Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0015158

Physical Location & Seq

Genomic Coordinates Reverse (-)

603715 .. 607093

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00660.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCGGGCATGGGAGACGGATATGTGGGCACGGCCCAAGATGCCGTGAGGATCCGAAGGCTTGAGAAGCAAAGAGAAGCCGAGCGCCAGAAAATTCATGAGCTCAAAAGCAAGTCAGCCAACGATACAGGCCAGCCGGGTCTCCTCCAATTCGGGTCAAGTACCTCTGAGATTCTTGAGACGGCATTTAAGAAGGAAACCATTGGTTTGGTAACAAGGGAGCAGTATGTGGAGAAGAAAGAAAATATTAAGATCAAATTTGAGGAGGAAGAAAAGGAGAAACTTCAGAAGCTACAACAAGAGGAGGAGCTTCTTCAATTACAAAAGCGAAAGAAGAGGAAGATAAAGGGGGGTTCTCGATTGTCCTTTGCAGATGACATTGAGGATGGAATTGAAGAGGAAGATGGTGAAAATAAAAGCACAGAGGCTACAAGATTACGCTGCAGTAGACTTGGGAAAGATCCTACGGTGGAGACCAGCTTTCTGCCAGATAGTGAGCGGGAGGCAGAGGAACAAGCTGAGCGTGAAAGGTTGCGGAAGCAGTGGCAGACTGAGCAGGACAATATACGAAAGGAGGCACTTCAAATTACTTACAGCTATTGGGATGGAACTGGGCATAGGAGAGTGCTCAAGGTAACGAAAGGTGATAAAATAGGAGATTTCCTTAAGGCTGTTCAACAGCAACTTGCACCTGAGTTTCGAGAGGTGCGAACCACCTCAGTGGAGAATTTGCTATATGTAAAAGAAGATCTTATCATTCCACATCTTTTTCATTTTGATGTGCATGAGGATGTGCGAACAATTGCTGATGCTACAATAGAGAAGGATGAGTCTCATGCTGGGAAGGTTGTTGAGAGGCATTGGTATGAGAAGAACAAGCATATTTTCCCTGCTTCCAGATGGGAGATATATGATCCAACGAAGAAATGGGAGCGTTATACCATCCACGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010099 GO:0010114 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0032870 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035556 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071495 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XAP5

Protein Analysis

319

Amino Acids

37.23

Weight (kDa)

5.97

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21150
fragaria_vesca	FvH4_1g25110
malus_domestica	MD12G1008800.v1.1 MD14G1006100.v1.1
prunus_persica	Prupe.7G010600_v2.0.a1 Prupe.7G010600_v2.0.a1
pyrus_communis	pycom12g00660 pycom14g00480
rosa_chinensis	RchiOBHm_Chr2g0122771
rosa_multiflora	Rmu_sc0008259.1_g000003
rosa_roxburghii	Rroxscaffold_2G00121240
rosa_rugosa	Rorug02G0242300
rosa_samantha	Rh2AG300500 Rh2CG287200
rosa_wichuraiana	Rw2G023870 Rw2G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	2 cut(s)	499, 535
AclWI	GGATC	4 cut(s)	46, 59, 455, 908
AcsI	RAATTY	3 cut(s)	93, 257, 727
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	948
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	4 cut(s)	317, 395, 584, 677
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	6 cut(s)	103, 292, 310, 480, 518, 597
AluI	AGCT	6 cut(s)	103, 292, 310, 480, 518, 597
Alw21I	GWGCWC	2 cut(s)	105, 630
Alw26I	GTCTC	5 cut(s)	9, 146, 173, 467, 837
AlwI	GGATC	4 cut(s)	46, 59, 455, 908
AoxI	GGCC	2 cut(s)	33, 130
ApeKI	GCWGC	1 cut(s)	441
ApoI	RAATTY	3 cut(s)	93, 257, 727
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	419, 656
BaeGI	GKGCMC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	105, 630
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	5 cut(s)	380, 398, 599, 894, 950
BceAI	ACGGC	3 cut(s)	29, 48, 198
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	5 cut(s)	9, 146, 173, 467, 837
BfmI	CTRYAG	1 cut(s)	442
BfoI	RGCGCY	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	665
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	1 cut(s)	442
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	2 cut(s)	31, 799
BmuI	ACTGGG	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	3 cut(s)	83, 197, 614
BpuMI	CCSGG	1 cut(s)	138
BsaI	GGTCTC	2 cut(s)	146, 467
BsaJI	CCNNGG	1 cut(s)	946
Bsc4I	CCNNNNNNNGG	1 cut(s)	948
Bse1I	ACTGG	1 cut(s)	616
BseDI	CCNNGG	1 cut(s)	946
BseGI	GGATG	5 cut(s)	391, 610, 796, 832, 942
BseLI	CCNNNNNNNGG	1 cut(s)	948
BseMII	CTCAG	5 cut(s)	159, 510, 543, 684, 732
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	4 cut(s)	134, 278, 317, 320
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	428
BseYI	CCCAGC	1 cut(s)	839
BshFI	GGCC	2 cut(s)	35, 132
BsiHKAI	GWGCWC	2 cut(s)	105, 630
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	948
BsmAI	GTCTC	5 cut(s)	9, 146, 173, 467, 837
BsmBI	CGTCTC	2 cut(s)	9, 173
BsnI	GGCC	2 cut(s)	35, 132
Bso31I	GGTCTC	2 cut(s)	146, 467
Bsp1286I	GDGCHC	3 cut(s)	32, 105, 630
Bsp143I	GATC	5 cut(s)	51, 252, 460, 748, 913
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	2 cut(s)	499, 535
BspANI	GGCC	2 cut(s)	35, 132
BspCNI	CTCAG	5 cut(s)	160, 511, 544, 685, 731
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	53
BspMAI	CTGCAG	1 cut(s)	446
BspPI	GGATC	4 cut(s)	46, 59, 455, 908
BspTI	CTTAAG	1 cut(s)	665
BspTNI	GGTCTC	2 cut(s)	146, 467
BsrBI	CCGCTC	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	616
BssECI	CCNNGG	1 cut(s)	946
BssMI	GATC	5 cut(s)	51, 252, 460, 748, 913
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	2 cut(s)	329, 390
BstAFI	CTTAAG	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	5 cut(s)	168, 519, 552, 693, 718
BstDSI	CCRYGG	1 cut(s)	946
BstF5I	GGATG	5 cut(s)	391, 610, 796, 832, 942
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	5 cut(s)	54, 255, 463, 751, 916
BstMAI	GTCTC	5 cut(s)	9, 146, 173, 467, 837
BstMBI	GATC	5 cut(s)	51, 252, 460, 748, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 67, 553
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	428
BstX2I	RGATCY	3 cut(s)	51, 460, 748
BstXI	CCANNNNNNTGG	2 cut(s)	208, 721
BstYI	RGATCY	3 cut(s)	51, 460, 748
BsuRI	GGCC	2 cut(s)	35, 132
BtgI	CCRYGG	1 cut(s)	946
BtsCI	GGATG	5 cut(s)	391, 610, 796, 832, 942
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	548, 726
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	4 cut(s)	10, 98, 785, 836
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	5 cut(s)	168, 519, 552, 693, 718
DpnI	GATC	5 cut(s)	53, 254, 462, 750, 915
DpnII	GATC	5 cut(s)	51, 252, 460, 748, 913
Eam1104I	CTCTTC	2 cut(s)	329, 390
EarI	CTCTTC	2 cut(s)	329, 390
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	146, 467
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	2 cut(s)	9, 173
FaeI	CATG	4 cut(s)	13, 101, 788, 839
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FatI	CATG	4 cut(s)	9, 97, 784, 835
FauI	CCCGC	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	442
FokI	GGATG	5 cut(s)	398, 617, 803, 839, 929
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	442
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	442
GsaI	CCCAGC	1 cut(s)	843
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	35, 132
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	13, 101, 788, 839
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	172, 830
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	419, 656
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	3 cut(s)	56, 169, 288
Hpy188III	TCNNGA	5 cut(s)	98, 176, 357, 701, 897
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	4 cut(s)	51, 187, 817, 838
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4V	TGCA	4 cut(s)	371, 444, 689, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 67, 553
HpyF3I	CTNAG	5 cut(s)	168, 519, 552, 693, 718
Hsp92II	CATG	4 cut(s)	13, 101, 788, 839
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	51, 252, 460, 748, 913
LmnI	GCTCC	3 cut(s)	220, 307, 931
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	31, 799
MaeIII	GTNAC	2 cut(s)	211, 634
MalI	GATC	5 cut(s)	53, 254, 462, 750, 915
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	5 cut(s)	51, 252, 460, 748, 913
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	3 cut(s)	51, 460, 748
MhlI	GDGCHC	3 cut(s)	32, 105, 630
MluCI	AATT	8 cut(s)	93, 149, 257, 317, 390, 585, 727, 801
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	1 cut(s)	941
MseI	TTAA	3 cut(s)	189, 249, 666
MslI	CAYNNNNRTG	4 cut(s)	719, 777, 789, 864
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	801
MwoI	GCNNNNNNNGC	3 cut(s)	41, 67, 553
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	5 cut(s)	51, 252, 460, 748, 913
NlaIII	CATG	4 cut(s)	13, 101, 788, 839
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	719
PagI	TCATGA	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	443
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
Psp124BI	GAGCTC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	839
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	446
PsuI	RGATCY	3 cut(s)	51, 460, 748
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	4 cut(s)	719, 777, 789, 864
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	189, 249, 666
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	5 cut(s)	51, 252, 460, 748, 913
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	3 cut(s)	32, 105, 630
SfaNI	GCATC	2 cut(s)	31, 799
SfcI	CTRYAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	4 cut(s)	719, 777, 789, 864
SmlI	CTYRAG	4 cut(s)	62, 176, 629, 665
SmoI	CTYRAG	4 cut(s)	62, 176, 629, 665
Sse9I	AATT	8 cut(s)	93, 149, 257, 317, 390, 585, 727, 801
SsiI	CCGC	2 cut(s)	499, 535
SspI	AATATT	1 cut(s)	247
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	469
TaqI	TCGA	2 cut(s)	358, 700
TasI	AATT	8 cut(s)	93, 149, 257, 317, 390, 585, 727, 801
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	3 cut(s)	189, 249, 666
Tru9I	TTAA	3 cut(s)	189, 249, 666
TscAI	CASTG	2 cut(s)	548, 726
TseI	GCWGC	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	86, 761
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	548, 726
Vha464I	CTTAAG	1 cut(s)	665
XapI	RAATTY	3 cut(s)	93, 257, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	924
XmiI	GTMKAC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.