Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016713

Physical Location & Seq

Genomic Coordinates Reverse (-)

17823850 .. 17824669

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCCACGGCGGCGCGCGCCATTCGCTGCGAGCTGCAGAGGCAGGAAAACCCGGCGGTTAGCAGGCGCGACCCGGCGGTTCCAGTTCAGGTACCGGTTCCGAAACCCGTGGCGCCGGAGCCGAAGACCGCGAAGATCGTGCTGCAGCCGCGGCTCTGTACTCTGAGATCGTACGGCTCAGATCTCGCCGGACTGATGAGGACGAAGAAGGACGACACGTCGCCGTTCTTTGCGGCGTTGTCGGAGTACATCGAGAGCTCGAAGAAGAGCCAAGACTTCGAGATCCTGTCGGGTCGGCTGGCCATGGTGATTTTCGCTGCGACGGTAGCGACGGAGGCGGTGACTGGAAACTCCTTGTTTGGGAAGGTGGAGGTGGAGGGGATCGCGGAGGCGGCGGGGGTGTGTTTGGCTGCTGTGGCTTGCGCGGCGGTCTCTGCTTGGCTATCCAGTAACCGGAAGAACGTGGGTCGGGTCTTGAGCTTAAGCTGTAACGGTTTAATAGATTCGTTGATTGATCAGATTGTGGATGGCTTGTTTTATGAGACTACAGACCTTAGCGATTGGTCTGATGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009987 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051716 GO:0055035 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

193

Amino Acids

20.53

Weight (kDa)

5.12

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21970
fragaria_vesca	FvH4_1g22220
malus_domestica	MD15G1333400.v1.1
prunus_persica	Prupe.6G173300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0116361
rosa_laevigata	RLG00000018262
rosa_multiflora	Rmu_ssc0000108.1_g000004
rosa_roxburghii	Rroxscaffold_2G00127290
rosa_rugosa	Rorug02G0205900
rosa_samantha	Rh2AG261400 Rh2BG272800 Rh2CG267800 Rh2DG269600
rosa_wichuraiana	Rw2G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	91
AccB1I	GGYRCC	2 cut(s)	91, 112
AccII	CGCG	7 cut(s)	16, 18, 69, 131, 151, 386, 425
AclWI	GGATC	2 cut(s)	277, 389
AcoI	YGGCCR	2 cut(s)	3, 300
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	4 cut(s)	93, 160, 173, 248
AfiI	CCNNNNNNNGG	2 cut(s)	360, 453
AflII	CTTAAG	1 cut(s)	481
AflIII	ACRYGT	1 cut(s)	216
AgeI	ACCGGT	1 cut(s)	94
AhdI	GACNNNNNGTC	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	219
AluBI	AGCT	4 cut(s)	34, 258, 480, 486
AluI	AGCT	4 cut(s)	34, 258, 480, 486
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	436, 536
AlwI	GGATC	2 cut(s)	277, 389
AoxI	GGCC	2 cut(s)	3, 300
ApeKI	GCWGC	6 cut(s)	27, 34, 142, 145, 317, 410
AsiGI	ACCGGT	1 cut(s)	94
Asp718I	GGTACC	1 cut(s)	91
AspLEI	GCGC	6 cut(s)	16, 18, 20, 69, 115, 425
AsuC2I	CCSGG	2 cut(s)	53, 74
AsuHPI	GGTGA	2 cut(s)	319, 352
BalI	TGGCCA	2 cut(s)	5, 302
BanI	GGYRCC	2 cut(s)	91, 112
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	6 cut(s)	14, 21, 129, 157, 304, 397
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	3 cut(s)	24, 190, 208
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	2 cut(s)	53, 74
BcoDI	GTCTC	2 cut(s)	436, 536
BfmI	CTRYAG	3 cut(s)	35, 143, 546
BfoI	RGCGCY	1 cut(s)	116
BfrI	CTTAAG	1 cut(s)	481
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	53, 74
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	219
BmiI	GGNNCC	5 cut(s)	81, 93, 99, 114, 120
BmrFI	CCNGG	2 cut(s)	53, 74
BpiI	GAAGAC	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	496
BpuMI	CCSGG	2 cut(s)	53, 74
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	4 cut(s)	6, 108, 149, 303
BsaWI	WCCGGW	2 cut(s)	94, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 453
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	3 cut(s)	83, 349, 447
BseDI	CCNNGG	4 cut(s)	6, 108, 149, 303
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	2 cut(s)	360, 453
BseMII	CTCAG	2 cut(s)	155, 192
BseNI	ACTGG	3 cut(s)	83, 349, 447
BsePI	GCGCGC	2 cut(s)	14, 16
BseXI	GCAGC	6 cut(s)	14, 21, 129, 157, 304, 397
Bsh1236I	CGCG	7 cut(s)	16, 18, 69, 131, 151, 386, 425
BshFI	GGCC	2 cut(s)	5, 302
BshNI	GGYRCC	2 cut(s)	91, 112
BshTI	ACCGGT	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	6 cut(s)	53, 74, 95, 116, 189, 454
BsiWI	CGTACG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	360, 453
BsmAI	GTCTC	2 cut(s)	436, 536
BsnI	GGCC	2 cut(s)	5, 302
Bso31I	GGTCTC	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	6 cut(s)	135, 167, 181, 282, 381, 514
Bsp19I	CCATGG	1 cut(s)	303
BspANI	GGCC	2 cut(s)	5, 302
BspCNI	CTCAG	2 cut(s)	156, 191
BspFNI	CGCG	7 cut(s)	16, 18, 69, 131, 151, 386, 425
BspLI	GGNNCC	5 cut(s)	81, 93, 99, 114, 120
BspMAI	CTGCAG	2 cut(s)	39, 147
BspPI	GGATC	2 cut(s)	277, 389
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	91, 112
BspTI	CTTAAG	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	83, 349, 447
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	4 cut(s)	6, 108, 149, 303
BssHII	GCGCGC	2 cut(s)	14, 16
BssMI	GATC	6 cut(s)	135, 167, 181, 282, 381, 514
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	325, 494
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	481
BstC8I	GCNNGC	6 cut(s)	16, 18, 32, 65, 300, 421
BstDEI	CTNAG	3 cut(s)	164, 178, 554
BstDSI	CCRYGG	4 cut(s)	6, 108, 149, 303
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	7 cut(s)	16, 18, 69, 131, 151, 386, 425
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	6 cut(s)	16, 18, 20, 69, 115, 425
BstKTI	GATC	6 cut(s)	138, 170, 184, 285, 384, 517
BstMAI	GTCTC	2 cut(s)	436, 536
BstMBI	GATC	6 cut(s)	135, 167, 181, 282, 381, 514
BstSCI	CCNGG	2 cut(s)	51, 72
BstSFI	CTRYAG	3 cut(s)	35, 143, 546
BstUI	CGCG	7 cut(s)	16, 18, 69, 131, 151, 386, 425
BstV1I	GCAGC	6 cut(s)	14, 21, 129, 157, 304, 397
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	181, 282
BstYI	RGATCY	2 cut(s)	181, 282
BsuRI	GGCC	2 cut(s)	5, 302
BtgI	CCRYGG	4 cut(s)	6, 108, 149, 303
BtrI	CACGTC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	6 cut(s)	16, 18, 32, 65, 300, 421
CfoI	GCGC	6 cut(s)	16, 18, 20, 69, 115, 425
Cfr10I	RCCGGY	1 cut(s)	94
Cfr42I	CCGCGG	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	92, 159, 172, 247
CspAI	ACCGGT	1 cut(s)	94
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	4 cut(s)	92, 159, 172, 247
DdeI	CTNAG	3 cut(s)	164, 178, 554
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	6 cut(s)	137, 169, 183, 284, 383, 516
DpnII	GATC	6 cut(s)	135, 167, 181, 282, 381, 514
DriI	GACNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	3, 300
Eam1104I	CTCTTC	1 cut(s)	260
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	307
FaiI	YATR	2 cut(s)	305, 540
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	514
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	260
GlaI	GCGC	6 cut(s)	15, 17, 19, 68, 114, 424
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	5, 302
HapII	CCGG	6 cut(s)	53, 74, 95, 116, 189, 454
HhaI	GCGC	6 cut(s)	16, 18, 20, 69, 115, 425
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	307
Hin6I	GCGC	6 cut(s)	14, 16, 18, 67, 113, 423
HinP1I	GCGC	6 cut(s)	14, 16, 18, 67, 113, 423
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	6 cut(s)	53, 74, 95, 116, 189, 454
HphI	GGTGA	2 cut(s)	319, 352
Hpy188I	TCNGA	6 cut(s)	102, 165, 181, 244, 519, 568
Hpy188III	TCNNGA	3 cut(s)	253, 280, 475
Hpy99I	CGWCG	3 cut(s)	223, 325, 334
HpyAV	CCTTC	2 cut(s)	202, 358
HpyCH4III	ACNGT	2 cut(s)	325, 494
HpyCH4IV	ACGT	2 cut(s)	218, 462
HpyCH4V	TGCA	2 cut(s)	37, 145
HpyF3I	CTNAG	3 cut(s)	164, 178, 554
HpySE526I	ACGT	2 cut(s)	218, 462
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	307
HspAI	GCGC	6 cut(s)	14, 16, 18, 67, 113, 423
KasI	GGCGCC	1 cut(s)	112
KpnI	GGTACC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	514
KspI	CCGCGG	1 cut(s)	152
Kzo9I	GATC	6 cut(s)	135, 167, 181, 282, 381, 514
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	6 cut(s)	14, 21, 129, 157, 304, 397
MaeII	ACGT	2 cut(s)	218, 462
MaeIII	GTNAC	3 cut(s)	340, 449, 488
MalI	GATC	6 cut(s)	137, 169, 183, 284, 383, 516
MboI	GATC	6 cut(s)	135, 167, 181, 282, 381, 514
MboII	GAAGA	6 cut(s)	136, 145, 217, 274, 277, 469
MflI	RGATCY	2 cut(s)	181, 282
MhlI	GDGCHC	1 cut(s)	260
MlsI	TGGCCA	2 cut(s)	5, 302
MluNI	TGGCCA	2 cut(s)	5, 302
Mly113I	GGCGCC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	33, 192, 328, 364, 370, 382, 565
Mox20I	TGGCCA	2 cut(s)	5, 302
MscI	TGGCCA	2 cut(s)	5, 302
MseI	TTAA	2 cut(s)	482, 497
Msp20I	TGGCCA	2 cut(s)	5, 302
MspA1I	CMGCKG	1 cut(s)	151
MspCI	CTTAAG	1 cut(s)	481
MspI	CCGG	6 cut(s)	53, 74, 95, 116, 189, 454
MspR9I	CCNGG	2 cut(s)	53, 74
MvnI	CGCG	7 cut(s)	16, 18, 69, 131, 151, 386, 425
NarI	GGCGCC	1 cut(s)	113
NciI	CCSGG	2 cut(s)	53, 74
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	6 cut(s)	135, 167, 181, 282, 381, 514
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	5 cut(s)	81, 93, 99, 114, 120
NmuCI	GTSAC	1 cut(s)	340
PauI	GCGCGC	2 cut(s)	14, 16
PciSI	GCTCTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	503
Pfl23II	CGTACG	1 cut(s)	171
PinAI	ACCGGT	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	260
PspLI	CGTACG	1 cut(s)	171
PspN4I	GGNNCC	5 cut(s)	81, 93, 99, 114, 120
PstI	CTGCAG	2 cut(s)	39, 147
PsuI	RGATCY	2 cut(s)	181, 282
PteI	GCGCGC	2 cut(s)	14, 16
RsaI	GTAC	4 cut(s)	93, 160, 173, 248
RsaNI	GTAC	4 cut(s)	92, 159, 172, 247
SacI	GAGCTC	1 cut(s)	260
SacII	CCGCGG	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	482, 497
Sau3AI	GATC	6 cut(s)	135, 167, 181, 282, 381, 514
ScrFI	CCNGG	2 cut(s)	53, 74
SduI	GDGCHC	1 cut(s)	260
SfcI	CTRYAG	3 cut(s)	35, 143, 546
SfoI	GGCGCC	1 cut(s)	114
Sfr303I	CCGCGG	1 cut(s)	152
SgrBI	CCGCGG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	475, 481
SmoI	CTYRAG	2 cut(s)	475, 481
SspDI	GGCGCC	1 cut(s)	112
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	51, 72
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	325, 494
TaiI	ACGT	2 cut(s)	221, 465
TaqI	TCGA	3 cut(s)	252, 260, 279
TatI	WGTACW	2 cut(s)	158, 246
TauI	GCSGC	6 cut(s)	14, 151, 154, 236, 395, 428
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	2 cut(s)	482, 497
Tru9I	TTAA	2 cut(s)	482, 497
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	6 cut(s)	27, 34, 142, 145, 317, 410
Tsp45I	GTSAC	1 cut(s)	340
TspGWI	ACGGA	1 cut(s)	347
Vha464I	CTTAAG	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.