Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000108.1

Orthogroup ID

OG0016713

Physical Location & Seq

Genomic Coordinates Reverse (-)

24244 .. 25069

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000108.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggccacggcggcgcgcgggattcgctgcgagctgaggaggttccagactcgggcggtccgcagcggaggagatcagcctctccctccggctcaggttccagttccgaaattgacgaagaacgcaaagatcgtgcttcagcctcggctatgcactctgagatcgtacggctcggatctcgtcagtgtaatgaaaacaagcaaagatggtagagctgtaggcgatgaagcgatgtcgtttttcgcaactctgtcggactacatcgacagctccaaaaagagccaggatttcgagatcgtctccggtcgtctggctatggtggtgtttgcggcgacggtgacgatggaggtggtgaccgggaactcgttgttcgggaaagtagggaaggaagggatagcggaagcggcgggggttggtttggctgcggtgacctgtgctgtggttgctgcttggatatccagtgctcgaacccgagtgggtcggatcttcactctgggatgtaactcgtttatagattcgctgattgatcaaatcgtcgacggcttgttctacgagaccgagattactgattggtctgacgacgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009987 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051716 GO:0055035 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

195

Amino Acids

20.89

Weight (kDa)

7.61

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21970
fragaria_vesca	FvH4_1g22220
malus_domestica	MD15G1333400.v1.1
prunus_persica	Prupe.6G173300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0116361
rosa_laevigata	RLG00000018262
rosa_multiflora	Rmu_ssc0000108.1_g000004
rosa_roxburghii	Rroxscaffold_2G00127290
rosa_rugosa	Rorug02G0205900
rosa_samantha	Rh2AG261400 Rh2BG272800 Rh2CG267800 Rh2DG269600
rosa_wichuraiana	Rw2G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	585
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	2 cut(s)	16, 18
AclWI	GGATC	2 cut(s)	183, 491
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	582
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	3 cut(s)	34, 215, 270
AluI	AGCT	3 cut(s)	34, 215, 270
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	304, 548
AlwI	GGATC	2 cut(s)	183, 491
Ama87I	CYCGRG	2 cut(s)	51, 471
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	27, 63, 422, 446
AspLEI	GCGC	2 cut(s)	16, 18
AspS9I	GGNCC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	3 cut(s)	349, 364, 439
AvaI	CYCGRG	2 cut(s)	51, 471
AvaII	GGWCC	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	4 cut(s)	14, 75, 409, 433
BccI	CCATC	2 cut(s)	200, 337
BceAI	ACGGC	3 cut(s)	24, 184, 556
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	526
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	304, 548
BfmI	CTRYAG	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	7 cut(s)	12, 28, 64, 330, 405, 423, 447
BlsI	GCNGC	7 cut(s)	13, 29, 65, 331, 406, 424, 448
Bme1390I	CCNGG	2 cut(s)	284, 358
Bme18I	GGWCC	1 cut(s)	58
BmeT110I	CYCGRG	2 cut(s)	51, 471
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	44, 99
BmrFI	CCNGG	2 cut(s)	284, 358
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
Bpu10I	CCTNAGC	2 cut(s)	35, 93
BpuMI	CCSGG	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	6, 143
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	101, 459
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	6, 143
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	3 cut(s)	26, 107, 149
BseNI	ACTGG	2 cut(s)	101, 459
BsePI	GCGCGC	1 cut(s)	14
BseRI	GAGGAG	2 cut(s)	52, 84
BseXI	GCAGC	4 cut(s)	14, 75, 409, 433
Bsh1236I	CGCG	2 cut(s)	16, 18
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	2 cut(s)	51, 471
BsiSI	CCGG	3 cut(s)	89, 303, 357
BsiWI	CGTACG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	304, 548
BsmBI	CGTCTC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	2 cut(s)	51, 471
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	7 cut(s)	73, 129, 161, 175, 294, 483, 526
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	27, 106, 150
BspFNI	CGCG	2 cut(s)	16, 18
BspLI	GGNNCC	2 cut(s)	44, 99
BspPI	GGATC	2 cut(s)	183, 491
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	2 cut(s)	101, 459
BssECI	CCNNGG	2 cut(s)	6, 143
BssHII	GCGCGC	1 cut(s)	14
BssMI	GATC	7 cut(s)	73, 129, 161, 175, 294, 483, 526
BssNI	GRCGYC	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	16, 32
BstDEI	CTNAG	3 cut(s)	35, 93, 158
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	2 cut(s)	352, 427
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	2 cut(s)	16, 18
BstHHI	GCGC	2 cut(s)	16, 18
BstKTI	GATC	7 cut(s)	76, 132, 164, 178, 297, 486, 529
BstMAI	GTCTC	2 cut(s)	304, 548
BstMBI	GATC	7 cut(s)	73, 129, 161, 175, 294, 483, 526
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 24, 404, 443
BstNI	CCWGG	1 cut(s)	284
BstPI	GGTNACC	2 cut(s)	352, 427
BstSCI	CCNGG	2 cut(s)	282, 356
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	2 cut(s)	16, 18
BstV1I	GCAGC	4 cut(s)	14, 75, 409, 433
BstX2I	RGATCY	2 cut(s)	175, 483
BstYI	RGATCY	2 cut(s)	175, 483
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	2 cut(s)	237, 245
BtsCI	GGATG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	190, 466
Cac8I	GCNNGC	2 cut(s)	16, 32
CfoI	GCGC	2 cut(s)	16, 18
Cfr13I	GGNCC	1 cut(s)	58
CpoI	CGGWCCG	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	166
CspI	CGGWCCG	1 cut(s)	58
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	3 cut(s)	35, 93, 158
DpnI	GATC	7 cut(s)	75, 131, 163, 177, 296, 485, 528
DpnII	GATC	7 cut(s)	73, 129, 161, 175, 294, 483, 526
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	548
Eco32I	GATATC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	2 cut(s)	51, 471
Eco91I	GGTNACC	2 cut(s)	352, 427
EcoO65I	GGTNACC	2 cut(s)	352, 427
EcoRII	CCWGG	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	304
FaiI	YATR	3 cut(s)	151, 317, 512
FauI	CCCGC	2 cut(s)	11, 400
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	7 cut(s)	12, 28, 64, 330, 405, 423, 447
FokI	GGATG	1 cut(s)	510
Fsp4HI	GCNGC	7 cut(s)	12, 28, 64, 330, 405, 423, 447
GlaI	GCGC	2 cut(s)	15, 17
GluI	GCNGC	7 cut(s)	12, 28, 64, 330, 405, 423, 447
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	89, 303, 357
HhaI	GCGC	2 cut(s)	16, 18
Hin1I	GRCGYC	1 cut(s)	582
Hin6I	GCGC	2 cut(s)	14, 16
HinP1I	GCGC	2 cut(s)	14, 16
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	3 cut(s)	22, 49, 515
HpaII	CCGG	3 cut(s)	89, 303, 357
HphI	GGTGA	3 cut(s)	349, 364, 439
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	7 cut(s)	108, 159, 175, 256, 483, 577, 587
Hpy188III	TCNNGA	3 cut(s)	46, 292, 373
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	4 cut(s)	337, 539, 542, 584
HpyAV	CCTTC	2 cut(s)	379, 383
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 24, 404, 443
HpyF3I	CTNAG	3 cut(s)	35, 93, 158
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	1 cut(s)	582
HspAI	GCGC	2 cut(s)	14, 16
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	7 cut(s)	73, 129, 161, 175, 294, 483, 526
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	4 cut(s)	14, 75, 409, 433
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	4 cut(s)	337, 352, 427, 500
MalI	GATC	7 cut(s)	75, 131, 163, 177, 296, 485, 528
MboI	GATC	7 cut(s)	73, 129, 161, 175, 294, 483, 526
MboII	GAAGA	2 cut(s)	130, 478
MflI	RGATCY	2 cut(s)	175, 483
MhlI	GDGCHC	1 cut(s)	466
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	234, 461
MnlI	CCTC	7 cut(s)	30, 33, 62, 90, 96, 153, 340
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	3 cut(s)	89, 303, 357
MspR9I	CCNGG	2 cut(s)	284, 358
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	2 cut(s)	16, 18
MwoI	GCNNNNNNNGC	4 cut(s)	11, 24, 404, 443
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	7 cut(s)	73, 129, 161, 175, 294, 483, 526
NlaIV	GGNNCC	2 cut(s)	44, 99
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	337, 352, 427
PauI	GCGCGC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	22, 515
Pfl23II	CGTACG	1 cut(s)	165
PflFI	GACNNNGTC	1 cut(s)	581
PkrI	GCNGC	7 cut(s)	13, 29, 65, 331, 406, 424, 448
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	282
PspEI	GGTNACC	2 cut(s)	352, 427
PspGI	CCWGG	1 cut(s)	282
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	44, 99
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	175, 483
PsyI	GACNNNGTC	1 cut(s)	581
PteI	GCGCGC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
Rsr2I	CGGWCCG	1 cut(s)	58
RsrII	CGGWCCG	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	536
SatI	GCNGC	7 cut(s)	12, 28, 64, 330, 405, 423, 447
Sau3AI	GATC	7 cut(s)	73, 129, 161, 175, 294, 483, 526
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	284, 358
SduI	GDGCHC	1 cut(s)	466
SetI	ASST	8 cut(s)	36, 44, 99, 217, 272, 351, 434, 585
SfcI	CTRYAG	1 cut(s)	216
SgrDI	CGTCGACG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	282, 356
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	4 cut(s)	264, 291, 466, 537
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	1 cut(s)	110
TauI	GCSGC	3 cut(s)	14, 332, 407
TfiI	GAWTC	2 cut(s)	22, 515
TscAI	CASTG	2 cut(s)	190, 466
TseFI	GTSAC	3 cut(s)	337, 352, 427
TseI	GCWGC	4 cut(s)	27, 63, 422, 446
Tsp45I	GTSAC	3 cut(s)	337, 352, 427
TspDTI	ATGAA	2 cut(s)	206, 240
TspRI	CASTG	2 cut(s)	190, 466
Tth111I	GACNNNGTC	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	537
ZraI	GACGTC	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.