Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015158

Physical Location & Seq

Genomic Coordinates Reverse (-)

16897023 .. 16901441

Gene Structure 4419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCGGGTATGGGAGACGGGTACGTGGGCACGGCCCAGGACGCCGTGAGGATCCGAAGGCTGGAGAAGCAGAGAGAAGCCGAGCGCCAGAAAATCCTAGAGCTCAAGACCAAGTCTGCCTCCGACAAAGGCCAGCCCGGCCTCCTCCAATTCGGCTCCAGCACTTCTGAGATTCTGGAGACGGCGTTCAAGAAAGAGACCGTCGGATTGGTCACGAGGGAGCAGTACGTTGAGAAGAGAGTGAATATTCGGAACAAAATCGAGGAGGAGGAGAAGGAGAAGCTCCAGAAGCTTCAGCAGGAAGAGGAGGAGTTTCAGTTACAGAAGAGGAAGAAGAGGAAGGTGAAGGGGATCAATCGGTTGTCGTTTGCGGATGACATTGAGGATCCAAGTGAAGAGGAAGATGATGGAAATAAAAGTACAGAGAATACCAAATCACGGTCTGGTAGATTTGGCAAAGATCCTACTGTCGAAACAAGCTTTCTGCCAGATAGTGAGCGGGAGGCAGAGGAACAAGCTGAGCGTGAGAGATTGCGAAAACTGTGGTTTCTTGAGCAGGAGAGAATACGAAATGAGCCGCTTCAAATTACTTACAGTTACTGGGATGGAGCAGGGCATAGGCGAACTATCCAGGTACGAAAGGGGGATAAAATAGGAGATTTTCTTCGCTCTGTCCAACAGCAACTAGCACCTGAGTTTCGAGAAGTTCGAACCACCTCAGTGGAGAATTTGCTATATGTAAAAGAAGATCTTATCATTCCACATCAACATAGTTTCTATGAGCTAATTGTAAACAAGGCAAGGGGAAAAAGTGGACCGCTTTTCCATTTTGATGTGCATGAGGATGTGCGAACAATTGCTGATGCTACGATAGAGAAGGATGAGTCTCATGCTGGGAAGGTTGTTGAGAGGCATTGGTATGACAAGAATAAGCATATCTTCCCTGCTTCTAGATGGGAGATATACGATCCAACAAAGAAATGGGAGCGTTACACCATCCATGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010099 GO:0010114 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0032870 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035556 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071495 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XAP5

Protein Analysis

337

Amino Acids

39.45

Weight (kDa)

6.38

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XAP5	PF04921	193 - 332	1.1e-52	XAP5, circadian clock regulator C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21150
fragaria_vesca	FvH4_1g25110
malus_domestica	MD12G1008800.v1.1 MD14G1006100.v1.1
prunus_persica	Prupe.7G010600_v2.0.a1 Prupe.7G010600_v2.0.a1
pyrus_communis	pycom12g00660 pycom14g00480
rosa_chinensis	RchiOBHm_Chr2g0122771
rosa_multiflora	Rmu_sc0008259.1_g000003
rosa_roxburghii	Rroxscaffold_2G00121240
rosa_rugosa	Rorug02G0242300
rosa_samantha	Rh2AG300500 Rh2CG287200
rosa_wichuraiana	Rw2G023870 Rw2G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	499
AciI	CCGC	4 cut(s)	371, 499, 578, 818
AclWI	GGATC	7 cut(s)	46, 59, 359, 380, 393, 455, 962
AcsI	RAATTY	1 cut(s)	727
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	4 cut(s)	23, 227, 421, 636
AfiI	CCNNNNNNNGG	3 cut(s)	61, 438, 1002
AgsI	TTSAA	2 cut(s)	190, 584
AjnI	CCWGG	2 cut(s)	36, 630
AleI	CACNNNNGTG	1 cut(s)	719
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	103, 283, 292, 480, 518, 784
AluI	AGCT	6 cut(s)	103, 283, 292, 480, 518, 784
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	4 cut(s)	9, 173, 191, 891
AlwI	GGATC	7 cut(s)	46, 59, 359, 380, 393, 455, 962
AlwNI	CAGNNNCTG	1 cut(s)	600
AoxI	GGCC	3 cut(s)	33, 130, 139
ApoI	RAATTY	1 cut(s)	727
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	34, 815
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	355
AsuII	TTCGAA	1 cut(s)	709
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	32
BamHI	GGATCC	2 cut(s)	51, 385
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	4 cut(s)	401, 599, 948, 1004
BceAI	ACGGC	3 cut(s)	29, 48, 198
BciT130I	CCWGG	2 cut(s)	38, 632
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	4 cut(s)	9, 173, 191, 891
BfaI	CTAG	3 cut(s)	98, 686, 951
BfoI	RGCGCY	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	138
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	1 cut(s)	578
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	579
Bme1390I	CCNGG	3 cut(s)	38, 138, 632
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	2 cut(s)	34, 815
BmiI	GGNNCC	3 cut(s)	53, 157, 387
BmrFI	CCNGG	3 cut(s)	38, 138, 632
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	1 cut(s)	853
BmuI	ACTGGG	1 cut(s)	610
BpmI	CTGGAG	4 cut(s)	83, 142, 197, 269
Bpu1102I	GCTNAGC	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	709
BpuEI	CTTGAG	2 cut(s)	89, 572
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	36, 1000
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 302, 332
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 438, 1002
Bse1I	ACTGG	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	38, 632
BseDI	CCNNGG	2 cut(s)	36, 1000
BseGI	GGATG	5 cut(s)	379, 610, 850, 886, 996
BseLI	CCNNNNNNNGG	3 cut(s)	61, 438, 1002
BseMII	CTCAG	4 cut(s)	159, 510, 684, 732
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	6 cut(s)	134, 278, 281, 284, 320, 323
BseSI	GKGCMC	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	893
BshFI	GGCC	3 cut(s)	35, 132, 141
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	3 cut(s)	61, 438, 1002
BsmAI	GTCTC	4 cut(s)	9, 173, 191, 891
BsmBI	CGTCTC	2 cut(s)	9, 173
BsnI	GGCC	3 cut(s)	35, 132, 141
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	32, 105
Bsp143I	GATC	6 cut(s)	51, 351, 385, 460, 748, 967
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp19I	CCATGG	1 cut(s)	1000
BspACI	CCGC	4 cut(s)	371, 499, 578, 818
BspANI	GGCC	3 cut(s)	35, 132, 141
BspCNI	CTCAG	4 cut(s)	160, 511, 685, 731
BspLI	GGNNCC	3 cut(s)	53, 157, 387
BspPI	GGATC	7 cut(s)	46, 59, 359, 380, 393, 455, 962
BspT104I	TTCGAA	1 cut(s)	709
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	36, 1000
BssMI	GATC	6 cut(s)	51, 351, 385, 460, 748, 967
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	1000
Bst2BI	CACGAG	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	38, 632
Bst4CI	ACNGT	5 cut(s)	202, 441, 469, 543, 596
Bst6I	CTCTTC	5 cut(s)	230, 297, 320, 329, 390
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	25
BstBI	TTCGAA	1 cut(s)	709
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	4 cut(s)	168, 519, 693, 718
BstDSI	CCRYGG	1 cut(s)	1000
BstF5I	GGATG	5 cut(s)	379, 610, 850, 886, 996
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	6 cut(s)	54, 354, 388, 463, 751, 970
BstMAI	GTCTC	4 cut(s)	9, 173, 191, 891
BstMBI	GATC	6 cut(s)	51, 351, 385, 460, 748, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 67, 138, 289
BstNI	CCWGG	2 cut(s)	38, 632
BstSCI	CCNGG	3 cut(s)	36, 136, 630
BstSLI	GKGCMC	1 cut(s)	32
BstX2I	RGATCY	4 cut(s)	51, 385, 460, 748
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	4 cut(s)	51, 385, 460, 748
BsuRI	GGCC	3 cut(s)	35, 132, 141
BtgI	CCRYGG	1 cut(s)	1000
BtsCI	GGATG	5 cut(s)	379, 610, 850, 886, 996
BtsIMutI	CAGTG	1 cut(s)	726
Cac8I	GCNNGC	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	600
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	34, 815
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	4 cut(s)	22, 226, 420, 635
CviAII	CATG	3 cut(s)	839, 890, 1001
CviQI	GTAC	4 cut(s)	22, 226, 420, 635
DdeI	CTNAG	4 cut(s)	168, 519, 693, 718
DpnI	GATC	6 cut(s)	53, 353, 387, 462, 750, 969
DpnII	GATC	6 cut(s)	51, 351, 385, 460, 748, 967
Eam1104I	CTCTTC	5 cut(s)	230, 297, 320, 329, 390
EarI	CTCTTC	5 cut(s)	230, 297, 320, 329, 390
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	1000
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	36, 630
EcoT14I	CCWWGG	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	1000
Esp3I	CGTCTC	2 cut(s)	9, 173
FaeI	CATG	3 cut(s)	842, 893, 1004
FalI	AAGNNNNNCTT	4 cut(s)	735, 767, 923, 955
FatI	CATG	3 cut(s)	838, 889, 1000
FauI	CCCGC	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	578
FokI	GGATG	5 cut(s)	386, 617, 857, 893, 983
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	578
FspBI	CTAG	3 cut(s)	98, 686, 951
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	578
GsaI	CCCAGC	1 cut(s)	897
GsuI	CTGGAG	4 cut(s)	83, 142, 197, 269
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	35, 132, 141
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	842, 893, 1004
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HindIII	AAGCTT	2 cut(s)	290, 478
HinfI	GANTC	2 cut(s)	172, 884
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	793, 815
Hpy188I	TCNGA	5 cut(s)	56, 124, 169, 206, 252
Hpy188III	TCNNGA	8 cut(s)	106, 176, 190, 214, 286, 551, 701, 951
Hpy8I	GTNNAC	2 cut(s)	793, 815
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	6 cut(s)	51, 268, 334, 340, 871, 892
HpyCH4III	ACNGT	5 cut(s)	202, 441, 469, 543, 596
HpyCH4IV	ACGT	2 cut(s)	24, 228
HpyCH4V	TGCA	1 cut(s)	838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 67, 138, 289
HpyF3I	CTNAG	4 cut(s)	168, 519, 693, 718
HpySE526I	ACGT	2 cut(s)	24, 228
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	842, 893, 1004
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	6 cut(s)	51, 351, 385, 460, 748, 967
LmnI	GCTCC	5 cut(s)	161, 220, 288, 608, 985
LweI	GCATC	1 cut(s)	853
MaeI	CTAG	3 cut(s)	98, 686, 951
MaeII	ACGT	2 cut(s)	24, 228
MaeIII	GTNAC	4 cut(s)	211, 318, 596, 989
MalI	GATC	6 cut(s)	53, 353, 387, 462, 750, 969
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	6 cut(s)	51, 351, 385, 460, 748, 967
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	4 cut(s)	51, 385, 460, 748
MhlI	GDGCHC	2 cut(s)	32, 105
MluCI	AATT	5 cut(s)	149, 585, 727, 786, 855
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	4 cut(s)	147, 184, 700, 995
MslI	CAYNNNNRTG	4 cut(s)	719, 831, 843, 918
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	3 cut(s)	38, 138, 632
MunI	CAATTG	1 cut(s)	855
MvaI	CCWGG	2 cut(s)	38, 632
MwoI	GCNNNNNNNGC	4 cut(s)	41, 67, 138, 289
NciI	CCSGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	1000
NdeII	GATC	6 cut(s)	51, 351, 385, 460, 748, 967
NlaIII	CATG	3 cut(s)	842, 893, 1004
NlaIV	GGNNCC	3 cut(s)	53, 157, 387
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	709
OliI	CACNNNNGTG	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	172
PflFI	GACNNNGTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	579
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
Ppu21I	YACGTR	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	36, 630
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	2 cut(s)	36, 630
PspN4I	GGNNCC	3 cut(s)	53, 157, 387
PspPI	GGNCC	2 cut(s)	34, 815
PstNI	CAGNNNCTG	1 cut(s)	600
PsuI	RGATCY	4 cut(s)	51, 385, 460, 748
PsyI	GACNNNGTC	1 cut(s)	112
RsaI	GTAC	4 cut(s)	23, 227, 421, 636
RsaNI	GTAC	4 cut(s)	22, 226, 420, 635
RseI	CAYNNNNRTG	4 cut(s)	719, 831, 843, 918
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	578
Sau3AI	GATC	6 cut(s)	51, 351, 385, 460, 748, 967
Sau96I	GGNCC	2 cut(s)	34, 815
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	3 cut(s)	38, 138, 632
SduI	GDGCHC	2 cut(s)	32, 105
SfaNI	GCATC	1 cut(s)	853
SfiI	GGCCNNNNNGGCC	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	709
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	4 cut(s)	719, 831, 843, 918
SmlI	CTYRAG	2 cut(s)	104, 551
SmoI	CTYRAG	2 cut(s)	104, 551
Sse9I	AATT	5 cut(s)	149, 585, 727, 786, 855
SsiI	CCGC	4 cut(s)	371, 499, 578, 818
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	3 cut(s)	98, 686, 951
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	36, 136, 630
StyI	CCWWGG	1 cut(s)	1000
TaaI	ACNGT	5 cut(s)	202, 441, 469, 543, 596
TaiI	ACGT	2 cut(s)	27, 231
TaqI	TCGA	4 cut(s)	261, 471, 700, 709
TasI	AATT	5 cut(s)	149, 585, 727, 786, 855
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	1 cut(s)	580
TfiI	GAWTC	1 cut(s)	172
TscAI	CASTG	1 cut(s)	726
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	1 cut(s)	726
Tth111I	GACNNNGTC	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	1 cut(s)	727
XbaI	TCTAGA	1 cut(s)	950
XcmI	CCANNNNNNNNNTGG	1 cut(s)	978
XspI	CTAG	3 cut(s)	98, 686, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.