Rroxscaffold_2G00088860

Protein THYLAKOID FORMATION1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011451
Physical Location & Seq
Forward (+)
10738168 .. 10741245
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088860.1

Sequence Viewer

Length: 882 bp
ATGGCCGCCGTCAGTTCTCTCTCTTTCTCTGCACTAACTCAGTCGTCGTCTTTCCCGTCGGCCAGAAATTTGGCCTCGAATTCCGATGGTCTGCGATTCCGTACCAGCTTCTCGCTGCATTATGGTGGCTTCCGGTCATCCAATTCCGGCCCTCGTTTGGTTGTTCATTGCATGTCTTCGACTTCAGATTTGGCAACTGTAGCTGATACGAAGTTGAATTTTCTAAAGGCGTATAAGCGGCCGATCCCGAGTGTGTACAACACTGTGTTGCAGGAGCTGATTGTGCAGCAACATTTGATGAGGTACAAGAGGACCTACCGTTACGACCCTGTGTTTGCTCTTGGCTTTGTTACTGTATATGATCAGCTCATGGATGGGTACCCTAGCGATGAGGATAGAGATGCAATCTTCAGAGCTTACATAAATGCACTAAAGGAGGACCCGGAGCAATACAGAGCTGATGCAAAAAAGTTGGAAGAGTGGGCTCGGGCTCAGACTTCCAGTTCGTTGATTGAATTTCCGTCCAAAGAAGGAGAAGTTGAGGGGATATTGAAGGACATTGCAGAAAGAGCAGGTGGCAAAGGAAGTTTTAGCTATAGTCGCTTCTTTGCGGTTGGGCTCTTTCGTCTTCTTGAGTTGGCAAATGCAACTGAACCAACAGTATTGGAAAAGTTGTGTGCAGCCTTAAACATTGAGAAAAGAAGTGTGGACCGGGACCTTGATGTATACCGCAATCTACTTTCTAAGCTGGTTCAGGCAAAAGAACTGTTAAAGGAATATGTGGCCAGGGAGAAGAAGAAAAGGGAAGAAAGGACAGGAGCACAGAAGGCTAATGAAGCCATTGCAACGTGTTTGAGGGAGCCCCAATATATGGGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006605 GO:0006612 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009707 GO:0009743 GO:0009756 GO:0009889 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010119 GO:0010182 GO:0010207 GO:0010319 GO:0015031 GO:0015833 GO:0015979 GO:0015994 GO:0015996 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019439 GO:0019684 GO:0019866 GO:0019867 GO:0022607 GO:0023052 GO:0031090 GO:0031323 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0034622 GO:0034641 GO:0042170 GO:0042221 GO:0042440 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045038 GO:0045184 GO:0046149 GO:0046483 GO:0046700 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051187 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0065003 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071322 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098588 GO:0098805 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902456 GO:1902458 GO:1903426 GO:2000070 GO:2000377
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ThylakoidFormat

Protein Analysis

293

Amino Acids

33.05

Weight (kDa)

8.93

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThylakoidFormat PF11264 66 - 271 1.3e-76 Thylakoid formation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 563
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 871
AccI GTMKAC 1 cut(s) 726
AciI CCGC 4 cut(s) 6, 238, 611, 730
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 4 cut(s) 3, 60, 239, 783
AcsI RAATTY 4 cut(s) 67, 79, 217, 515
AcuI CTGAAG 2 cut(s) 168, 394
AfaI GTAC 4 cut(s) 103, 257, 305, 380
AfiI CCNNNNNNNGG 2 cut(s) 157, 871
AflIII ACRYGT 1 cut(s) 848
AgsI TTSAA 3 cut(s) 217, 515, 553
AjnI CCWGG 1 cut(s) 785
AluBI AGCT 8 cut(s) 108, 203, 277, 367, 416, 458, 594, 748
AluI AGCT 8 cut(s) 108, 203, 277, 367, 416, 458, 594, 748
Alw21I GWGCWC 1 cut(s) 823
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 277
Ama87I CYCGRG 2 cut(s) 247, 486
AoxI GGCC 7 cut(s) 3, 60, 72, 148, 239, 783, 874
ApeKI GCWGC 3 cut(s) 115, 286, 680
ApoI RAATTY 4 cut(s) 67, 79, 217, 515
ArsI GACNNNNNNTTYG 6 cut(s) 172, 204, 317, 349, 487, 519
Asp718I GGTACC 1 cut(s) 378
AspS9I GGNCC 6 cut(s) 149, 312, 439, 709, 715, 874
AsuC2I CCSGG 2 cut(s) 443, 713
AvaI CYCGRG 2 cut(s) 247, 486
AvaII GGWCC 4 cut(s) 312, 439, 709, 715
BalI TGGCCA 1 cut(s) 785
BanI GGYRCC 1 cut(s) 378
BanII GRGCYC 4 cut(s) 487, 493, 621, 864
BbsI GAAGAC 2 cut(s) 168, 620
Bbv12I GWGCWC 1 cut(s) 823
BbvI GCAGC 3 cut(s) 102, 298, 692
BccI CCATC 2 cut(s) 80, 368
BciT130I CCWGG 1 cut(s) 787
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 2 cut(s) 443, 713
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 2 cut(s) 198, 595
BfuAI ACCTGC 1 cut(s) 563
BisI GCNGC 5 cut(s) 6, 116, 239, 287, 681
BlsI GCNGC 5 cut(s) 7, 117, 240, 288, 682
Bme1390I CCNGG 3 cut(s) 443, 713, 787
Bme18I GGWCC 4 cut(s) 312, 439, 709, 715
BmeT110I CYCGRG 2 cut(s) 247, 486
BmgT120I GGNCC 6 cut(s) 149, 312, 439, 709, 715, 874
BmiI GGNNCC 4 cut(s) 380, 441, 716, 861
BmrFI CCNGG 3 cut(s) 443, 713, 787
BmsI GCATC 2 cut(s) 391, 451
BpiI GAAGAC 2 cut(s) 168, 620
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 2 cut(s) 443, 713
BsaJI CCNNGG 1 cut(s) 786
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 871
Bse1I ACTGG 1 cut(s) 501
Bse3DI GCAATG 3 cut(s) 166, 558, 840
BseBI CCWGG 1 cut(s) 787
BseDI CCNNGG 1 cut(s) 786
BseGI GGATG 2 cut(s) 137, 379
BseLI CCNNNNNNNGG 2 cut(s) 157, 871
BseMI GCAATG 3 cut(s) 166, 558, 840
BseMII CTCAG 2 cut(s) 53, 506
BseNI ACTGG 1 cut(s) 501
BseX3I CGGCCG 1 cut(s) 239
BseXI GCAGC 3 cut(s) 102, 298, 692
BsgI GTGCAG 3 cut(s) 15, 305, 699
Bsh1285I CGRYCG 1 cut(s) 242
BshFI GGCC 7 cut(s) 5, 62, 74, 150, 241, 785, 876
BshNI GGYRCC 1 cut(s) 378
BsiEI CGRYCG 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 823
BsiHKCI CYCGRG 2 cut(s) 247, 486
BsiSI CCGG 4 cut(s) 133, 147, 443, 712
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 2 cut(s) 157, 871
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 7 cut(s) 5, 62, 74, 150, 241, 785, 876
BsoBI CYCGRG 2 cut(s) 247, 486
Bsp1286I GDGCHC 5 cut(s) 487, 493, 621, 823, 864
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 2 cut(s) 243, 361
BspACI CCGC 4 cut(s) 6, 238, 611, 730
BspANI GGCC 7 cut(s) 5, 62, 74, 150, 241, 785, 876
BspCNI CTCAG 2 cut(s) 52, 505
BspLI GGNNCC 4 cut(s) 380, 441, 716, 861
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 378
BsrDI GCAATG 3 cut(s) 166, 558, 840
BsrGI TGTACA 1 cut(s) 255
BsrI ACTGG 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 786
BssMI GATC 2 cut(s) 243, 361
BssNAI GTATAC 1 cut(s) 727
Bst1107I GTATAC 1 cut(s) 727
Bst2UI CCWGG 1 cut(s) 787
Bst4CI ACNGT 6 cut(s) 199, 265, 320, 355, 661, 768
Bst6I CTCTTC 1 cut(s) 471
BstAUI TGTACA 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 39, 492, 744
BstF5I GGATG 2 cut(s) 137, 379
BstKTI GATC 2 cut(s) 246, 364
BstMBI GATC 2 cut(s) 243, 361
BstMCI CGRYCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 6 cut(s) 200, 283, 569, 600, 827, 836
BstNI CCWGG 1 cut(s) 787
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 3 cut(s) 441, 711, 785
BstSFI CTRYAG 2 cut(s) 198, 595
BstV1I GCAGC 3 cut(s) 102, 298, 692
BstV2I GAAGAC 2 cut(s) 168, 620
BstXI CCANNNNNNTGG 1 cut(s) 70
BstZ17I GTATAC 1 cut(s) 727
BstZI CGGCCG 1 cut(s) 239
BsuRI GGCC 7 cut(s) 5, 62, 74, 150, 241, 785, 876
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 137, 379
BtsIMutI CAGTG 1 cut(s) 261
BveI ACCTGC 1 cut(s) 563
CaiI CAGNNNCTG 1 cut(s) 277
Cfr13I GGNCC 6 cut(s) 149, 312, 439, 709, 715, 874
Csp6I GTAC 4 cut(s) 102, 256, 304, 379
CviAII CATG 2 cut(s) 172, 370
CviQI GTAC 4 cut(s) 102, 256, 304, 379
DdeI CTNAG 3 cut(s) 39, 492, 744
DpnI GATC 2 cut(s) 245, 363
DpnII GATC 2 cut(s) 243, 361
EaeI YGGCCR 4 cut(s) 3, 60, 239, 783
EagI CGGCCG 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EclXI CGGCCG 1 cut(s) 239
Eco24I GRGCYC 4 cut(s) 487, 493, 621, 864
Eco47I GGWCC 4 cut(s) 312, 439, 709, 715
Eco52I CGGCCG 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 168, 394
Eco88I CYCGRG 2 cut(s) 247, 486
EcoO109I RGGNCCY 3 cut(s) 312, 439, 715
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 785
EcoT38I GRGCYC 4 cut(s) 487, 493, 621, 864
FaeI CATG 2 cut(s) 175, 373
FaqI GGGAC 1 cut(s) 728
FatI CATG 2 cut(s) 171, 369
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 5 cut(s) 6, 116, 239, 287, 681
FokI GGATG 2 cut(s) 124, 386
FriOI GRGCYC 4 cut(s) 487, 493, 621, 864
Fsp4HI GCNGC 5 cut(s) 6, 116, 239, 287, 681
FspBI CTAG 1 cut(s) 384
GluI GCNGC 5 cut(s) 6, 116, 239, 287, 681
HaeIII GGCC 7 cut(s) 5, 62, 74, 150, 241, 785, 876
HapII CCGG 4 cut(s) 133, 147, 443, 712
Hin1II CATG 2 cut(s) 175, 373
HinfI GANTC 1 cut(s) 96
HpaII CCGG 4 cut(s) 133, 147, 443, 712
Hpy166II GTNNAC 3 cut(s) 256, 709, 727
Hpy188I TCNGA 4 cut(s) 85, 187, 413, 495
Hpy188III TCNNGA 2 cut(s) 247, 632
Hpy8I GTNNAC 3 cut(s) 256, 709, 727
Hpy99I CGWCG 2 cut(s) 49, 61
HpyAV CCTTC 3 cut(s) 524, 547, 820
HpyCH4III ACNGT 6 cut(s) 199, 265, 320, 355, 661, 768
HpyCH4IV ACGT 1 cut(s) 848
HpyF10VI GCNNNNNNNGC 6 cut(s) 200, 283, 569, 600, 827, 836
HpyF3I CTNAG 3 cut(s) 39, 492, 744
HpySE526I ACGT 1 cut(s) 848
Hsp92II CATG 2 cut(s) 175, 373
KpnI GGTACC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 2 cut(s) 243, 361
LmnI GCTCC 4 cut(s) 274, 445, 818, 859
Lsp1109I GCAGC 3 cut(s) 102, 298, 692
LweI GCATC 2 cut(s) 391, 451
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 2 cut(s) 320, 349
MalI GATC 2 cut(s) 245, 363
MboI GATC 2 cut(s) 243, 361
MboII GAAGA 7 cut(s) 168, 400, 488, 620, 805, 808, 818
MhlI GDGCHC 5 cut(s) 487, 493, 621, 823, 864
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 5 cut(s) 67, 79, 142, 217, 515
MluNI TGGCCA 1 cut(s) 785
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 8 cut(s) 85, 162, 294, 303, 385, 430, 535, 849
Mox20I TGGCCA 1 cut(s) 785
MscI TGGCCA 1 cut(s) 785
MseI TTAA 2 cut(s) 686, 770
MslI CAYNNNNRTG 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 785
MspI CCGG 4 cut(s) 133, 147, 443, 712
MspR9I CCNGG 3 cut(s) 443, 713, 787
MvaI CCWGG 1 cut(s) 787
MwoI GCNNNNNNNGC 6 cut(s) 200, 283, 569, 600, 827, 836
NciI CCSGG 2 cut(s) 443, 713
NdeII GATC 2 cut(s) 243, 361
NlaIII CATG 2 cut(s) 175, 373
NlaIV GGNNCC 4 cut(s) 380, 441, 716, 861
NspI RCATGY 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 563
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PfeI GAWTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 871
PkrI GCNGC 5 cut(s) 7, 117, 240, 288, 682
PpuMI RGGWCCY 3 cut(s) 312, 439, 715
Psp5II RGGWCCY 3 cut(s) 312, 439, 715
Psp6I CCWGG 1 cut(s) 785
PspGI CCWGG 1 cut(s) 785
PspN4I GGNNCC 4 cut(s) 380, 441, 716, 861
PspPI GGNCC 6 cut(s) 149, 312, 439, 709, 715, 874
PspPPI RGGWCCY 3 cut(s) 312, 439, 715
PstNI CAGNNNCTG 1 cut(s) 277
RsaI GTAC 4 cut(s) 103, 257, 305, 380
RsaNI GTAC 4 cut(s) 102, 256, 304, 379
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 686, 770
SatI GCNGC 5 cut(s) 6, 116, 239, 287, 681
Sau3AI GATC 2 cut(s) 243, 361
Sau96I GGNCC 6 cut(s) 149, 312, 439, 709, 715, 874
ScrFI CCNGG 3 cut(s) 443, 713, 787
SduI GDGCHC 5 cut(s) 487, 493, 621, 823, 864
SfaNI GCATC 2 cut(s) 391, 451
SfcI CTRYAG 2 cut(s) 198, 595
SinI GGWCC 4 cut(s) 312, 439, 709, 715
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 5 cut(s) 67, 79, 142, 217, 515
SsiI CCGC 4 cut(s) 6, 238, 611, 730
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 3 cut(s) 441, 711, 785
TaaI ACNGT 6 cut(s) 199, 265, 320, 355, 661, 768
TaiI ACGT 1 cut(s) 851
TaqI TCGA 2 cut(s) 77, 179
TasI AATT 5 cut(s) 67, 79, 142, 217, 515
TatI WGTACW 1 cut(s) 255
TauI GCSGC 2 cut(s) 8, 241
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 686, 770
Tru9I TTAA 2 cut(s) 686, 770
TscAI CASTG 1 cut(s) 268
TseI GCWGC 3 cut(s) 115, 286, 680
TspDTI ATGAA 2 cut(s) 155, 849
TspGWI ACGGA 2 cut(s) 89, 510
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 871
VpaK11BI GGWCC 4 cut(s) 312, 439, 709, 715
XapI RAATTY 4 cut(s) 67, 79, 217, 515
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.