AT2G20890

Thylakoid formation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011451
Physical Location & Seq
Forward (+)
8987584 .. 8989416
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20890.1

Sequence Viewer

Length: 903 bp
ATGGCTGCAACTGCAATCTCTTCTCTTTCCTTCCCAGCTTTGGGTCAATCGGACAAGATCTCCAATTTCGCATCTTCTCGTCCTCTCGCCTCCGCAATTCGCATCTGCACAAAGTTTTCTCGCCTTTCTTTGAATTCGCGTTCCACTTCGAAATCTCTTATTCACTGCATGTCCAATGTTACCGCCGATGTGCCTCCTGTATCAGAGACAAAGTCGAAATTCCTAAAAGCTTACAAGCGACCCATCCCGAGTATCTACAACACGGTTTTGCAGGAGCTCATTGTCCAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTATGATCCTGTTTTTGCCCTTGGATTTGTCACTGTATATGATCAGCTCATGGAAGGATATCCGAGTGATCAAGACCGAGATGCCATTTTTAAGGCTTACATTGAAGCCTTGAATGAGGATCCTAAGCAATACCGAATTGATGCTCAGAAGATGGAGGAATGGGCACGAAGTCAGACTTCTGCTTCACTAGTTGACTTTTCCTCTAAAGAAGGAGATATTGAAGCAGTTCTTAAGGACATTGCAGGAAGAGCTGGTAGTAAGGAGGGGTTTAGTTACAGCAGGTTCTTCGCTGTTGGGCTCTTTCGTTTGCTTGAGCTTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACAAGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTTTCAAAGCTTGTCCAAGCCAAGGAATTGCTTAAGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGAGAAAGAGCCCAATCTCAGAAGGCTAACGAAACAATCTCCAAGTGTCTGGGAGATACTCTATATAACCCATCTTTCTTGGTTGAACGGAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006605 GO:0006612 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009707 GO:0009743 GO:0009756 GO:0009889 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010119 GO:0010182 GO:0010207 GO:0010319 GO:0015031 GO:0015833 GO:0015979 GO:0015994 GO:0015996 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019439 GO:0019684 GO:0019866 GO:0019867 GO:0022607 GO:0023052 GO:0031090 GO:0031323 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0034622 GO:0034641 GO:0042170 GO:0042221 GO:0042440 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045038 GO:0045184 GO:0046149 GO:0046483 GO:0046700 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051187 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0065003 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071322 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098588 GO:0098805 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902456 GO:1902458 GO:1903426 GO:2000070 GO:2000377
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ThylakoidFormat

Protein Analysis

300

Amino Acids

33.8

Weight (kDa)

9.2

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThylakoidFormat PF11264 67 - 271 7.4e-75 Thylakoid formation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 591, 744
AccII CGCG 1 cut(s) 139
AciI CCGC 2 cut(s) 93, 183
AclWI GGATC 5 cut(s) 320, 434, 447, 647, 717
AcsI RAATTY 2 cut(s) 133, 218
AfiI CCNNNNNNNGG 3 cut(s) 40, 41, 760
AflII CTTAAG 2 cut(s) 551, 770
AgsI TTSAA 6 cut(s) 133, 425, 433, 542, 744, 890
AhlI ACTAGT 1 cut(s) 508
AjnI CCWGG 1 cut(s) 717
AluBI AGCT 8 cut(s) 38, 230, 277, 367, 572, 637, 673, 748
AluI AGCT 8 cut(s) 38, 230, 277, 367, 572, 637, 673, 748
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 5 cut(s) 320, 434, 447, 647, 717
Ama87I CYCGRG 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 5, 289
ApoI RAATTY 2 cut(s) 133, 218
Asp700I GAANNNNTTC 1 cut(s) 546
AspS9I GGNCC 1 cut(s) 715
AsuII TTCGAA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 715
BaeGI GKGCMC 1 cut(s) 487
BamHI GGATCC 1 cut(s) 439
BanII GRGCYC 3 cut(s) 279, 621, 817
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 301
BccI CCATC 3 cut(s) 251, 466, 883
BcgI CGANNNNNNTGC 2 cut(s) 589, 623
BciT130I CCWGG 1 cut(s) 719
BclI TGATCA 2 cut(s) 361, 388
BcoDI GTCTC 1 cut(s) 200
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 1 cut(s) 509
BfrI CTTAAG 2 cut(s) 551, 770
BfuAI ACCTGC 2 cut(s) 591, 744
BglII AGATCT 1 cut(s) 57
BisI GCNGC 2 cut(s) 6, 290
BlsI GCNGC 2 cut(s) 7, 291
Bme1390I CCNGG 1 cut(s) 719
Bme18I GGWCC 1 cut(s) 715
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 2 cut(s) 441, 716
BmrFI CCNGG 1 cut(s) 719
BmsI GCATC 5 cut(s) 80, 111, 391, 451, 689
BpiI GAAGAC 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 726
BsaJI CCNNGG 2 cut(s) 340, 759
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 41, 760
Bse3DI GCAATG 1 cut(s) 558
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 1 cut(s) 719
BseDI CCNNGG 2 cut(s) 340, 759
BseGI GGATG 3 cut(s) 243, 680, 727
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 3 cut(s) 40, 41, 760
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 2 cut(s) 479, 836
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 3 cut(s) 40, 41, 760
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 247
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 4 cut(s) 279, 487, 621, 817
Bsp143I GATC 7 cut(s) 57, 325, 361, 388, 439, 652, 709
BspACI CCGC 2 cut(s) 93, 183
BspCNI CTCAG 2 cut(s) 478, 835
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 441, 716
BspMI ACCTGC 2 cut(s) 591, 744
BspPI GGATC 5 cut(s) 320, 434, 447, 647, 717
BspQI GCTCTTC 1 cut(s) 562
BspT104I TTCGAA 1 cut(s) 149
BspTI CTTAAG 2 cut(s) 551, 770
BsrDI GCAATG 1 cut(s) 558
BssECI CCNNGG 2 cut(s) 340, 759
BssMI GATC 7 cut(s) 57, 325, 361, 388, 439, 652, 709
BssT1I CCWWGG 2 cut(s) 340, 759
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 3 cut(s) 265, 355, 661
Bst6I CTCTTC 2 cut(s) 25, 562
BstAFI CTTAAG 2 cut(s) 551, 770
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 4 cut(s) 444, 465, 822, 900
BstF5I GGATG 3 cut(s) 243, 680, 727
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 7 cut(s) 60, 328, 364, 391, 442, 655, 712
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 7 cut(s) 57, 325, 361, 388, 439, 652, 709
BstMWI GCNNNNNNNGC 3 cut(s) 11, 569, 745
BstNI CCWGG 1 cut(s) 719
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 717
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 2 cut(s) 57, 439
BstXI CCANNNNNNTGG 1 cut(s) 853
BstYI RGATCY 2 cut(s) 57, 439
BtsCI GGATG 3 cut(s) 243, 680, 727
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 163, 351
BveI ACCTGC 2 cut(s) 591, 744
Cac8I GCNNGC 1 cut(s) 639
Cfr13I GGNCC 1 cut(s) 715
CviAII CATG 2 cut(s) 169, 370
DdeI CTNAG 4 cut(s) 444, 465, 822, 900
DpnI GATC 7 cut(s) 59, 327, 363, 390, 441, 654, 711
DpnII GATC 7 cut(s) 57, 325, 361, 388, 439, 652, 709
Eam1104I CTCTTC 2 cut(s) 25, 562
EarI CTCTTC 2 cut(s) 25, 562
Ecl136II GAGCTC 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 340, 759
Eco24I GRGCYC 3 cut(s) 279, 621, 817
Eco32I GATATC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 717
EcoRV GATATC 1 cut(s) 380
EcoT14I CCWWGG 2 cut(s) 340, 759
EcoT38I GRGCYC 3 cut(s) 279, 621, 817
ErhI CCWWGG 2 cut(s) 340, 759
FaeI CATG 2 cut(s) 172, 373
FaiI YATR 9 cut(s) 170, 306, 324, 358, 360, 371, 780, 868, 870
FalI AAGNNNNNCTT 4 cut(s) 481, 513, 534, 566
FaqI GGGAC 1 cut(s) 728
FatI CATG 2 cut(s) 168, 369
FbaI TGATCA 2 cut(s) 361, 388
Fnu4HI GCNGC 2 cut(s) 6, 290
FokI GGATG 3 cut(s) 230, 667, 734
FriOI GRGCYC 3 cut(s) 279, 621, 817
Fsp4HI GCNGC 2 cut(s) 6, 290
FspBI CTAG 1 cut(s) 509
GluI GCNGC 2 cut(s) 6, 290
GsaI CCCAGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 172, 373
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 3 cut(s) 228, 671, 746
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 6 cut(s) 52, 205, 384, 468, 495, 825
Hpy188III TCNNGA 4 cut(s) 247, 392, 713, 784
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 4 cut(s) 40, 368, 524, 820
HpyCH4III ACNGT 3 cut(s) 265, 355, 661
HpyCH4V TGCA 8 cut(s) 8, 14, 108, 168, 271, 563, 641, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 569, 745
HpyF3I CTNAG 4 cut(s) 444, 465, 822, 900
Hsp92II CATG 2 cut(s) 172, 373
Ksp22I TGATCA 2 cut(s) 361, 388
Kzo9I GATC 7 cut(s) 57, 325, 361, 388, 439, 652, 709
LguI GCTCTTC 1 cut(s) 562
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 5 cut(s) 80, 111, 391, 451, 689
MaeI CTAG 1 cut(s) 509
MaeIII GTNAC 4 cut(s) 178, 349, 593, 731
MalI GATC 7 cut(s) 59, 327, 363, 390, 441, 654, 711
MboI GATC 7 cut(s) 57, 325, 361, 388, 439, 652, 709
MboII GAAGA 8 cut(s) 12, 66, 322, 481, 579, 598, 805, 808
MflI RGATCY 2 cut(s) 57, 439
MhlI GDGCHC 4 cut(s) 279, 487, 621, 817
MluCI AATT 6 cut(s) 64, 96, 133, 218, 456, 764
MmeI TCCRAC 1 cut(s) 680
MnlI CCTC 9 cut(s) 93, 100, 204, 294, 430, 469, 532, 577, 780
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 3 cut(s) 411, 552, 771
MspCI CTTAAG 2 cut(s) 551, 770
MspR9I CCNGG 1 cut(s) 719
MvaI CCWGG 1 cut(s) 719
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 11, 569, 745
NdeII GATC 7 cut(s) 57, 325, 361, 388, 439, 652, 709
NlaIII CATG 2 cut(s) 172, 373
NlaIV GGNNCC 2 cut(s) 441, 716
NmuCI GTSAC 1 cut(s) 349
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 546
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 7, 291
PpuMI RGGWCCY 1 cut(s) 715
Psp124BI GAGCTC 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 717
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 2 cut(s) 441, 716
PspPI GGNCC 1 cut(s) 715
PspPPI RGGWCCY 1 cut(s) 715
PsuI RGATCY 2 cut(s) 57, 439
PsyI GACNNNGTC 1 cut(s) 211
SacI GAGCTC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 562
SaqAI TTAA 3 cut(s) 411, 552, 771
SatI GCNGC 2 cut(s) 6, 290
Sau3AI GATC 7 cut(s) 57, 325, 361, 388, 439, 652, 709
Sau96I GGNCC 1 cut(s) 715
ScrFI CCNGG 1 cut(s) 719
SduI GDGCHC 4 cut(s) 279, 487, 621, 817
SfaNI GCATC 5 cut(s) 80, 111, 391, 451, 689
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 1 cut(s) 715
SmlI CTYRAG 3 cut(s) 551, 632, 770
SmoI CTYRAG 3 cut(s) 551, 632, 770
SpeI ACTAGT 1 cut(s) 508
Sse9I AATT 6 cut(s) 64, 96, 133, 218, 456, 764
SsiI CCGC 2 cut(s) 93, 183
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 717
StyI CCWWGG 2 cut(s) 340, 759
TaaI ACNGT 3 cut(s) 265, 355, 661
TaqI TCGA 3 cut(s) 149, 215, 783
TaqII GACCGA 1 cut(s) 411
TasI AATT 6 cut(s) 64, 96, 133, 218, 456, 764
Tru1I TTAA 3 cut(s) 411, 552, 771
Tru9I TTAA 3 cut(s) 411, 552, 771
TscAI CASTG 2 cut(s) 170, 358
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 5, 289
Tsp45I GTSAC 1 cut(s) 349
TspRI CASTG 2 cut(s) 170, 358
Tth111I GACNNNGTC 1 cut(s) 211
Vha464I CTTAAG 2 cut(s) 551, 770
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 2 cut(s) 133, 218
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.