Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005528.1

Orthogroup ID

OG0006126

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 8534

Gene Structure 8534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005528.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1469 bp

ggacttggaagtttcctgattctgcaaatagctcttccagatttccagaatttaggaaatccagtggcaattccatcatcgaattagttagcacacaaacaaaaataatgggcgtacattatgtgcagggtgtaattatcttccatgatgtgtttgacaatgaacacaatgttgggggtgtccaaattagagtggaaggtgtatttatatggccgtttaaacagcttcgaatggtagctaacagtggaaaagagggagactcgagccaagaggaagattatattttgtctaacccgtaccatatgcttggagctttctcttcccaggttttccaagaatctccacgagataagctatggaggaaaaagcattcgccaatttatgaaatggagaaacattgtaatatagaaattgcaggccaaatttcacgtgtatcgtccgcccataatgatggagatcgcgatcgttaccaaatagaagggttgatggagagtcctgcagtggatgatgatggagattgcttctcacccttgatattaaatgctacttctgtcaatgtggaggtgtactataacaaagcagtgaactataccttgatggtcacctttatctccttcctacaagttcttctcttaattcggcaaatggaacatagcaatactcagtcgggggctgccaaagtttcgattctaatgattggccaacaggctatcatggatgcttatctttgccttctacacttgacagcaggaatacttgttgaatccttatttaatgcgtttgcaaccgctgcttttttcaagtttgttgtgttctcaatattcgagatgagataccttcttgctatatggaaagcaagtaggcctacaaatagtggagaaggttgggagacgatgaggcgtgagctttcagttttatatagccgtttctatggaattcttttaggaggcatcctggtcatgtacgagttccacaacttcctgagacctattcttctccttatgtactccttttggatacctcaaataatcaccaatgttatccgtgattcaagaaaacccttgcaccctcattacatcttaggcatgactgttactcggctagcaatcccgttatacatatttggttgccctaacaacttcatgcgcattgagcctgacaagagttggtgtatttgtttgagtttatttattggactgcaagcctcaattcttcttctccagcattatcttggctctcgttggttcattcctcgtcagattctacctgagaaatatagctaccacagaaggtctgatcaggatacaaatcatgccacagactgtgtcatttgcatgactgcaattgatctcacacagcgttcagatgattgcatggtgacaccatgcgatcatttctttcattccggatcaactgacatcacccaacacactaattttggttgggtattgaatccattttctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005975 GO:0005976 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009664 GO:0009791 GO:0009827 GO:0009845 GO:0009987 GO:0010154 GO:0010191 GO:0010393 GO:0010498 GO:0012505 GO:0016043 GO:0016567 GO:0016740 GO:0017144 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042545 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045229 GO:0045488 GO:0048316 GO:0048363 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0080001 GO:0090351 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

488

Amino Acids

55.92

Weight (kDa)

6.3

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20650 AT2G20650 AT4G28370 AT4G28370 AT4G28370 AT4G28370
fragaria_vesca	FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490
malus_domestica	MD09G1244500.v1.1 MD17G1236500.v1.1
prunus_persica	Prupe.3G139300_v2.0.a1 Prupe.3G139300_v2.0.a1
pyrus_communis	pycom09g16280 pycom17g23960
rosa_chinensis	RchiOBHm_Chr2g0127681
rosa_laevigata	RLG00000018942
rosa_multiflora	Rmu_sc0005528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116670
rosa_rugosa	Rorug02G0271600
rosa_samantha	Rh2AG323800 Rh2BG333000 Rh2CG311400
rosa_wichuraiana	Rw2G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1147
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	1 cut(s)	1405
AciI	CCGC	2 cut(s)	440, 788
AclWI	GGATC	1 cut(s)	1416
AcoI	YGGCCR	2 cut(s)	211, 699
AcsI	RAATTY	3 cut(s)	49, 422, 935
AcvI	CACGTG	1 cut(s)	430
AfaI	GTAC	5 cut(s)	116, 298, 568, 964, 1006
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	763, 801, 1052, 1452
AjnI	CCWGG	2 cut(s)	323, 953
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	7 cut(s)	32, 225, 238, 313, 354, 906, 1280
AluI	AGCT	7 cut(s)	32, 225, 238, 313, 354, 906, 1280
Alw26I	GTCTC	3 cut(s)	251, 883, 978
AlwI	GGATC	1 cut(s)	1416
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	1405
AoxI	GGCC	4 cut(s)	211, 417, 699, 862
ApeKI	GCWGC	2 cut(s)	673, 790
ApoI	RAATTY	3 cut(s)	49, 422, 935
AspLEI	GCGC	1 cut(s)	1148
AsuHPI	GGTGA	5 cut(s)	518, 594, 1023, 1389, 1413
AsuII	TTCGAA	1 cut(s)	228
AsuNHI	GCTAGC	1 cut(s)	1101
AvaI	CYCGRG	1 cut(s)	261
BalI	TGGCCA	1 cut(s)	701
BauI	CACGAG	1 cut(s)	344
BbrPI	CACGTG	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	660, 777
BccI	CCATC	5 cut(s)	82, 445, 480, 505, 591
BceAI	ACGGC	2 cut(s)	198, 908
BciT130I	CCWGG	2 cut(s)	325, 955
BciVI	GTATCC	2 cut(s)	1010, 1296
BclI	TGATCA	1 cut(s)	1296
BcoDI	GTCTC	3 cut(s)	251, 883, 978
BfaI	CTAG	1 cut(s)	1102
BfmI	CTRYAG	1 cut(s)	497
BfuI	GTATCC	2 cut(s)	1010, 1296
BisI	GCNGC	2 cut(s)	674, 791
BlsI	GCNGC	2 cut(s)	675, 792
Bme1390I	CCNGG	2 cut(s)	325, 955
BmeT110I	CYCGRG	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	325, 955
BmsI	GCATC	2 cut(s)	708, 959
BmtI	GCTAGC	1 cut(s)	1105
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	1 cut(s)	1204
Bpu14I	TTCGAA	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	430
BsaBI	GATNNNNATC	4 cut(s)	455, 461, 722, 1307
BsaI	GGTCTC	1 cut(s)	978
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	1405
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	4 cut(s)	455, 461, 722, 1307
BseAI	TCCGGA	1 cut(s)	1405
BseBI	CCWGG	2 cut(s)	325, 955
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	3 cut(s)	510, 723, 950
BseJI	GATNNNNATC	4 cut(s)	455, 461, 722, 1307
BseMII	CTCAG	3 cut(s)	676, 973, 1259
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	660, 777
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	4 cut(s)	213, 419, 701, 864
BsiEI	CGRYCG	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	1406
BsmAI	GTCTC	3 cut(s)	251, 883, 978
BsmBI	CGTCTC	1 cut(s)	883
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	4 cut(s)	213, 419, 701, 864
Bso31I	GGTCTC	1 cut(s)	978
BsoBI	CYCGRG	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	1405
Bsp143I	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
Bsp68I	TCGCGA	1 cut(s)	461
BspACI	CCGC	2 cut(s)	440, 788
BspANI	GGCC	4 cut(s)	213, 419, 701, 864
BspCNI	CTCAG	3 cut(s)	675, 974, 1260
BspEI	TCCGGA	1 cut(s)	1405
BspFNI	CGCG	1 cut(s)	461
BspMAI	CTGCAG	1 cut(s)	501
BspOI	GCTAGC	1 cut(s)	1105
BspPI	GGATC	1 cut(s)	1416
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	978
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
BssSI	CACGAG	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	325, 955
Bst4CI	ACNGT	3 cut(s)	244, 1092, 1324
Bst6I	CTCTTC	2 cut(s)	39, 324
BstAPI	GCANNNNNTGC	1 cut(s)	790
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	417, 1103, 1202
BstDEI	CTNAG	4 cut(s)	662, 982, 1080, 1268
BstEII	GGTNACC	1 cut(s)	600
BstF5I	GGATG	3 cut(s)	510, 723, 950
BstFNI	CGCG	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	1148
BstKTI	GATC	6 cut(s)	459, 465, 1299, 1350, 1392, 1411
BstMAI	GTCTC	3 cut(s)	251, 883, 978
BstMBI	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	2 cut(s)	790, 1152
BstNI	CCWGG	2 cut(s)	325, 955
BstPI	GGTNACC	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	323, 953
BstSFI	CTRYAG	1 cut(s)	497
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	660, 777
BstXI	CCANNNNNNTGG	2 cut(s)	307, 451
BsuI	GTATCC	2 cut(s)	1010, 1296
BsuRI	GGCC	4 cut(s)	213, 419, 701, 864
BtsCI	GGATG	3 cut(s)	510, 723, 950
BtsI	GCAGTG	2 cut(s)	506, 587
BtsIMutI	CAGTG	4 cut(s)	69, 249, 506, 587
BtuMI	TCGCGA	1 cut(s)	461
Cac8I	GCNNGC	3 cut(s)	417, 1103, 1202
CfoI	GCGC	1 cut(s)	1148
Csp6I	GTAC	5 cut(s)	115, 297, 567, 963, 1005
CviAII	CATG	9 cut(s)	145, 714, 960, 1086, 1143, 1312, 1335, 1374, 1385
CviQI	GTAC	5 cut(s)	115, 297, 567, 963, 1005
DdeI	CTNAG	4 cut(s)	662, 982, 1080, 1268
DpnI	GATC	6 cut(s)	458, 464, 1298, 1349, 1391, 1410
DpnII	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
DraI	TTTAAA	1 cut(s)	219
EaeI	YGGCCR	2 cut(s)	211, 699
Eam1104I	CTCTTC	2 cut(s)	39, 324
EarI	CTCTTC	2 cut(s)	39, 324
EciI	GGCGGA	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	864
Eco31I	GGTCTC	1 cut(s)	978
Eco72I	CACGTG	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	600
EcoO65I	GGTNACC	1 cut(s)	600
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	2 cut(s)	323, 953
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	9 cut(s)	148, 717, 963, 1089, 1146, 1315, 1338, 1377, 1388
FatI	CATG	9 cut(s)	144, 713, 959, 1085, 1142, 1311, 1334, 1373, 1384
FauNDI	CATATG	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	1296
Fnu4HI	GCNGC	2 cut(s)	674, 791
FokI	GGATG	3 cut(s)	517, 730, 937
Fsp4HI	GCNGC	2 cut(s)	674, 791
FspAI	RTGCGCAY	1 cut(s)	1147
FspBI	CTAG	1 cut(s)	1102
FspI	TGCGCA	1 cut(s)	1147
GlaI	GCGC	1 cut(s)	1147
GluI	GCNGC	2 cut(s)	674, 791
GsuI	CTGGAG	1 cut(s)	1204
HaeIII	GGCC	4 cut(s)	213, 419, 701, 864
HapII	CCGG	1 cut(s)	1406
HhaI	GCGC	1 cut(s)	1148
Hin1II	CATG	9 cut(s)	148, 717, 963, 1089, 1146, 1315, 1338, 1377, 1388
Hin6I	GCGC	1 cut(s)	1146
HinP1I	GCGC	1 cut(s)	1146
HinfI	GANTC	9 cut(s)	19, 259, 337, 492, 687, 763, 1048, 1260, 1452
HpaII	CCGG	1 cut(s)	1406
HphI	GGTGA	5 cut(s)	518, 594, 1023, 1389, 1413
Hpy166II	GTNNAC	2 cut(s)	567, 585
Hpy188I	TCNGA	3 cut(s)	1259, 1296, 1365
Hpy188III	TCNNGA	9 cut(s)	16, 38, 46, 460, 825, 981, 1052, 1300, 1406
Hpy8I	GTNNAC	2 cut(s)	567, 585
HpyAV	CCTTC	7 cut(s)	190, 472, 624, 742, 847, 874, 1283
HpyCH4III	ACNGT	3 cut(s)	244, 1092, 1324
HpyCH4IV	ACGT	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	790, 1152
HpyF3I	CTNAG	4 cut(s)	662, 982, 1080, 1268
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	9 cut(s)	148, 717, 963, 1089, 1146, 1315, 1338, 1377, 1388
HspAI	GCGC	1 cut(s)	1146
Kpn2I	TCCGGA	1 cut(s)	1405
Ksp22I	TGATCA	1 cut(s)	1296
Kzo9I	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	660, 777
LweI	GCATC	2 cut(s)	708, 959
MaeI	CTAG	1 cut(s)	1102
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	4 cut(s)	466, 600, 1092, 1377
MalI	GATC	6 cut(s)	458, 464, 1298, 1349, 1391, 1410
MboI	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
MboII	GAAGA	8 cut(s)	26, 132, 286, 311, 619, 985, 1204, 1207
MfeI	CAATTG	1 cut(s)	1343
MlsI	TGGCCA	1 cut(s)	701
MluNI	TGGCCA	1 cut(s)	701
MlyI	GAGTC	2 cut(s)	253, 501
Mox20I	TGGCCA	1 cut(s)	701
MroI	TCCGGA	1 cut(s)	1405
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	4 cut(s)	218, 538, 634, 773
MslI	CAYNNNNRTG	2 cut(s)	449, 1333
Msp20I	TGGCCA	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	1 cut(s)	1406
MspR9I	CCNGG	2 cut(s)	325, 955
MssI	GTTTAAAC	1 cut(s)	219
MunI	CAATTG	1 cut(s)	1343
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	325, 955
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	790, 1152
NdeI	CATATG	1 cut(s)	302
NdeII	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
NheI	GCTAGC	1 cut(s)	1101
NlaIII	CATG	9 cut(s)	148, 717, 963, 1089, 1146, 1315, 1338, 1377, 1388
NmeAIII	GCCGAG	1 cut(s)	1077
NmuCI	GTSAC	2 cut(s)	600, 1377
NruI	TCGCGA	1 cut(s)	461
NsbI	TGCGCA	1 cut(s)	1147
NspV	TTCGAA	1 cut(s)	228
PaeR7I	CTCGAG	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	864
PciSI	GCTCTTC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	7 cut(s)	19, 337, 687, 763, 1048, 1260, 1452
PflFI	GACNNNGTC	1 cut(s)	1324
PkrI	GCNGC	2 cut(s)	675, 792
Ple19I	CGATCG	1 cut(s)	465
PleI	GAGTC	2 cut(s)	253, 500
PmaCI	CACGTG	1 cut(s)	430
PmeI	GTTTAAAC	1 cut(s)	219
PmlI	CACGTG	1 cut(s)	430
PpsI	GAGTC	2 cut(s)	253, 500
Ppu21I	YACGTR	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	323, 953
PspCI	CACGTG	1 cut(s)	430
PspEI	GGTNACC	1 cut(s)	600
PspGI	CCWGG	2 cut(s)	323, 953
PspXI	VCTCGAGB	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	501
PsyI	GACNNNGTC	1 cut(s)	1324
PvuI	CGATCG	1 cut(s)	465
RruI	TCGCGA	1 cut(s)	461
RsaI	GTAC	5 cut(s)	116, 298, 568, 964, 1006
RsaNI	GTAC	5 cut(s)	115, 297, 567, 963, 1005
RseI	CAYNNNNRTG	2 cut(s)	449, 1333
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	4 cut(s)	218, 538, 634, 773
SatI	GCNGC	2 cut(s)	674, 791
Sau3AI	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
SchI	GAGTC	2 cut(s)	253, 501
ScrFI	CCNGG	2 cut(s)	325, 955
SfaNI	GCATC	2 cut(s)	708, 959
SfcI	CTRYAG	1 cut(s)	497
Sfr274I	CTCGAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	449, 1333
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	2 cut(s)	440, 788
SspI	AATATT	1 cut(s)	821
SspMI	CTAG	1 cut(s)	1102
StuI	AGGCCT	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	323, 953
TaaI	ACNGT	3 cut(s)	244, 1092, 1324
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	5 cut(s)	80, 228, 262, 685, 824
TatI	WGTACW	2 cut(s)	566, 1004
TfiI	GAWTC	7 cut(s)	19, 337, 687, 763, 1048, 1260, 1452
Tru1I	TTAA	4 cut(s)	218, 538, 634, 773
Tru9I	TTAA	4 cut(s)	218, 538, 634, 773
TscAI	CASTG	4 cut(s)	69, 249, 506, 587
TseFI	GTSAC	2 cut(s)	600, 1377
TseI	GCWGC	2 cut(s)	673, 790
Tsp45I	GTSAC	2 cut(s)	600, 1377
TspDTI	ATGAA	5 cut(s)	176, 398, 1131, 1236, 1390
TspGWI	ACGGA	1 cut(s)	1033
TspRI	CASTG	4 cut(s)	69, 249, 506, 587
Tth111I	GACNNNGTC	1 cut(s)	1324
XapI	RAATTY	3 cut(s)	49, 422, 935
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1228
XhoI	CTCGAG	1 cut(s)	261
XspI	CTAG	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.