Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016713

Physical Location & Seq

Genomic Coordinates Reverse (-)

36984038 .. 36984595

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1333400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGACGGCTGCGCGCGTTATTCGCTGCGAGCTGAGGAAGTTCCAAAGCCCCGCGGTCCGCGGCGTCGAACCGATTGCTCCGGTTCAGATTCCGAAACCGGCGGCTTCAGATCCGAAGAGCGCGAAGATCGTGCTTCAGCCTCGGCTCTGCACTCTGAGATCGTACGGCTCGGATCTGGTCAGGGTGATGAAGACGAAGGACGAAACGACGTCGCCGTTCTTCGCGACGCTGTCGGAGTACATCGAGAGCTCGAAGAAGAGCCAGGATTTCGAGATTCTGTCGGGTCGGCTGGCGATGGTGGTTTTCGCGGCGACGGTGTCGGTGGAGGTGGTGACTGGGAACTCGTTGTTTAGGAAAGTGGAGGTGGAGGGGATTGCGGAGGCGGCGGGGGTGTGTTTGGCTGCGGTGACGTGTGCGGCGGTTTGTGCATGGCTCACCAGTGCCCGAACCCGAGTGGGTCGGATCTTGAGTTTGAGCTGCAACACGTTAATTGACTCGCTCATTGACCAGATTGTGGATGGCTTATTTTACGATGATCCCACCGACCTTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009987 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051716 GO:0055035 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

186

Amino Acids

19.94

Weight (kDa)

7.53

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21970
fragaria_vesca	FvH4_1g22220
malus_domestica	MD15G1333400.v1.1
prunus_persica	Prupe.6G173300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0116361
rosa_laevigata	RLG00000018262
rosa_multiflora	Rmu_ssc0000108.1_g000004
rosa_roxburghii	Rroxscaffold_2G00127290
rosa_rugosa	Rorug02G0205900
rosa_samantha	Rh2AG261400 Rh2BG272800 Rh2CG267800 Rh2DG269600
rosa_wichuraiana	Rw2G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccII	CGCG	7 cut(s)	16, 18, 56, 63, 125, 227, 311
AclWI	GGATC	4 cut(s)	107, 183, 473, 533
AcuI	CTGAAG	2 cut(s)	93, 122
AcyI	GRCGYC	2 cut(s)	66, 212
AfaI	GTAC	2 cut(s)	167, 242
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflIII	ACRYGT	2 cut(s)	413, 486
AjiI	CACGTC	1 cut(s)	414
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	34, 252, 480
AluI	AGCT	3 cut(s)	34, 252, 480
Alw21I	GWGCWC	1 cut(s)	254
AlwI	GGATC	4 cut(s)	107, 183, 473, 533
Ama87I	CYCGRG	1 cut(s)	453
ApeKI	GCWGC	4 cut(s)	11, 27, 404, 480
AspLEI	GCGC	3 cut(s)	16, 18, 125
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	4 cut(s)	199, 346, 421, 430
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	14, 391, 467
BccI	CCATC	2 cut(s)	292, 515
BceAI	ACGGC	3 cut(s)	24, 184, 202
BcgI	CGANNNNNNTGC	4 cut(s)	59, 93, 115, 149
BciT130I	CCWGG	1 cut(s)	266
BisI	GCNGC	9 cut(s)	12, 28, 64, 105, 312, 387, 405, 420, 481
BlsI	GCNGC	9 cut(s)	13, 29, 65, 106, 313, 388, 406, 421, 482
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	453
BmgBI	CACGTC	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	490
BsaHI	GRCGYC	2 cut(s)	66, 212
BsaJI	CCNNGG	3 cut(s)	54, 61, 143
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	343, 441
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	54, 61, 143
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	26, 149
BseNI	ACTGG	2 cut(s)	343, 441
BsePI	GCGCGC	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	14, 391, 467
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	7 cut(s)	16, 18, 56, 63, 125, 227, 311
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	83, 101
BsiWI	CGTACG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	517
BsoBI	CYCGRG	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	254, 448
Bsp143I	GATC	6 cut(s)	112, 129, 161, 175, 465, 538
Bsp68I	TCGCGA	1 cut(s)	227
BspCNI	CTCAG	2 cut(s)	27, 150
BspFNI	CGCG	7 cut(s)	16, 18, 56, 63, 125, 227, 311
BspPI	GGATC	4 cut(s)	107, 183, 473, 533
BspQI	GCTCTTC	2 cut(s)	113, 254
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	343, 441
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	54, 61, 143
BssHII	GCGCGC	1 cut(s)	14
BssMI	GATC	6 cut(s)	112, 129, 161, 175, 465, 538
BssNI	GRCGYC	2 cut(s)	66, 212
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	2 cut(s)	113, 254
BstACI	GRCGYC	2 cut(s)	66, 212
BstC8I	GCNNGC	3 cut(s)	16, 32, 294
BstDEI	CTNAG	2 cut(s)	35, 158
BstDSI	CCRYGG	2 cut(s)	54, 61
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	7 cut(s)	16, 18, 56, 63, 125, 227, 311
BstHHI	GCGC	3 cut(s)	16, 18, 125
BstKTI	GATC	6 cut(s)	115, 132, 164, 178, 468, 541
BstMBI	GATC	6 cut(s)	112, 129, 161, 175, 465, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 24, 386, 428
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	7 cut(s)	16, 18, 56, 63, 125, 227, 311
BstV1I	GCAGC	3 cut(s)	14, 391, 467
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	3 cut(s)	112, 175, 465
BstYI	RGATCY	3 cut(s)	112, 175, 465
BtgI	CCRYGG	2 cut(s)	54, 61
BtgZI	GCGATG	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	448
BtuMI	TCGCGA	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	16, 32, 294
CfoI	GCGC	3 cut(s)	16, 18, 125
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	58
Cfr42I	CCGCGG	2 cut(s)	57, 64
CpoI	CGGWCCG	1 cut(s)	58
CseI	GACGC	2 cut(s)	55, 238
Csp6I	GTAC	2 cut(s)	166, 241
CspI	CGGWCCG	1 cut(s)	58
CviAII	CATG	1 cut(s)	432
CviQI	GTAC	2 cut(s)	166, 241
DdeI	CTNAG	2 cut(s)	35, 158
DpnI	GATC	6 cut(s)	114, 131, 163, 177, 467, 540
DpnII	GATC	6 cut(s)	112, 129, 161, 175, 465, 538
Eam1104I	CTCTTC	2 cut(s)	113, 254
EarI	CTCTTC	2 cut(s)	113, 254
Ecl136II	GAGCTC	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	2 cut(s)	93, 122
Eco88I	CYCGRG	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	1 cut(s)	435
FaiI	YATR	1 cut(s)	433
FatI	CATG	1 cut(s)	431
FauI	CCCGC	2 cut(s)	61, 382
Fnu4HI	GCNGC	9 cut(s)	12, 28, 64, 105, 312, 387, 405, 420, 481
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	9 cut(s)	12, 28, 64, 105, 312, 387, 405, 420, 481
GlaI	GCGC	3 cut(s)	15, 17, 124
GluI	GCNGC	9 cut(s)	12, 28, 64, 105, 312, 387, 405, 420, 481
HapII	CCGG	2 cut(s)	83, 101
HgaI	GACGC	2 cut(s)	55, 238
HhaI	GCGC	3 cut(s)	16, 18, 125
Hin1I	GRCGYC	2 cut(s)	66, 212
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	3 cut(s)	14, 16, 123
HinP1I	GCGC	3 cut(s)	14, 16, 123
HinfI	GANTC	3 cut(s)	91, 277, 497
HpaII	CCGG	2 cut(s)	83, 101
HphI	GGTGA	4 cut(s)	199, 346, 421, 430
Hpy188I	TCNGA	8 cut(s)	90, 96, 112, 117, 159, 175, 238, 465
Hpy188III	TCNNGA	4 cut(s)	226, 247, 274, 469
Hpy99I	CGWCG	6 cut(s)	10, 71, 214, 217, 232, 319
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	3 cut(s)	212, 413, 488
HpyCH4V	TGCA	3 cut(s)	153, 431, 483
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 24, 386, 428
HpyF3I	CTNAG	2 cut(s)	35, 158
HpySE526I	ACGT	3 cut(s)	212, 413, 488
Hsp92I	GRCGYC	2 cut(s)	66, 212
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	3 cut(s)	14, 16, 123
KspI	CCGCGG	2 cut(s)	57, 64
Kzo9I	GATC	6 cut(s)	112, 129, 161, 175, 465, 538
LguI	GCTCTTC	2 cut(s)	113, 254
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	3 cut(s)	14, 391, 467
MaeII	ACGT	3 cut(s)	212, 413, 488
MaeIII	GTNAC	2 cut(s)	334, 409
MalI	GATC	6 cut(s)	114, 131, 163, 177, 467, 540
MboI	GATC	6 cut(s)	112, 129, 161, 175, 465, 538
MboII	GAAGA	6 cut(s)	130, 139, 205, 214, 268, 271
MflI	RGATCY	3 cut(s)	112, 175, 465
MhlI	GDGCHC	2 cut(s)	254, 448
MluCI	AATT	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	216, 443
MnlI	CCTC	6 cut(s)	30, 153, 322, 358, 364, 376
MseI	TTAA	1 cut(s)	491
MspA1I	CMGCKG	2 cut(s)	56, 63
MspI	CCGG	2 cut(s)	83, 101
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	7 cut(s)	16, 18, 56, 63, 125, 227, 311
MwoI	GCNNNNNNNGC	4 cut(s)	11, 24, 386, 428
NdeII	GATC	6 cut(s)	112, 129, 161, 175, 465, 538
NlaIII	CATG	1 cut(s)	435
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	334, 409
NruI	TCGCGA	1 cut(s)	227
PauI	GCGCGC	1 cut(s)	14
PciSI	GCTCTTC	2 cut(s)	113, 254
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	91, 277
Pfl23II	CGTACG	1 cut(s)	165
PflFI	GACNNNGTC	2 cut(s)	232, 319
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	9 cut(s)	13, 29, 65, 106, 313, 388, 406, 421, 482
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspLI	CGTACG	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	3 cut(s)	112, 175, 465
PsyI	GACNNNGTC	2 cut(s)	232, 319
PteI	GCGCGC	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	227
RsaI	GTAC	2 cut(s)	167, 242
RsaNI	GTAC	2 cut(s)	166, 241
Rsr2I	CGGWCCG	1 cut(s)	58
RsrII	CGGWCCG	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	254
SacII	CCGCGG	2 cut(s)	57, 64
SapI	GCTCTTC	2 cut(s)	113, 254
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	9 cut(s)	12, 28, 64, 105, 312, 387, 405, 420, 481
Sau3AI	GATC	6 cut(s)	112, 129, 161, 175, 465, 538
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	254, 448
SetI	ASST	9 cut(s)	36, 215, 254, 333, 369, 416, 482, 491, 552
Sfr303I	CCGCGG	2 cut(s)	57, 64
SgrBI	CCGCGG	2 cut(s)	57, 64
SinI	GGWCC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	1 cut(s)	492
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	3 cut(s)	215, 416, 491
TaqI	TCGA	4 cut(s)	69, 246, 254, 273
TasI	AATT	1 cut(s)	492
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	5 cut(s)	66, 107, 314, 389, 422
TfiI	GAWTC	2 cut(s)	91, 277
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	2 cut(s)	334, 409
TseI	GCWGC	4 cut(s)	11, 27, 404, 480
Tsp45I	GTSAC	2 cut(s)	334, 409
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	1 cut(s)	448
Tth111I	GACNNNGTC	2 cut(s)	232, 319
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
ZraI	GACGTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.