 cut(s) | 16, 1004 |
| AcuI | CTGAAG | 1 cut(s) | 1406 |
| AdeI | CACNNNGTG | 1 cut(s) | 373 |
| AfaI | GTAC | 3 cut(s) | 1121, 1166, 1208 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 847, 1519 |
| AflIII | ACRYGT | 1 cut(s) | 1652 |
| AgsI | TTSAA | 9 cut(s) | 240, 398, 536, 562, 680, 965, 1003, 1071, 1403 |
| AjnI | CCWGG | 4 cut(s) | 116, 822, 1061, 1367 |
| Alw21I | GWGCWC | 2 cut(s) | 855, 1110 |
| Alw26I | GTCTC | 5 cut(s) | 98, 543, 817, 889, 1443 |
| AlwI | GGATC | 2 cut(s) | 832, 1186 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1524 |
| Ama87I | CYCGRG | 1 cut(s) | 1606 |
| AoxI | GGCC | 4 cut(s) | 413, 1064, 1187, 1365 |
| ApeKI | GCWGC | 2 cut(s) | 617, 992 |
| ApoI | RAATTY | 2 cut(s) | 16, 1004 |
| AseI | ATTAAT | 2 cut(s) | 1160, 1566 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1340 |
| AspS9I | GGNCC | 3 cut(s) | 114, 164, 414 |
| AsuHPI | GGTGA | 1 cut(s) | 1091 |
| AvaI | CYCGRG | 1 cut(s) | 1606 |
| AvaII | GGWCC | 2 cut(s) | 114, 164 |
| BaeGI | GKGCMC | 2 cut(s) | 385, 1649 |
| BanI | GGYRCC | 2 cut(s) | 380, 872 |
| BanII | GRGCYC | 2 cut(s) | 1110, 1359 |
| BbsI | GAAGAC | 2 cut(s) | 480, 1498 |
| Bbv12I | GWGCWC | 2 cut(s) | 855, 1110 |
| BbvI | GCAGC | 2 cut(s) | 604, 979 |
| BccI | CCATC | 7 cut(s) | 583, 682, 793, 920, 1617, 1621, 1633 |
| BceAI | ACGGC | 2 cut(s) | 1110, 1570 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 599, 633 |
| BciT130I | CCWGG | 4 cut(s) | 118, 824, 1063, 1369 |
| BcoDI | GTCTC | 5 cut(s) | 98, 543, 817, 889, 1443 |
| BfaI | CTAG | 4 cut(s) | 218, 470, 642, 1283 |
| BfmI | CTRYAG | 3 cut(s) | 699, 888, 1486 |
| BisI | GCNGC | 4 cut(s) | 618, 876, 993, 1187 |
| BlsI | GCNGC | 4 cut(s) | 619, 877, 994, 1188 |
| Bme1390I | CCNGG | 4 cut(s) | 118, 824, 1063, 1369 |
| Bme18I | GGWCC | 2 cut(s) | 114, 164 |
| BmeT110I | CYCGRG | 1 cut(s) | 1606 |
| BmgT120I | GGNCC | 3 cut(s) | 114, 164, 414 |
| BmiI | GGNNCC | 2 cut(s) | 382, 874 |
| BmrFI | CCNGG | 4 cut(s) | 118, 824, 1063, 1369 |
| BmsI | GCATC | 1 cut(s) | 1601 |
| BpiI | GAAGAC | 2 cut(s) | 480, 1498 |
| BpmI | CTGGAG | 2 cut(s) | 806, 1656 |
| BsaBI | GATNNNNATC | 1 cut(s) | 669 |
| BsaI | GGTCTC | 2 cut(s) | 889, 1443 |
| BsaJI | CCNNGG | 1 cut(s) | 117 |
| BsaWI | WCCGGW | 1 cut(s) | 869 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 847, 1519 |
| Bse1I | ACTGG | 1 cut(s) | 316 |
| Bse8I | GATNNNNATC | 1 cut(s) | 669 |
| BseBI | CCWGG | 4 cut(s) | 118, 824, 1063, 1369 |
| BseDI | CCNNGG | 1 cut(s) | 117 |
| BseGI | GGATG | 3 cut(s) | 1293, 1616, 1632 |
| BseJI | GATNNNNATC | 1 cut(s) | 669 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 847, 1519 |
| BseMII | CTCAG | 3 cut(s) | 103, 1461, 1567 |
| BseNI | ACTGG | 1 cut(s) | 316 |
| BseSI | GKGCMC | 2 cut(s) | 385, 1649 |
| BseX3I | CGGCCG | 1 cut(s) | 1187 |
| BseXI | GCAGC | 2 cut(s) | 604, 979 |
| BseYI | CCCAGC | 3 cut(s) | 950, 1086, 1358 |
| BsgI | GTGCAG | 2 cut(s) | 354, 1250 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1190 |
| BshFI | GGCC | 4 cut(s) | 415, 1066, 1189, 1367 |
| BshNI | GGYRCC | 2 cut(s) | 380, 872 |
| BsiEI | CGRYCG | 1 cut(s) | 1190 |
| BsiHKAI | GWGCWC | 2 cut(s) | 855, 1110 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1606 |
| BsiSI | CCGG | 2 cut(s) | 841, 870 |
| BslFI | GGGAC | 3 cut(s) | 671, 1436, 1535 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 847, 1519 |
| BsmAI | GTCTC | 5 cut(s) | 98, 543, 817, 889, 1443 |
| BsmFI | GGGAC | 3 cut(s) | 671, 1436, 1535 |
| BsmI | GAATGC | 2 cut(s) | 748, 1388 |
| BsnI | GGCC | 4 cut(s) | 415, 1066, 1189, 1367 |
| Bso31I | GGTCTC | 2 cut(s) | 889, 1443 |
| BsoBI | CYCGRG | 1 cut(s) | 1606 |
| Bsp1286I | GDGCHC | 5 cut(s) | 385, 855, 1110, 1359, 1649 |
| Bsp1407I | TGTACA | 1 cut(s) | 1119 |
| Bsp143I | GATC | 6 cut(s) | 664, 837, 897, 1191, 1498, 1549 |
| BspACI | CCGC | 5 cut(s) | 65, 447, 876, 1077, 1186 |
| BspANI | GGCC | 4 cut(s) | 415, 1066, 1189, 1367 |
| BspCNI | CTCAG | 3 cut(s) | 102, 1462, 1566 |
| BspLI | GGNNCC | 2 cut(s) | 382, 874 |
| BspMAI | CTGCAG | 1 cut(s) | 703 |
| BspPI | GGATC | 2 cut(s) | 832, 1186 |
| BspQI | GCTCTTC | 1 cut(s) | 241 |
| BspT107I | GGYRCC | 2 cut(s) | 380, 872 |
| BspTNI | GGTCTC | 2 cut(s) | 889, 1443 |
| BsrGI | TGTACA | 1 cut(s) | 1119 |
| BsrI | ACTGG | 1 cut(s) | 316 |
| BssECI | CCNNGG | 1 cut(s) | 117 |
| BssMI | GATC | 6 cut(s) | 664, 837, 897, 1191, 1498, 1549 |
| Bst2UI | CCWGG | 4 cut(s) | 118, 824, 1063, 1369 |
| Bst4CI | ACNGT | 6 cut(s) | 168, 226, 857, 1294, 1314, 1562 |
| Bst6I | CTCTTC | 2 cut(s) | 241, 449 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 992, 1524 |
| BstAUI | TGTACA | 1 cut(s) | 1119 |
| BstDEI | CTNAG | 3 cut(s) | 89, 1470, 1553 |
| BstF5I | GGATG | 3 cut(s) | 1293, 1616, 1632 |
| BstKTI | GATC | 6 cut(s) | 667, 840, 900, 1194, 1501, 1552 |
| BstMAI | GTCTC | 5 cut(s) | 98, 543, 817, 889, 1443 |
| BstMBI | GATC | 6 cut(s) | 664, 837, 897, 1191, 1498, 1549 |
| BstMCI | CGRYCG | 1 cut(s) | 1190 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 736, 850, 992, 1083, 1354, 1524, 1533, 1591 |
| BstNI | CCWGG | 4 cut(s) | 118, 824, 1063, 1369 |
| BstNSI | RCATGY | 2 cut(s) | 1186, 1656 |
| BstSCI | CCNGG | 4 cut(s) | 116, 822, 1061, 1367 |
| BstSFI | CTRYAG | 3 cut(s) | 699, 888, 1486 |
| BstSLI | GKGCMC | 2 cut(s) | 385, 1649 |
| BstV1I | GCAGC | 2 cut(s) | 604, 979 |
| BstV2I | GAAGAC | 2 cut(s) | 480, 1498 |
| BstZI | CGGCCG | 1 cut(s) | 1187 |
| BsuRI | GGCC | 4 cut(s) | 415, 1066, 1189, 1367 |
| BtgZI | GCGATG | 1 cut(s) | 138 |
| BtsCI | GGATG | 3 cut(s) | 1293, 1616, 1632 |
| BtsI | GCAGTG | 1 cut(s) | 598 |
| BtsIMutI | CAGTG | 1 cut(s) | 598 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1524 |
| Cfr13I | GGNCC | 3 cut(s) | 114, 164, 414 |
| Csp6I | GTAC | 3 cut(s) | 1120, 1165, 1207 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 358, 393 |
| CviQI | GTAC | 3 cut(s) | 1120, 1165, 1207 |
| DdeI | CTNAG | 3 cut(s) | 89, 1470, 1553 |
| DpnI | GATC | 6 cut(s) | 666, 839, 899, 1193, 1500, 1551 |
| DpnII | GATC | 6 cut(s) | 664, 837, 897, 1191, 1498, 1549 |
| DraIII | CACNNNGTG | 1 cut(s) | 373 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 112, 429 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 112, 429 |
| EaeI | YGGCCR | 1 cut(s) | 1187 |
| EagI | CGGCCG | 1 cut(s) | 1187 |
| Eam1104I | CTCTTC | 2 cut(s) | 241, 449 |
| EarI | CTCTTC | 2 cut(s) | 241, 449 |
| Ecl136II | GAGCTC | 1 cut(s) | 1108 |
| EclXI | CGGCCG | 1 cut(s) | 1187 |
| Eco147I | AGGCCT | 2 cut(s) | 1066, 1367 |
| Eco24I | GRGCYC | 2 cut(s) | 1110, 1359 |
| Eco31I | GGTCTC | 2 cut(s) | 889, 1443 |
| Eco32I | GATATC | 1 cut(s) | 1037 |
| Eco47I | GGWCC | 2 cut(s) | 114, 164 |
| Eco52I | CGGCCG | 1 cut(s) | 1187 |
| Eco53kI | GAGCTC | 1 cut(s) | 1108 |
| Eco57I | CTGAAG | 1 cut(s) | 1406 |
| Eco88I | CYCGRG | 1 cut(s) | 1606 |
| EcoICRI | GAGCTC | 1 cut(s) | 1108 |
| EcoRII | CCWGG | 4 cut(s) | 116, 822, 1061, 1367 |
| EcoRV | GATATC | 1 cut(s) | 1037 |
| EcoT38I | GRGCYC | 2 cut(s) | 1110, 1359 |
| FaqI | GGGAC | 3 cut(s) | 671, 1436, 1535 |
| FauNDI | CATATG | 1 cut(s) | 1049 |
| FblI | GTMKAC | 1 cut(s) | 768 |
| Fnu4HI | GCNGC | 4 cut(s) | 618, 876, 993, 1187 |
| FokI | GGATG | 3 cut(s) | 1300, 1623, 1639 |
| FriOI | GRGCYC | 2 cut(s) | 1110, 1359 |
| Fsp4HI | GCNGC | 4 cut(s) | 618, 876, 993, 1187 |
| FspBI | CTAG | 4 cut(s) | 218, 470, 642, 1283 |
| GluI | GCNGC | 4 cut(s) | 618, 876, 993, 1187 |
| GsaI | CCCAGC | 3 cut(s) | 954, 1090, 1362 |
| GsuI | CTGGAG | 2 cut(s) | 806, 1656 |
| HaeIII | GGCC | 4 cut(s) | 415, 1066, 1189, 1367 |
| HapII | CCGG | 2 cut(s) | 841, 870 |
| HpaII | CCGG | 2 cut(s) | 841, 870 |
| HphI | GGTGA | 1 cut(s) | 1091 |
| Hpy166II | GTNNAC | 3 cut(s) | 769, 787, 1510 |
| Hpy188I | TCNGA | 3 cut(s) | 92, 257, 1556 |
| Hpy188III | TCNNGA | 7 cut(s) | 218, 248, 465, 536, 1247, 1254, 1608 |
| Hpy8I | GTNNAC | 3 cut(s) | 769, 787, 1510 |
| Hpy99I | CGWCG | 2 cut(s) | 764, 1662 |
| HpyAV | CCTTC | 4 cut(s) | 392, 674, 1077, 1151 |
| HpyCH4III | ACNGT | 6 cut(s) | 168, 226, 857, 1294, 1314, 1562 |
| HpyCH4IV | ACGT | 3 cut(s) | 351, 759, 1239 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 736, 850, 992, 1083, 1354, 1524, 1533, 1591 |
| HpyF3I | CTNAG | 3 cut(s) | 89, 1470, 1553 |
| HpySE526I | ACGT | 3 cut(s) | 351, 759, 1239 |
| Kzo9I | GATC | 6 cut(s) | 664, 837, 897, 1191, 1498, 1549 |
| LguI | GCTCTTC | 1 cut(s) | 241 |
| LmnI | GCTCC | 3 cut(s) | 158, 432, 850 |
| Lsp1109I | GCAGC | 2 cut(s) | 604, 979 |
| LweI | GCATC | 1 cut(s) | 1601 |
| MaeI | CTAG | 4 cut(s) | 218, 470, 642, 1283 |
| MaeII | ACGT | 3 cut(s) | 351, 759, 1239 |
| MaeIII | GTNAC | 6 cut(s) | 269, 289, 802, 857, 1294, 1579 |
| MalI | GATC | 6 cut(s) | 666, 839, 899, 1193, 1500, 1551 |
| MboI | GATC | 6 cut(s) | 664, 837, 897, 1191, 1498, 1549 |
| MhlI | GDGCHC | 5 cut(s) | 385, 855, 1110, 1359, 1649 |
| MluCI | AATT | 5 cut(s) | 16, 306, 387, 675, 1004 |
| MlyI | GAGTC | 2 cut(s) | 81, 1488 |
| MmeI | TCCRAC | 2 cut(s) | 323, 516 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1340 |
| MseI | TTAA | 5 cut(s) | 390, 975, 1160, 1566, 1678 |
| MspA1I | CMGCKG | 4 cut(s) | 447, 950, 992, 1077 |
| MspI | CCGG | 2 cut(s) | 841, 870 |
| MspR9I | CCNGG | 4 cut(s) | 118, 824, 1063, 1369 |
| Mva1269I | GAATGC | 2 cut(s) | 748, 1388 |
| MvaI | CCWGG | 4 cut(s) | 118, 824, 1063, 1369 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 736, 850, 992, 1083, 1354, 1524, 1533, 1591 |
| NdeI | CATATG | 1 cut(s) | 1049 |
| NdeII | GATC | 6 cut(s) | 664, 837, 897, 1191, 1498, 1549 |
| NlaIV | GGNNCC | 2 cut(s) | 382, 874 |
| NmuCI | GTSAC | 2 cut(s) | 289, 802 |
| NspI | RCATGY | 2 cut(s) | 1186, 1656 |
| PceI | AGGCCT | 2 cut(s) | 1066, 1367 |
| PciI | ACATGT | 1 cut(s) | 1652 |
| PciSI | GCTCTTC | 1 cut(s) | 241 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1252 |
| PctI | GAATGC | 2 cut(s) | 748, 1388 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1340 |
| PfeI | GAWTC | 8 cut(s) | 33, 461, 539, 920, 965, 1137, 1219, 1250 |
| PkrI | GCNGC | 4 cut(s) | 619, 877, 994, 1188 |
| PleI | GAGTC | 2 cut(s) | 81, 1488 |
| PpsI | GAGTC | 2 cut(s) | 81, 1488 |
| PscI | ACATGT | 1 cut(s) | 1652 |
| PshBI | ATTAAT | 2 cut(s) | 1160, 1566 |
| Psp124BI | GAGCTC | 1 cut(s) | 1110 |
| Psp1406I | AACGTT | 1 cut(s) | 1239 |
| Psp6I | CCWGG | 4 cut(s) | 116, 822, 1061, 1367 |
| PspFI | CCCAGC | 3 cut(s) | 950, 1086, 1358 |
| PspGI | CCWGG | 4 cut(s) | 116, 822, 1061, 1367 |
| PspN4I | GGNNCC | 2 cut(s) | 382, 874 |
| PspPI | GGNCC | 3 cut(s) | 114, 164, 414 |
| PstI | CTGCAG | 1 cut(s) | 703 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1524 |
| PvuII | CAGCTG | 2 cut(s) | 950, 992 |
| RsaI | GTAC | 3 cut(s) | 1121, 1166, 1208 |
| RsaNI | GTAC | 3 cut(s) | 1120, 1165, 1207 |
| SacI | GAGCTC | 1 cut(s) | 1110 |
| SapI | GCTCTTC | 1 cut(s) | 241 |
| SaqAI | TTAA | 5 cut(s) | 390, 975, 1160, 1566, 1678 |
| SatI | GCNGC | 4 cut(s) | 618, 876, 993, 1187 |
| Sau3AI | GATC | 6 cut(s) | 664, 837, 897, 1191, 1498, 1549 |
| Sau96I | GGNCC | 3 cut(s) | 114, 164, 414 |
| SchI | GAGTC | 2 cut(s) | 81, 1488 |
| ScrFI | CCNGG | 4 cut(s) | 118, 824, 1063, 1369 |
| SduI | GDGCHC | 5 cut(s) | 385, 855, 1110, 1359, 1649 |
| SfaNI | GCATC | 1 cut(s) | 1601 |
| SfcI | CTRYAG | 3 cut(s) | 699, 888, 1486 |
| SinI | GGWCC | 2 cut(s) | 114, 164 |
| Sse9I | AATT | 5 cut(s) | 16, 306, 387, 675, 1004 |
| SseBI | AGGCCT | 2 cut(s) | 1066, 1367 |
| SsiI | CCGC | 5 cut(s) | 65, 447, 876, 1077, 1186 |
| SspI | AATATT | 1 cut(s) | 558 |
| SspMI | CTAG | 4 cut(s) | 218, 470, 642, 1283 |
| SstI | GAGCTC | 1 cut(s) | 1110 |
| StuI | AGGCCT | 2 cut(s) | 1066, 1367 |
| StyD4I | CCNGG | 4 cut(s) | 116, 822, 1061, 1367 |
| TaaI | ACNGT | 6 cut(s) | 168, 226, 857, 1294, 1314, 1562 |
| TaiI | ACGT | 3 cut(s) | 354, 762, 1242 |
| TaqI | TCGA | 6 cut(s) | 609, 762, 1019, 1255, 1456, 1497 |
| TaqII | GACCGA | 1 cut(s) | 102 |
| TasI | AATT | 5 cut(s) | 16, 306, 387, 675, 1004 |
| TatI | WGTACW | 2 cut(s) | 1119, 1206 |
| TauI | GCSGC | 2 cut(s) | 878, 1189 |
| TfiI | GAWTC | 8 cut(s) | 33, 461, 539, 920, 965, 1137, 1219, 1250 |
| Tru1I | TTAA | 5 cut(s) | 390, 975, 1160, 1566, 1678 |
| Tru9I | TTAA | 5 cut(s) | 390, 975, 1160, 1566, 1678 |
| TscAI | CASTG | 1 cut(s) | 605 |
| TseFI | GTSAC | 2 cut(s) | 289, 802 |
| TseI | GCWGC | 2 cut(s) | 617, 992 |
| Tsp45I | GTSAC | 2 cut(s) | 289, 802 |
| TspDTI | ATGAA | 5 cut(s) | 17, 378, 726, 1333, 1381 |
| TspGWI | ACGGA | 1 cut(s) | 419 |
| TspRI | CASTG | 1 cut(s) | 605 |
| VpaK11BI | GGWCC | 2 cut(s) | 114, 164 |
| VspI | ATTAAT | 2 cut(s) | 1160, 1566 |
| XapI | RAATTY | 2 cut(s) | 16, 1004 |
| XbaI | TCTAGA | 1 cut(s) | 217 |
| XceI | RCATGY | 2 cut(s) | 1186, 1656 |
| XmiI | GTMKAC | 1 cut(s) | 768 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1340 |
| XspI | CTAG | 4 cut(s) | 218, 470, 642, 1283 |