pycom09g02150

Protein THYLAKOID FORMATION1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011451
Physical Location & Seq
Forward (+)
1625270 .. 1627814
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02150.1

Sequence Viewer

Length: 909 bp
ATGGCGGCCGTTGCTTCTCTGTCTTTTTCGGCGCTCAGTCAATGCTCTGATAGAAAATCGGTCGTCTCGCCCGCTCGCAATTTGGGTTCCAACGCCGAAGGCATTCGATTCCGTACGAGCATTTCCAGCCATTACGGTGGAATTCGAGCTTCGAGTTGGAGCTCTCGCATAGTGGTTCATTGCATGGCAGGGTCGTCAGATACTCCGACTGTGGCGGATACAAAGTTGAATTTTTTGAAGGCGTATAAGCGACCAATCCCTAGCGTTTACAACAGTGTGCTACAGGAGCTGATTGTCCAGCAACATTTGATGAAGTACAAGAGGACATACCGGTATGATCCTGTGTTCGCTCTTGGTTTTGTCACTGTATACGATCAACTCATGGATGGATATCCCAGCGATGAGGATCGAGAGGCAATCTTCCAAGCGTACATTAAAGCTTTAAATGAGGACCCAGAGCAATACAGTTTCCATGCTAAGCACTACAGAACTGATGCACAAAAGTTGGAAGAGTGGGCTCGGGCACAAACTTCCAGTTCATTAGTGGAGTTTCCATCCAGAGAAGGAGAAGTTGAGGCAGCACTGAAGGACATTGCAGAAAGGGCAGCAGGCAAAGAAAGTTTTAGCTACAGTCGTTTCTTTGCTATTGGGCTTTTTCGTCTTCTTGAGGTGGCAAAAGCAACTGAACCAACAGTATTAGAAAAGTTATGTGCAGCCTTAAACATTGACAAAAGAAGTGTGGACCGGGACCTTGATGTGTACCGCAATCTGCTTTCCAAGCTGGTTCAGGCCAAAGAACTGCTAAGGGAATATGTGGCCAGGGAGAAGAAGAAAAGAGAAGAAAGGGTGGAAACACAGAAGGCCAGTGAAACGGTTACGAAATGTTTGGGGGATTATGTTTGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006605 GO:0006612 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009707 GO:0009743 GO:0009756 GO:0009889 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010119 GO:0010182 GO:0010207 GO:0010319 GO:0015031 GO:0015833 GO:0015979 GO:0015994 GO:0015996 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019439 GO:0019684 GO:0019866 GO:0019867 GO:0022607 GO:0023052 GO:0031090 GO:0031323 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0034622 GO:0034641 GO:0042170 GO:0042221 GO:0042440 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045038 GO:0045184 GO:0046149 GO:0046483 GO:0046700 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051187 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0065003 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071322 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098588 GO:0098805 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902456 GO:1902458 GO:1903426 GO:2000070 GO:2000377
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ThylakoidFormat

Protein Analysis

303

Amino Acids

34.19

Weight (kDa)

8.64

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThylakoidFormat PF11264 70 - 282 9.2e-73 Thylakoid formation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 369
AciI CCGC 4 cut(s) 5, 72, 215, 763
AclWI GGATC 2 cut(s) 332, 414
AcoI YGGCCR 2 cut(s) 6, 816
AcsI RAATTY 2 cut(s) 141, 229
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 4 cut(s) 115, 317, 431, 761
AgeI ACCGGT 1 cut(s) 330
AgsI TTSAA 2 cut(s) 229, 238
AjnI CCWGG 1 cut(s) 818
AluBI AGCT 6 cut(s) 149, 162, 289, 440, 627, 781
AluI AGCT 6 cut(s) 149, 162, 289, 440, 627, 781
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 2 cut(s) 332, 414
AlwNI CAGNNNCTG 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 4 cut(s) 6, 789, 816, 861
ApeKI GCWGC 3 cut(s) 578, 605, 713
ApoI RAATTY 2 cut(s) 141, 229
AsiGI ACCGGT 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 3 cut(s) 451, 742, 748
AsuC2I CCSGG 1 cut(s) 746
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 3 cut(s) 451, 742, 748
BaeGI GKGCMC 1 cut(s) 526
BalI TGGCCA 1 cut(s) 818
BanII GRGCYC 2 cut(s) 164, 520
BbsI GAAGAC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 590, 617, 725
BccI CCATC 2 cut(s) 380, 562
BciT130I CCWGG 1 cut(s) 820
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 3 cut(s) 281, 484, 628
BfoI RGCGCY 1 cut(s) 35
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 4 cut(s) 6, 579, 606, 714
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 4 cut(s) 7, 580, 607, 715
Bme1390I CCNGG 2 cut(s) 746, 820
Bme18I GGWCC 3 cut(s) 451, 742, 748
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 451, 742, 748
BmiI GGNNCC 3 cut(s) 88, 453, 749
BmrFI CCNGG 2 cut(s) 746, 820
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 653
Bpu10I CCTNAGC 1 cut(s) 803
Bpu1102I GCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 746
BsaBI GATNNNNATC 2 cut(s) 390, 405
BsaJI CCNNGG 1 cut(s) 819
BsaWI WCCGGW 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 3 cut(s) 534, 864, 904
Bse3DI GCAATG 2 cut(s) 178, 591
Bse8I GATNNNNATC 2 cut(s) 390, 405
BseBI CCWGG 1 cut(s) 820
BseDI CCNNGG 1 cut(s) 819
BseGI GGATG 2 cut(s) 391, 554
BseJI GATNNNNATC 2 cut(s) 390, 405
BseMI GCAATG 2 cut(s) 178, 591
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 3 cut(s) 534, 864, 904
BseSI GKGCMC 1 cut(s) 526
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 3 cut(s) 590, 617, 725
BseYI CCCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 732
Bsh1285I CGRYCG 2 cut(s) 9, 63
BshFI GGCC 4 cut(s) 8, 791, 818, 863
BshTI ACCGGT 1 cut(s) 330
BsiEI CGRYCG 2 cut(s) 9, 63
BsiHKAI GWGCWC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 2 cut(s) 331, 745
BsiWI CGTACG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 761
BsmAI GTCTC 1 cut(s) 70
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 761
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 4 cut(s) 8, 791, 818, 863
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 3 cut(s) 164, 520, 526
Bsp143I GATC 3 cut(s) 337, 373, 406
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 4 cut(s) 5, 72, 215, 763
BspANI GGCC 4 cut(s) 8, 791, 818, 863
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 3 cut(s) 88, 453, 749
BspPI GGATC 2 cut(s) 332, 414
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 178, 591
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 3 cut(s) 534, 864, 904
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 819
BssMI GATC 3 cut(s) 337, 373, 406
BssNAI GTATAC 1 cut(s) 370
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 8 cut(s) 137, 211, 275, 367, 467, 632, 694, 874
Bst6I CTCTTC 1 cut(s) 504
BstC8I GCNNGC 3 cut(s) 72, 76, 610
BstDEI CTNAG 3 cut(s) 35, 477, 803
BstF5I GGATG 2 cut(s) 391, 554
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 340, 376, 409
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 337, 373, 406
BstMCI CGRYCG 2 cut(s) 9, 63
BstMWI GCNNNNNNNGC 5 cut(s) 11, 126, 286, 602, 778
BstNI CCWGG 1 cut(s) 820
BstSCI CCNGG 2 cut(s) 744, 818
BstSFI CTRYAG 3 cut(s) 281, 484, 628
BstSLI GKGCMC 1 cut(s) 526
BstV1I GCAGC 3 cut(s) 590, 617, 725
BstV2I GAAGAC 1 cut(s) 653
BstXI CCANNNNNNTGG 1 cut(s) 137
BstZ17I GTATAC 1 cut(s) 370
BstZI CGGCCG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 4 cut(s) 8, 791, 818, 863
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 391, 554
BtsIMutI CAGTG 4 cut(s) 280, 363, 581, 871
Cac8I GCNNGC 3 cut(s) 72, 76, 610
CaiI CAGNNNCTG 1 cut(s) 289
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 3 cut(s) 451, 742, 748
Csp6I GTAC 4 cut(s) 114, 316, 430, 760
CspAI ACCGGT 1 cut(s) 330
CviAII CATG 3 cut(s) 184, 382, 473
CviQI GTAC 4 cut(s) 114, 316, 430, 760
DdeI CTNAG 3 cut(s) 35, 477, 803
DpnI GATC 3 cut(s) 339, 375, 408
DpnII GATC 3 cut(s) 337, 373, 406
DraI TTTAAA 1 cut(s) 444
EaeI YGGCCR 2 cut(s) 6, 816
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 162
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 164, 520
Eco32I GATATC 1 cut(s) 392
Eco47I GGWCC 3 cut(s) 451, 742, 748
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 1 cut(s) 519
EcoICRI GAGCTC 1 cut(s) 162
EcoO109I RGGNCCY 2 cut(s) 451, 748
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 818
EcoRV GATATC 1 cut(s) 392
EcoT38I GRGCYC 2 cut(s) 164, 520
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 3 cut(s) 187, 385, 476
FaqI GGGAC 1 cut(s) 761
FatI CATG 3 cut(s) 183, 381, 472
FauI CCCGC 1 cut(s) 79
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 6, 579, 606, 714
FokI GGATG 2 cut(s) 398, 541
FriOI GRGCYC 2 cut(s) 164, 520
Fsp4HI GCNGC 4 cut(s) 6, 579, 606, 714
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 33
GluI GCNGC 4 cut(s) 6, 579, 606, 714
GsaI CCCAGC 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 4 cut(s) 8, 791, 818, 863
HapII CCGG 2 cut(s) 331, 745
HhaI GCGC 1 cut(s) 34
Hin1II CATG 3 cut(s) 187, 385, 476
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 1 cut(s) 108
HpaII CCGG 2 cut(s) 331, 745
Hpy166II GTNNAC 4 cut(s) 268, 370, 742, 760
Hpy188I TCNGA 3 cut(s) 49, 199, 207
Hpy188III TCNNGA 3 cut(s) 410, 558, 665
Hpy8I GTNNAC 4 cut(s) 268, 370, 742, 760
HpyAV CCTTC 5 cut(s) 92, 232, 557, 580, 853
HpyCH4III ACNGT 8 cut(s) 137, 211, 275, 367, 467, 632, 694, 874
HpyCH4V TGCA 4 cut(s) 183, 497, 596, 713
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 126, 286, 602, 778
HpyF3I CTNAG 3 cut(s) 35, 477, 803
Hsp92II CATG 3 cut(s) 187, 385, 476
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 3 cut(s) 337, 373, 406
LmnI GCTCC 2 cut(s) 159, 286
Lsp1109I GCAGC 3 cut(s) 590, 617, 725
LweI GCATC 1 cut(s) 484
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 361, 874
MalI GATC 3 cut(s) 339, 375, 408
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 337, 373, 406
MboII GAAGA 6 cut(s) 412, 521, 653, 838, 841, 851
MhlI GDGCHC 3 cut(s) 164, 520, 526
MlsI TGGCCA 1 cut(s) 818
MluCI AATT 3 cut(s) 79, 141, 229
MluNI TGGCCA 1 cut(s) 818
MmeI TCCRAC 4 cut(s) 114, 137, 230, 486
MnlI CCTC 6 cut(s) 315, 397, 406, 442, 568, 661
Mox20I TGGCCA 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 102
MscI TGGCCA 1 cut(s) 818
MseI TTAA 3 cut(s) 435, 443, 719
MslI CAYNNNNRTG 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 818
MspI CCGG 2 cut(s) 331, 745
MspR9I CCNGG 2 cut(s) 746, 820
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 820
MwoI GCNNNNNNNGC 5 cut(s) 11, 126, 286, 602, 778
NciI CCSGG 1 cut(s) 746
NdeII GATC 3 cut(s) 337, 373, 406
NlaIII CATG 3 cut(s) 187, 385, 476
NlaIV GGNNCC 3 cut(s) 88, 453, 749
NmuCI GTSAC 1 cut(s) 361
PctI GAATGC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 108
Pfl23II CGTACG 1 cut(s) 113
PinAI ACCGGT 1 cut(s) 330
PkrI GCNGC 4 cut(s) 7, 580, 607, 715
PpuMI RGGWCCY 2 cut(s) 451, 748
Psp124BI GAGCTC 1 cut(s) 164
Psp5II RGGWCCY 2 cut(s) 451, 748
Psp6I CCWGG 1 cut(s) 818
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 1 cut(s) 818
PspLI CGTACG 1 cut(s) 113
PspN4I GGNNCC 3 cut(s) 88, 453, 749
PspPI GGNCC 3 cut(s) 451, 742, 748
PspPPI RGGWCCY 2 cut(s) 451, 748
PstNI CAGNNNCTG 1 cut(s) 289
RsaI GTAC 4 cut(s) 115, 317, 431, 761
RsaNI GTAC 4 cut(s) 114, 316, 430, 760
RseI CAYNNNNRTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 435, 443, 719
SatI GCNGC 4 cut(s) 6, 579, 606, 714
Sau3AI GATC 3 cut(s) 337, 373, 406
Sau96I GGNCC 3 cut(s) 451, 742, 748
ScrFI CCNGG 2 cut(s) 746, 820
SduI GDGCHC 3 cut(s) 164, 520, 526
SetI ASST 8 cut(s) 151, 164, 291, 442, 629, 672, 753, 783
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 3 cut(s) 281, 484, 628
SinI GGWCC 3 cut(s) 451, 742, 748
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 3 cut(s) 79, 141, 229
SsiI CCGC 4 cut(s) 5, 72, 215, 763
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 744, 818
TaaI ACNGT 8 cut(s) 137, 211, 275, 367, 467, 632, 694, 874
TaqI TCGA 4 cut(s) 106, 145, 152, 409
TaqII GACCGA 1 cut(s) 49
TasI AATT 3 cut(s) 79, 141, 229
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 3 cut(s) 435, 443, 719
Tru9I TTAA 3 cut(s) 435, 443, 719
TscAI CASTG 4 cut(s) 280, 370, 588, 871
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 3 cut(s) 578, 605, 713
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 3 cut(s) 167, 326, 528
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 4 cut(s) 280, 370, 588, 871
VpaK11BI GGWCC 3 cut(s) 451, 742, 748
XapI RAATTY 2 cut(s) 141, 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.