Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016713

Physical Location & Seq

Genomic Coordinates Reverse (-)

9356983 .. 9357967

Gene Structure 985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTATGGCTACGCGAGCGATTCGATACCAGTTACCGTCACCGAGATTTAGAGCTCCTAGATGCGAATCATCGGAACCGATTAAGCAGATTCAGATCCAGCAACGACCAAGAGGTGGCGATTTAGCCGAGAACGGGAAGATCGTGCTCCAACCAAGGCTTTGCACGCTGAGATCTTATGGATCTGATATGGTCATCGCTAAAAAGGACGGCGGAGATGGTGGAGGAGGAGGATCTGATGTTGAGTTAGCGTCTCCGTTTTTTGAGACGCTTACGGATTACATAGAGAGTTCGAAGAAGAGTCAGGATTTCGAAACCATCTCCGGTAGACTCGCCATGATTGTATTTGCGGTGACGGTGACGGAGGAGATTGTTACGGGGAACTCGTTGTTTAAGAAACTAGATGTGGAAGGATTGAGTGAAGCTATTGGAGCTGGTCTCGCCGCGATGGGATGCGCGGCGATGTTTGCTTGGTTAACGATTTCTCGGAACAGAGTCGGACGGATCTTTACAGTGAGTTGCAACTCGTTCATTGACTCGTTGGTTGATCAGATCGTTGATGGACTGTTCTACGATACCAAGCCTAGTGATTGGTCTGATGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009987 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051716 GO:0055035 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

202

Amino Acids

21.99

Weight (kDa)

4.99

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21970
fragaria_vesca	FvH4_1g22220
malus_domestica	MD15G1333400.v1.1
prunus_persica	Prupe.6G173300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0116361
rosa_laevigata	RLG00000018262
rosa_multiflora	Rmu_ssc0000108.1_g000004
rosa_roxburghii	Rroxscaffold_2G00127290
rosa_rugosa	Rorug02G0205900
rosa_samantha	Rh2AG261400 Rh2BG272800 Rh2CG267800 Rh2DG269600
rosa_wichuraiana	Rw2G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	328
AccII	CGCG	3 cut(s)	16, 446, 458
AciI	CCGC	4 cut(s)	213, 350, 444, 458
AclWI	GGATC	4 cut(s)	91, 190, 241, 512
AfiI	CCNNNNNNNGG	2 cut(s)	116, 135
AluBI	AGCT	3 cut(s)	56, 425, 434
AluI	AGCT	3 cut(s)	56, 425, 434
Alw21I	GWGCWC	2 cut(s)	58, 150
Alw26I	GTCTC	3 cut(s)	258, 260, 443
AlwI	GGATC	4 cut(s)	91, 190, 241, 512
AspLEI	GCGC	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	33, 364, 370
AsuII	TTCGAA	2 cut(s)	293, 312
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	58, 150
BccI	CCATC	4 cut(s)	212, 326, 442, 554
BceAI	ACGGC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	3 cut(s)	258, 260, 443
BfaI	CTAG	3 cut(s)	60, 401, 585
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	2 cut(s)	444, 459
BlsI	GCNGC	2 cut(s)	445, 460
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	53, 443
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
Bpu14I	TTCGAA	2 cut(s)	293, 312
BsaBI	GATNNNNATC	2 cut(s)	67, 95
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 135
Bse1I	ACTGG	1 cut(s)	31
Bse8I	GATNNNNATC	2 cut(s)	67, 95
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	458
BseJI	GATNNNNATC	2 cut(s)	67, 95
BseLI	CCNNNNNNNGG	2 cut(s)	116, 135
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	3 cut(s)	240, 243, 380
Bsh1236I	CGCG	3 cut(s)	16, 446, 458
BsiHKAI	GWGCWC	2 cut(s)	58, 150
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	116, 135
BsmAI	GTCTC	3 cut(s)	258, 260, 443
BsmBI	CGTCTC	2 cut(s)	258, 260
Bso31I	GGTCTC	1 cut(s)	443
Bsp119I	TTCGAA	2 cut(s)	293, 312
Bsp1286I	GDGCHC	2 cut(s)	58, 150
Bsp143I	GATC	9 cut(s)	96, 141, 173, 182, 233, 504, 547, 552, 601
BspACI	CCGC	4 cut(s)	213, 350, 444, 458
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	3 cut(s)	16, 446, 458
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	4 cut(s)	91, 190, 241, 512
BspT104I	TTCGAA	2 cut(s)	293, 312
BspTNI	GGTCTC	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	9 cut(s)	96, 141, 173, 182, 233, 504, 547, 552, 601
BssT1I	CCWWGG	1 cut(s)	155
Bst4CI	ACNGT	4 cut(s)	39, 358, 514, 567
Bst6I	CTCTTC	1 cut(s)	293
BstBI	TTCGAA	2 cut(s)	293, 312
BstC8I	GCNNGC	2 cut(s)	18, 167
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	458
BstFNI	CGCG	3 cut(s)	16, 446, 458
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	9 cut(s)	99, 144, 176, 185, 236, 507, 550, 555, 604
BstMAI	GTCTC	3 cut(s)	258, 260, 443
BstMBI	GATC	9 cut(s)	96, 141, 173, 182, 233, 504, 547, 552, 601
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 166, 431, 440, 467
BstUI	CGCG	3 cut(s)	16, 446, 458
BstX2I	RGATCY	5 cut(s)	96, 173, 182, 233, 504
BstYI	RGATCY	5 cut(s)	96, 173, 182, 233, 504
BtgZI	GCGATG	3 cut(s)	181, 461, 476
BtsCI	GGATG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	18, 167
CfoI	GCGC	1 cut(s)	458
CseI	GACGC	2 cut(s)	240, 277
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	8 cut(s)	5, 11, 56, 128, 160, 425, 434, 583
CviKI_1	RGCY	8 cut(s)	5, 11, 56, 128, 160, 425, 434, 583
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	9 cut(s)	98, 143, 175, 184, 235, 506, 549, 554, 603
DpnII	GATC	9 cut(s)	96, 141, 173, 182, 233, 504, 547, 552, 601
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	2 cut(s)	258, 260
FaeI	CATG	1 cut(s)	340
FaiI	YATR	5 cut(s)	8, 180, 191, 284, 338
FatI	CATG	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	444, 459
FokI	GGATG	1 cut(s)	465
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	444, 459
FspBI	CTAG	3 cut(s)	60, 401, 585
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	2 cut(s)	444, 459
HapII	CCGG	1 cut(s)	324
HgaI	GACGC	2 cut(s)	240, 277
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	7 cut(s)	22, 68, 91, 301, 330, 495, 536
HpaI	GTTAAC	1 cut(s)	477
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	3 cut(s)	33, 364, 370
Hpy166II	GTNNAC	2 cut(s)	329, 477
Hpy188I	TCNGA	8 cut(s)	76, 96, 187, 238, 489, 500, 552, 598
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	2 cut(s)	329, 477
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	4 cut(s)	39, 358, 514, 567
HpyCH4V	TGCA	2 cut(s)	165, 522
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 166, 431, 440, 467
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	9 cut(s)	96, 141, 173, 182, 233, 504, 547, 552, 601
LmnI	GCTCC	3 cut(s)	61, 153, 431
LpnPI	CCDG	5 cut(s)	44, 113, 290, 337, 420
LweI	GCATC	2 cut(s)	53, 443
MaeI	CTAG	3 cut(s)	60, 401, 585
MaeIII	GTNAC	5 cut(s)	33, 39, 352, 358, 373
MalI	GATC	9 cut(s)	98, 143, 175, 184, 235, 506, 549, 554, 603
MboI	GATC	9 cut(s)	96, 141, 173, 182, 233, 504, 547, 552, 601
MboII	GAAGA	3 cut(s)	151, 307, 310
MflI	RGATCY	5 cut(s)	96, 173, 182, 233, 504
MhlI	GDGCHC	2 cut(s)	58, 150
MlyI	GAGTC	4 cut(s)	310, 324, 504, 530
MmeI	TCCRAC	2 cut(s)	175, 478
MnlI	CCTC	5 cut(s)	107, 218, 221, 224, 358
MseI	TTAA	4 cut(s)	84, 393, 476, 607
MspI	CCGG	1 cut(s)	324
MvnI	CGCG	3 cut(s)	16, 446, 458
MwoI	GCNNNNNNNGC	5 cut(s)	17, 166, 431, 440, 467
NdeII	GATC	9 cut(s)	96, 141, 173, 182, 233, 504, 547, 552, 601
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	3 cut(s)	39, 352, 358
NspV	TTCGAA	2 cut(s)	293, 312
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 383
PfeI	GAWTC	3 cut(s)	22, 68, 91
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	445, 460
PleI	GAGTC	4 cut(s)	309, 324, 503, 530
PpsI	GAGTC	4 cut(s)	309, 324, 503, 530
Psp124BI	GAGCTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	78
PsuI	RGATCY	5 cut(s)	96, 173, 182, 233, 504
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	4 cut(s)	84, 393, 476, 607
SatI	GCNGC	2 cut(s)	444, 459
Sau3AI	GATC	9 cut(s)	96, 141, 173, 182, 233, 504, 547, 552, 601
SchI	GAGTC	4 cut(s)	310, 324, 504, 530
SduI	GDGCHC	2 cut(s)	58, 150
SetI	ASST	4 cut(s)	58, 118, 427, 436
SfaNI	GCATC	2 cut(s)	53, 443
SfuI	TTCGAA	2 cut(s)	293, 312
SsiI	CCGC	4 cut(s)	213, 350, 444, 458
SspMI	CTAG	3 cut(s)	60, 401, 585
SstI	GAGCTC	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	4 cut(s)	39, 358, 514, 567
TaqI	TCGA	3 cut(s)	25, 293, 312
TauI	GCSGC	2 cut(s)	446, 461
TfiI	GAWTC	3 cut(s)	22, 68, 91
Tru1I	TTAA	4 cut(s)	84, 393, 476, 607
Tru9I	TTAA	4 cut(s)	84, 393, 476, 607
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	3 cut(s)	39, 352, 358
Tsp45I	GTSAC	3 cut(s)	39, 352, 358
TspDTI	ATGAA	1 cut(s)	520
TspGWI	ACGGA	4 cut(s)	246, 290, 377, 517
TspRI	CASTG	1 cut(s)	519
Van91I	CCANNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	328
XspI	CTAG	3 cut(s)	60, 401, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.