Prupe.3G139300_v2.0.a1

Transmembrane E3 ubiquitin-protein ligase 1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
14700223 .. 14711726
11504 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G139300.1

Sequence Viewer

Length: 1731 bp
ATGGGTTGCTTGAGTTTGGATATGGGGGTCGTGAAAATTTTGGGGTTTTTGTGGTCTCAGAGAAGGAAGTTGAGGTTTCTATACTGGGTTGCATTCTGGTTGTGTGTAGCTTTGGTGCTTTTTCAGCCGGTGGCGGGTCTCAGACCCTTGCGGGAAAGGGCTCGCTCGTGGGGTGATGAGTGGCTATTTGTAAGAAAGGATGAAAGTGATTTGGGTCCATTTTCTACGTGGAACATAACAGGAACTTACAGAGGGACTTGGAAGTTTCCTGATTCTGCAAATAGCTCTTCCAGATTTCCGGATTTTAGAAAATCCGACGGCAACTCTATCATCGAATTAGTTAGCACGCAAACAAAAATAACTGGCGTACATTACGTGCAGGGTGTAATTATTTTCCATGATGTGTTCGACAATGAACACAATGTTGGTGGTGTTCAAATCAAGGTGGAAGGTGTATTTATATGGCCGTTTAGACAACTTCGAATGGTAGCTAACAGTGGAAAAGAGGGAGAGTCCAGTCAAGAAGAAGATTATATGTTGTCAAATCCGTATCATATGCTTGGAGTTTTCTCTTCCCAGGTTTTCCAAGATTCTCCTCGAGATAAGATATGGAGGAAAAGGCATTCTCCAATTTATGAAATGGAGAAACATTGTAATATAGAAATTGCGGGCCAAATTTCACGTGTCTCATCCCCACATAATGATGGTGATCGTGATCGTTACCACATAGAAGCATTGATGGAGAGTCCTGCAGTGGATGATGATGGAGATTGCTTCTCACCCTTGGTACTAAATGCTACTTCTGTCAACGTTGAGGTGTACTACAACAAAGCAGTGAACTATACCTTGATGGTCACCTTTGTCTCCTTTCTCCAAGTTCTTCTCTTAATTCGCCAAATGGAACATAGCAACACTCAGTCGGGTGCTGCCAAAGTTTCAATTCTAATGATTGGCCAACAGGCTATCATGGATGCTTATCTTTGCCTTCTACATTTGACCGCAGGGATACTTGTTGAATCCTTATTTAATGCTTTTGCGACTGCCGCTTTTTTCAAGTTTGTTGTCTTCTCAATATTTGAGATGAGATATCTTCTTGCTATATGGAAAGCTAGTAGGCCGACAAATAGTGGAGAAGGTTGGGAGACAATGAGGCGTGAGCTTTCAGTTTTATATAGCCGTTTCTATGGGATCCTTTTGGGAGGCATTCTGTTCATGTATGAGTTCCATAACTTCCTGAGACCTATTCTTCTCCTTATGTACTCATTTTGGATACCACAAATAATCACCAATGTTATTCGTGATTCGAGGAAACCATTGCATCCTCATTACATCTTAGGCATGACTGTTACTCGGCTTGCAATCCCGTTATACATATTTGGTTGCCCTAACAACTTCATGCGTATTGAGCCCGACAAGAGCTGGTGTATTTGTTTGGGTGTATTTATTGGACTGCAAGCATCAATTCTTCTTCTTCAGCACTATCTTGGCTCTCGGTGGTTCATTCCTCGTCAGATTCTACCTGAAAAATATAGCTACTTTAGAAGGTACGATCAGGATACACATCACACAACAGACTGTGTCATTTGCATGACTGCAGTTGATCTCACGCAGCGTTCAAATGATTGCATGGTGACACCATGCGACCATTTCTTTCATTCAGGTTGTTTACAAAGGTGGATGGATATAAAGATGGAGTGCCCAACTTGTCGGCGTCCACTGCCACCAGCCTGA

Protein Analysis

577

Amino Acids

66.61

Weight (kDa)

7.88

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 5 cut(s) 134, 151, 668, 999, 1044
AclI AACGTT 1 cut(s) 810
AclWI GGATC 2 cut(s) 1183, 1196
AcoI YGGCCR 2 cut(s) 464, 952
AcsI RAATTY 2 cut(s) 36, 675
AcuI CTGAAG 1 cut(s) 1457
AcvI CACGTG 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 1711
AfaI GTAC 5 cut(s) 369, 789, 821, 1259, 1547
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 5 cut(s) 437, 939, 1016, 1054, 1617
AjnI CCWGG 1 cut(s) 576
AjuI GAANNNNNNNTTGG 2 cut(s) 408, 440
AluBI AGCT 7 cut(s) 110, 285, 491, 1109, 1159, 1419, 1533
AluI AGCT 7 cut(s) 110, 285, 491, 1109, 1159, 1419, 1533
Alw26I GTCTC 6 cut(s) 60, 143, 691, 868, 1136, 1231
AlwI GGATC 2 cut(s) 1183, 1196
Ama87I CYCGRG 1 cut(s) 597
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 4 cut(s) 464, 670, 952, 1115
ApeKI GCWGC 2 cut(s) 926, 1609
ApoI RAATTY 2 cut(s) 36, 675
AspS9I GGNCC 2 cut(s) 215, 670
AsuHPI GGTGA 6 cut(s) 185, 719, 771, 847, 1276, 1642
AsuII TTCGAA 1 cut(s) 481
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 1700
BalI TGGCCA 1 cut(s) 954
BamHI GGATCC 1 cut(s) 1188
BanII GRGCYC 2 cut(s) 163, 1410
BauI CACGAG 1 cut(s) 166
BbrPI CACGTG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 1057
BbvI GCAGC 2 cut(s) 913, 1621
BccI CCATC 6 cut(s) 698, 733, 758, 844, 1672, 1684
BceAI ACGGC 3 cut(s) 334, 451, 1161
BciT130I CCWGG 1 cut(s) 578
BciVI GTATCC 3 cut(s) 999, 1263, 1549
BcoDI GTCTC 6 cut(s) 60, 143, 691, 868, 1136, 1231
BfaI CTAG 1 cut(s) 1110
BfmI CTRYAG 2 cut(s) 750, 1593
BfuI GTATCC 3 cut(s) 999, 1263, 1549
BisI GCNGC 3 cut(s) 927, 1044, 1610
BlsI GCNGC 3 cut(s) 928, 1045, 1611
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 597
BmgT120I GGNCC 2 cut(s) 215, 670
BmiI GGNNCC 2 cut(s) 216, 1190
BmrFI CCNGG 1 cut(s) 578
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 3 cut(s) 961, 1327, 1466
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 1057
Bpu14I TTCGAA 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 31
BsaAI YACGTR 3 cut(s) 228, 376, 683
BsaBI GATNNNNATC 4 cut(s) 708, 714, 975, 1560
BsaHI GRCGYC 1 cut(s) 1711
BsaI GGTCTC 3 cut(s) 60, 143, 1231
BsaJI CCNNGG 2 cut(s) 576, 783
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 3 cut(s) 89, 367, 516
Bse3DI GCAATG 1 cut(s) 1313
Bse8I GATNNNNATC 4 cut(s) 708, 714, 975, 1560
BseAI TCCGGA 1 cut(s) 298
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 2 cut(s) 576, 783
BseGI GGATG 6 cut(s) 205, 689, 763, 976, 1318, 1683
BseJI GATNNNNATC 4 cut(s) 708, 714, 975, 1560
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 1 cut(s) 1313
BseMII CTCAG 4 cut(s) 71, 154, 929, 1226
BseNI ACTGG 3 cut(s) 89, 367, 516
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 1700
BseXI GCAGC 2 cut(s) 913, 1621
BsgI GTGCAG 1 cut(s) 398
BshFI GGCC 4 cut(s) 466, 672, 954, 1117
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 2 cut(s) 128, 299
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 6 cut(s) 60, 143, 691, 868, 1136, 1231
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 3 cut(s) 92, 622, 1203
BsnI GGCC 4 cut(s) 466, 672, 954, 1117
Bso31I GGTCTC 3 cut(s) 60, 143, 1231
BsoBI CYCGRG 1 cut(s) 597
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 3 cut(s) 163, 1410, 1700
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 5 cut(s) 709, 715, 1188, 1549, 1600
BspACI CCGC 5 cut(s) 134, 151, 668, 999, 1044
BspANI GGCC 4 cut(s) 466, 672, 954, 1117
BspCNI CTCAG 4 cut(s) 70, 153, 928, 1227
BspEI TCCGGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 216, 1190
BspMAI CTGCAG 2 cut(s) 754, 1597
BspPI GGATC 2 cut(s) 1183, 1196
BspQI GCTCTTC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 481
BspTNI GGTCTC 3 cut(s) 60, 143, 1231
BsrDI GCAATG 1 cut(s) 1313
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 3 cut(s) 89, 367, 516
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 576, 783
BssMI GATC 5 cut(s) 709, 715, 1188, 1549, 1600
BssNI GRCGYC 1 cut(s) 1711
BssSI CACGAG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 783
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 3 cut(s) 497, 1345, 1577
Bst6I CTCTTC 2 cut(s) 292, 577
BstACI GRCGYC 1 cut(s) 1711
BstBAI YACGTR 3 cut(s) 228, 376, 683
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 5 cut(s) 163, 347, 670, 1356, 1455
BstDEI CTNAG 5 cut(s) 57, 140, 915, 1235, 1333
BstEII GGTNACC 1 cut(s) 853
BstF5I GGATG 6 cut(s) 205, 689, 763, 976, 1318, 1683
BstKTI GATC 5 cut(s) 712, 718, 1191, 1552, 1603
BstMAI GTCTC 6 cut(s) 60, 143, 691, 868, 1136, 1231
BstMBI GATC 5 cut(s) 709, 715, 1188, 1549, 1600
BstMWI GCNNNNNNNGC 4 cut(s) 124, 1043, 1405, 1717
BstNI CCWGG 1 cut(s) 578
BstPI GGTNACC 1 cut(s) 853
BstSCI CCNGG 1 cut(s) 576
BstSFI CTRYAG 2 cut(s) 750, 1593
BstSLI GKGCMC 1 cut(s) 1700
BstV1I GCAGC 2 cut(s) 913, 1621
BstV2I GAAGAC 1 cut(s) 1057
BstX2I RGATCY 1 cut(s) 1188
BstYI RGATCY 1 cut(s) 1188
BsuI GTATCC 3 cut(s) 999, 1263, 1549
BsuRI GGCC 4 cut(s) 466, 672, 954, 1117
BtsCI GGATG 6 cut(s) 205, 689, 763, 976, 1318, 1683
BtsI GCAGTG 3 cut(s) 759, 840, 1715
BtsIMutI CAGTG 4 cut(s) 502, 759, 840, 1715
Cac8I GCNNGC 5 cut(s) 163, 347, 670, 1356, 1455
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 215, 670
CseI GACGC 1 cut(s) 1700
Csp6I GTAC 5 cut(s) 368, 788, 820, 1258, 1546
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 8 cut(s) 398, 967, 1213, 1339, 1396, 1588, 1627, 1638
CviQI GTAC 5 cut(s) 368, 788, 820, 1258, 1546
DdeI CTNAG 5 cut(s) 57, 140, 915, 1235, 1333
DpnI GATC 5 cut(s) 711, 717, 1190, 1551, 1602
DpnII GATC 5 cut(s) 709, 715, 1188, 1549, 1600
EaeI YGGCCR 2 cut(s) 464, 952
Eam1104I CTCTTC 2 cut(s) 292, 577
EarI CTCTTC 2 cut(s) 292, 577
Eco130I CCWWGG 1 cut(s) 783
Eco24I GRGCYC 2 cut(s) 163, 1410
Eco31I GGTCTC 3 cut(s) 60, 143, 1231
Eco32I GATATC 1 cut(s) 1088
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 1457
Eco72I CACGTG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 853
EcoO65I GGTNACC 1 cut(s) 853
EcoRII CCWGG 1 cut(s) 576
EcoRV GATATC 1 cut(s) 1088
EcoT14I CCWWGG 1 cut(s) 783
EcoT38I GRGCYC 2 cut(s) 163, 1410
ErhI CCWWGG 1 cut(s) 783
FaeI CATG 8 cut(s) 401, 970, 1216, 1342, 1399, 1591, 1630, 1641
FaqI GGGAC 1 cut(s) 268
FatI CATG 8 cut(s) 397, 966, 1212, 1338, 1395, 1587, 1626, 1637
FauI CCCGC 3 cut(s) 127, 144, 661
FauNDI CATATG 1 cut(s) 555
Fnu4HI GCNGC 3 cut(s) 927, 1044, 1610
FokI GGATG 6 cut(s) 212, 676, 770, 983, 1305, 1690
FriOI GRGCYC 2 cut(s) 163, 1410
Fsp4HI GCNGC 3 cut(s) 927, 1044, 1610
FspBI CTAG 1 cut(s) 1110
GluI GCNGC 3 cut(s) 927, 1044, 1610
HaeIII GGCC 4 cut(s) 466, 672, 954, 1117
HapII CCGG 2 cut(s) 128, 299
HgaI GACGC 1 cut(s) 1700
Hin1I GRCGYC 1 cut(s) 1711
Hin1II CATG 8 cut(s) 401, 970, 1216, 1342, 1399, 1591, 1630, 1641
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HinfI GANTC 7 cut(s) 272, 512, 590, 745, 1016, 1301, 1513
HpaII CCGG 2 cut(s) 128, 299
HphI GGTGA 6 cut(s) 185, 719, 771, 847, 1276, 1642
Hpy166II GTNNAC 5 cut(s) 808, 820, 838, 1667, 1715
Hpy188I TCNGA 4 cut(s) 60, 143, 316, 1512
Hpy8I GTNNAC 5 cut(s) 808, 820, 838, 1667, 1715
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 5 cut(s) 57, 443, 995, 1127, 1536
HpyCH4III ACNGT 3 cut(s) 497, 1345, 1577
HpyCH4IV ACGT 4 cut(s) 227, 375, 682, 810
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 1043, 1405, 1717
HpyF3I CTNAG 5 cut(s) 57, 140, 915, 1235, 1333
HpySE526I ACGT 4 cut(s) 227, 375, 682, 810
Hsp92I GRCGYC 1 cut(s) 1711
Hsp92II CATG 8 cut(s) 401, 970, 1216, 1342, 1399, 1591, 1630, 1641
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 5 cut(s) 709, 715, 1188, 1549, 1600
LguI GCTCTTC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 913, 1621
LweI GCATC 3 cut(s) 961, 1327, 1466
MaeI CTAG 1 cut(s) 1110
MaeII ACGT 4 cut(s) 227, 375, 682, 810
MaeIII GTNAC 4 cut(s) 719, 853, 1345, 1630
MalI GATC 5 cut(s) 711, 717, 1190, 1551, 1602
MboI GATC 5 cut(s) 709, 715, 1188, 1549, 1600
MflI RGATCY 1 cut(s) 1188
MhlI GDGCHC 3 cut(s) 163, 1410, 1700
MlsI TGGCCA 1 cut(s) 954
MluCI AATT 9 cut(s) 36, 335, 387, 630, 663, 675, 888, 939, 1461
MluNI TGGCCA 1 cut(s) 954
MlyI GAGTC 2 cut(s) 521, 754
MmeI TCCRAC 1 cut(s) 339
Mox20I TGGCCA 1 cut(s) 954
MroI TCCGGA 1 cut(s) 298
MscI TGGCCA 1 cut(s) 954
MseI TTAA 2 cut(s) 887, 1026
MslI CAYNNNNRTG 2 cut(s) 702, 1586
Msp20I TGGCCA 1 cut(s) 954
MspI CCGG 2 cut(s) 128, 299
MspR9I CCNGG 1 cut(s) 578
Mva1269I GAATGC 3 cut(s) 92, 622, 1203
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 4 cut(s) 124, 1043, 1405, 1717
NdeI CATATG 1 cut(s) 555
NdeII GATC 5 cut(s) 709, 715, 1188, 1549, 1600
NlaIII CATG 8 cut(s) 401, 970, 1216, 1342, 1399, 1591, 1630, 1641
NlaIV GGNNCC 2 cut(s) 216, 1190
NmeAIII GCCGAG 1 cut(s) 1330
NmuCI GTSAC 2 cut(s) 853, 1630
NspV TTCGAA 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 292
PctI GAATGC 3 cut(s) 92, 622, 1203
PfeI GAWTC 5 cut(s) 272, 590, 1016, 1301, 1513
PflFI GACNNNGTC 1 cut(s) 1577
PkrI GCNGC 3 cut(s) 928, 1045, 1611
PleI GAGTC 2 cut(s) 520, 753
PmaCI CACGTG 1 cut(s) 683
PmlI CACGTG 1 cut(s) 683
PpsI GAGTC 2 cut(s) 520, 753
Ppu21I YACGTR 3 cut(s) 228, 376, 683
Psp1406I AACGTT 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 576
PspCI CACGTG 1 cut(s) 683
PspEI GGTNACC 1 cut(s) 853
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 2 cut(s) 216, 1190
PspPI GGNCC 2 cut(s) 215, 670
PstI CTGCAG 2 cut(s) 754, 1597
PsuI RGATCY 1 cut(s) 1188
PsyI GACNNNGTC 1 cut(s) 1577
RsaI GTAC 5 cut(s) 369, 789, 821, 1259, 1547
RsaNI GTAC 5 cut(s) 368, 788, 820, 1258, 1546
RseI CAYNNNNRTG 2 cut(s) 702, 1586
SapI GCTCTTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 887, 1026
SatI GCNGC 3 cut(s) 927, 1044, 1610
Sau3AI GATC 5 cut(s) 709, 715, 1188, 1549, 1600
Sau96I GGNCC 2 cut(s) 215, 670
SchI GAGTC 2 cut(s) 521, 754
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 3 cut(s) 163, 1410, 1700
SfaNI GCATC 3 cut(s) 961, 1327, 1466
SfcI CTRYAG 2 cut(s) 750, 1593
Sfr274I CTCGAG 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 597
SmiMI CAYNNNNRTG 2 cut(s) 702, 1586
SmlI CTYRAG 2 cut(s) 10, 597
SmoI CTYRAG 2 cut(s) 10, 597
Sse9I AATT 9 cut(s) 36, 335, 387, 630, 663, 675, 888, 939, 1461
SsiI CCGC 5 cut(s) 134, 151, 668, 999, 1044
SspI AATATT 1 cut(s) 1074
SspMI CTAG 1 cut(s) 1110
StyD4I CCNGG 1 cut(s) 576
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 3 cut(s) 497, 1345, 1577
TaiI ACGT 4 cut(s) 230, 378, 685, 813
TaqI TCGA 5 cut(s) 333, 408, 481, 598, 1304
TasI AATT 9 cut(s) 36, 335, 387, 630, 663, 675, 888, 939, 1461
TatI WGTACW 2 cut(s) 819, 1257
TauI GCSGC 1 cut(s) 1046
TfiI GAWTC 5 cut(s) 272, 590, 1016, 1301, 1513
Tru1I TTAA 2 cut(s) 887, 1026
Tru9I TTAA 2 cut(s) 887, 1026
TscAI CASTG 4 cut(s) 502, 759, 840, 1722
TseFI GTSAC 2 cut(s) 853, 1630
TseI GCWGC 2 cut(s) 926, 1609
Tsp45I GTSAC 2 cut(s) 853, 1630
TspDTI ATGAA 7 cut(s) 216, 429, 651, 1201, 1384, 1489, 1643
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 4 cut(s) 502, 759, 840, 1722
Tth111I GACNNNGTC 1 cut(s) 1577
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 2 cut(s) 36, 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XhoI CTCGAG 1 cut(s) 597
XspI CTAG 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.