Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015158

Physical Location & Seq

Genomic Coordinates Forward (+)

9065154 .. 9068228

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCGGGTATGGGTGACGGCTACGTTGGTACGGCTCAAGATGCGGTGAGGATACGGCGGCTTCAGAAGCAAAGAGAGGCCGAACGCAAAAAAATACAAGAGCTCAAGAGCAAGTCTGCCTCCGGCAATGACCAATCTGGTCTTCTCCAATTCGGCACCAGCTCGTGCGAGATTCTTGACACTGCTTTCAAGAAGGAAACAGTGGGTTTAGTTACAAGAGAGGAGTATGTGGAGAAGAGGGTTAATATTCGTAATAAGTTCGAGGAAGAAGAGAAGGAGAAACTGCAGAAGCTACAGCAAGAGGAAGAGGAGTTGCAGCTAGAGAAGCGTAACAAGAAGAGAAAGATTAAGGGATCTTCCCGCTTATCTTTTGCTGAAGATTTTGAGAATGGCAGTGATGAAGATGATGGAGAAAACAAGAGTTCTGGGACAGGGAACTTACGCTGCGGAAAACTTGGCAAGGACCCCTCAGTGGAAACGAATTTCCTGCCTGACAGTGAGAGGGAGGCGGAGGAACAAGCTGAACGTGAAAGGCTGAAGAAGCAGTGGCTTCGTGAACAAGAGCAGATTAAAAACGAGCCTCTTGAGATTACTTACAGTTACTGGGATGGGACTGGCCATAGACGAGTTATTCAGGTCCGCAAGGGTGACCCAATTGGGAATTTTCTGCGGGCTGTTCAGCAGCAGCTTGCCCCTGACTTCCGGGAGATTCGGACGGCATCAGTGGAGAATTTACTATATGTAAAGGAAGATCTTATTATTCCACATCAACACAGTTTCTATGAGCTGATCATTAACAAAGCGAGGGGGAAGAGTGGGCCGCTGTTTCACTTTGATGTGCATGAAGACGTGAGAACAATAGCAGATGCAACGATAGAGAAAGACGAGTCGCATGCGGGTAAAGTTGTGGAGAGGCATTGGTACGAGAAGAACAAGCATATATTCCCTGCTTCCAGATGGGAGATTTACGACCCGACAAAGAAATGGGAACGGTACACAGTCCATGGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010099 GO:0010114 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0032870 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035556 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071495 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XAP5

Protein Analysis

337

Amino Acids

39.24

Weight (kDa)

6.22

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XAP5	PF04921	194 - 333	3e-53	XAP5, circadian clock regulator C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21150
fragaria_vesca	FvH4_1g25110
malus_domestica	MD12G1008800.v1.1 MD14G1006100.v1.1
prunus_persica	Prupe.7G010600_v2.0.a1 Prupe.7G010600_v2.0.a1
pyrus_communis	pycom12g00660 pycom14g00480
rosa_chinensis	RchiOBHm_Chr2g0122771
rosa_multiflora	Rmu_sc0008259.1_g000003
rosa_roxburghii	Rroxscaffold_2G00121240
rosa_rugosa	Rorug02G0242300
rosa_samantha	Rh2AG300500 Rh2CG287200
rosa_wichuraiana	Rw2G023870 Rw2G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	9 cut(s)	44, 58, 361, 447, 509, 640, 670, 821, 896
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	3 cut(s)	481, 661, 730
AcuI	CTGAAG	3 cut(s)	47, 396, 557
AfaI	GTAC	3 cut(s)	31, 923, 995
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	850
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	7 cut(s)	103, 162, 292, 319, 521, 688, 787
AluI	AGCT	7 cut(s)	103, 162, 292, 319, 521, 688, 787
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	603
AoxI	GGCC	3 cut(s)	78, 616, 818
ApeKI	GCWGC	4 cut(s)	316, 444, 682, 685
ApoI	RAATTY	3 cut(s)	481, 661, 730
AspS9I	GGNCC	3 cut(s)	463, 637, 818
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	3 cut(s)	26, 58, 659
AvaII	GGWCC	2 cut(s)	463, 637
BalI	TGGCCA	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	134, 852
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	4 cut(s)	328, 431, 694, 697
BccI	CCATC	3 cut(s)	401, 602, 951
BceAI	ACGGC	4 cut(s)	34, 48, 71, 732
BcgI	CGANNNNNNTGC	6 cut(s)	469, 503, 533, 567, 875, 909
BciVI	GTATCC	1 cut(s)	45
BclI	TGATCA	1 cut(s)	789
BcnI	CCSGG	1 cut(s)	704
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	2 cut(s)	284, 293
BfuI	GTATCC	1 cut(s)	45
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	6 cut(s)	59, 317, 445, 683, 686, 821
BlsI	GCNGC	6 cut(s)	60, 318, 446, 684, 687, 822
Bme1390I	CCNGG	1 cut(s)	704
Bme18I	GGWCC	2 cut(s)	463, 637
BmgBI	CACGTC	1 cut(s)	850
BmgT120I	GGNCC	3 cut(s)	463, 637, 818
BmiI	GGNNCC	2 cut(s)	157, 465
BmrFI	CCNGG	1 cut(s)	704
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	3 cut(s)	31, 728, 856
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	2 cut(s)	134, 852
BpuEI	CTTGAG	3 cut(s)	21, 89, 605
BpuMI	CCSGG	1 cut(s)	704
BsaJI	CCNNGG	1 cut(s)	1003
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	2 cut(s)	608, 619
Bse3DI	GCAATG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	1003
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	608, 619
BseRI	GAGGAG	2 cut(s)	236, 323
BseXI	GCAGC	4 cut(s)	328, 431, 694, 697
BshFI	GGCC	3 cut(s)	80, 618, 820
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	123, 703
BslFI	GGGAC	2 cut(s)	442, 625
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	442, 625
BsnI	GGCC	3 cut(s)	80, 618, 820
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	353, 751, 789
Bsp19I	CCATGG	1 cut(s)	1003
BspACI	CCGC	9 cut(s)	44, 58, 361, 447, 509, 640, 670, 821, 896
BspANI	GGCC	3 cut(s)	80, 618, 820
BspCNI	CTCAG	1 cut(s)	482
BspLI	GGNNCC	2 cut(s)	157, 465
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	608, 619
BssECI	CCNNGG	1 cut(s)	1003
BssMI	GATC	3 cut(s)	353, 751, 789
BssSI	CACGAG	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	1003
Bst2BI	CACGAG	1 cut(s)	163
Bst4CI	ACNGT	6 cut(s)	202, 497, 599, 776, 993, 1000
Bst6I	CTCTTC	5 cut(s)	230, 264, 300, 332, 806
BstC8I	GCNNGC	3 cut(s)	672, 690, 894
BstDEI	CTNAG	1 cut(s)	469
BstDSI	CCRYGG	1 cut(s)	1003
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	3 cut(s)	356, 754, 792
BstMBI	GATC	3 cut(s)	353, 751, 789
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 67, 325, 541
BstNSI	RCATGY	1 cut(s)	896
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	702
BstSFI	CTRYAG	2 cut(s)	284, 293
BstV1I	GCAGC	4 cut(s)	328, 431, 694, 697
BstV2I	GAAGAC	2 cut(s)	134, 852
BstX2I	RGATCY	2 cut(s)	353, 751
BstYI	RGATCY	2 cut(s)	353, 751
BsuI	GTATCC	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	80, 618, 820
BtgI	CCRYGG	1 cut(s)	1003
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	1 cut(s)	613
BtsI	GCAGTG	3 cut(s)	180, 400, 551
BtsIMutI	CAGTG	7 cut(s)	180, 207, 400, 477, 502, 551, 729
Cac8I	GCNNGC	3 cut(s)	672, 690, 894
CaiI	CAGNNNCTG	1 cut(s)	603
Cfr13I	GGNCC	3 cut(s)	463, 637, 818
Csp6I	GTAC	3 cut(s)	30, 922, 994
CviAII	CATG	3 cut(s)	842, 893, 1004
CviQI	GTAC	3 cut(s)	30, 922, 994
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	3 cut(s)	355, 753, 791
DpnII	GATC	3 cut(s)	353, 751, 789
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	5 cut(s)	230, 264, 300, 332, 806
EarI	CTCTTC	5 cut(s)	230, 264, 300, 332, 806
EciI	GGCGGA	1 cut(s)	524
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	1003
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	463, 637
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	47, 396, 557
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	463
EcoO65I	GGTNACC	1 cut(s)	647
EcoT14I	CCWWGG	1 cut(s)	1003
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	1003
FaeI	CATG	3 cut(s)	845, 896, 1007
FaqI	GGGAC	2 cut(s)	442, 625
FatI	CATG	3 cut(s)	841, 892, 1003
FauI	CCCGC	3 cut(s)	368, 663, 889
FbaI	TGATCA	1 cut(s)	789
Fnu4HI	GCNGC	6 cut(s)	59, 317, 445, 683, 686, 821
FokI	GGATG	1 cut(s)	620
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	6 cut(s)	59, 317, 445, 683, 686, 821
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	6 cut(s)	59, 317, 445, 683, 686, 821
HaeIII	GGCC	3 cut(s)	80, 618, 820
HapII	CCGG	2 cut(s)	123, 703
Hin1II	CATG	3 cut(s)	845, 896, 1007
HinfI	GANTC	3 cut(s)	172, 709, 887
HpaII	CCGG	2 cut(s)	123, 703
HphI	GGTGA	3 cut(s)	26, 58, 659
Hpy166II	GTNNAC	2 cut(s)	557, 996
Hpy188I	TCNGA	2 cut(s)	66, 714
Hpy188III	TCNNGA	7 cut(s)	38, 106, 176, 190, 554, 584, 954
Hpy8I	GTNNAC	2 cut(s)	557, 996
HpyAV	CCTTC	2 cut(s)	187, 268
HpyCH4III	ACNGT	6 cut(s)	202, 497, 599, 776, 993, 1000
HpyCH4IV	ACGT	3 cut(s)	24, 526, 849
HpyCH4V	TGCA	4 cut(s)	286, 316, 841, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 67, 325, 541
HpyF3I	CTNAG	1 cut(s)	469
HpySE526I	ACGT	3 cut(s)	24, 526, 849
Hsp92II	CATG	3 cut(s)	845, 896, 1007
Ksp22I	TGATCA	1 cut(s)	789
Kzo9I	GATC	3 cut(s)	353, 751, 789
Lsp1109I	GCAGC	4 cut(s)	328, 431, 694, 697
LweI	GCATC	3 cut(s)	31, 728, 856
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	3 cut(s)	24, 526, 849
MaeIII	GTNAC	5 cut(s)	14, 211, 329, 599, 647
MalI	GATC	3 cut(s)	355, 753, 791
MboI	GATC	3 cut(s)	353, 751, 789
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	2 cut(s)	353, 751
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	5 cut(s)	149, 481, 654, 661, 730
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	896
Mox20I	TGGCCA	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	5 cut(s)	243, 348, 570, 795, 1012
MslI	CAYNNNNRTG	1 cut(s)	834
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	2 cut(s)	123, 703
MspR9I	CCNGG	1 cut(s)	704
MunI	CAATTG	1 cut(s)	654
MwoI	GCNNNNNNNGC	4 cut(s)	41, 67, 325, 541
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	1003
NdeII	GATC	3 cut(s)	353, 751, 789
NlaIII	CATG	3 cut(s)	845, 896, 1007
NlaIV	GGNNCC	2 cut(s)	157, 465
NmuCI	GTSAC	2 cut(s)	14, 647
NspI	RCATGY	1 cut(s)	896
PaeI	GCATGC	1 cut(s)	896
PfeI	GAWTC	2 cut(s)	172, 709
PfoI	TCCNGGA	1 cut(s)	702
PkrI	GCNGC	6 cut(s)	60, 318, 446, 684, 687, 822
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
PpuMI	RGGWCCY	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	463
PspEI	GGTNACC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	157, 465
PspPI	GGNCC	3 cut(s)	463, 637, 818
PspPPI	RGGWCCY	1 cut(s)	463
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	2 cut(s)	353, 751
RsaI	GTAC	3 cut(s)	31, 923, 995
RsaNI	GTAC	3 cut(s)	30, 922, 994
RseI	CAYNNNNRTG	1 cut(s)	834
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	5 cut(s)	243, 348, 570, 795, 1012
SatI	GCNGC	6 cut(s)	59, 317, 445, 683, 686, 821
Sau3AI	GATC	3 cut(s)	353, 751, 789
Sau96I	GGNCC	3 cut(s)	463, 637, 818
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	31, 728, 856
SfcI	CTRYAG	2 cut(s)	284, 293
SinI	GGWCC	2 cut(s)	463, 637
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	3 cut(s)	36, 104, 584
SmoI	CTYRAG	3 cut(s)	36, 104, 584
SphI	GCATGC	1 cut(s)	896
Sse9I	AATT	5 cut(s)	149, 481, 654, 661, 730
SsiI	CCGC	9 cut(s)	44, 58, 361, 447, 509, 640, 670, 821, 896
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	1003
TaaI	ACNGT	6 cut(s)	202, 497, 599, 776, 993, 1000
TaiI	ACGT	3 cut(s)	27, 529, 852
TaqI	TCGA	1 cut(s)	261
TasI	AATT	5 cut(s)	149, 481, 654, 661, 730
TauI	GCSGC	2 cut(s)	61, 823
TfiI	GAWTC	2 cut(s)	172, 709
Tru1I	TTAA	5 cut(s)	243, 348, 570, 795, 1012
Tru9I	TTAA	5 cut(s)	243, 348, 570, 795, 1012
TscAI	CASTG	7 cut(s)	187, 207, 400, 477, 502, 551, 729
TseFI	GTSAC	2 cut(s)	14, 647
TseI	GCWGC	4 cut(s)	316, 444, 682, 685
Tsp45I	GTSAC	2 cut(s)	14, 647
TspDTI	ATGAA	2 cut(s)	414, 858
TspRI	CASTG	7 cut(s)	187, 207, 400, 477, 502, 551, 729
VpaK11BI	GGWCC	2 cut(s)	463, 637
XapI	RAATTY	3 cut(s)	481, 661, 730
XceI	RCATGY	1 cut(s)	896
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.