Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016713

Physical Location & Seq

Genomic Coordinates Forward (+)

14143430 .. 14144144

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCCATGGCGGCGCGCGGGATTCGCTGCGAGCTGAGGAGGTTCCAGAATCCGGCGGTTCGCAGCGGAGGAGATCAACCTCTACCTCCGGCTCAGGTTACAGTTCCGAAACTGACCAAGAACGCGAAGATCATGCTTCAGCCTCGCCTATGCACTCTAAGATCATACGGGTCGGATGACTCGGATCTCGTCAGTGTAATGAAGACGAAGAAAGACGGTGGAGTTGTAGGCGATGAAGCTATGTCGTTTTTCGCGACTCTTTCCGACTACATCGACAGCTCCAAAAAGAGCCAGGACTTCGAAATCGTCTCCGGTCGTCTCGCCATGGTGGTGTTTGCGGCGACGGTGACGATGGAGGTGGTGACGGGGAACTCGTTGTTCGGGAAAGTAGAGACCAAAGGGATAGCCGAAGCGGCGGGGGTTGGTTTGGCAGCGGTGACGTGTGCAGTGGTTGCTGCTTGGATGACCAGTGCTCGAACCCGAGTGGGTCGGATCTTCACTCTGGGATGCAACTCGTTTATAGATTCGCTGATCGATCAGATCGTTGATGGATTATTCTACGAGACCGAGATTACTGATTGGTCTGACGACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009987 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051716 GO:0055035 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

199

Amino Acids

21.28

Weight (kDa)

5.25

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21970
fragaria_vesca	FvH4_1g22220
malus_domestica	MD15G1333400.v1.1
prunus_persica	Prupe.6G173300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0116361
rosa_laevigata	RLG00000018262
rosa_multiflora	Rmu_ssc0000108.1_g000004
rosa_roxburghii	Rroxscaffold_2G00127290
rosa_rugosa	Rorug02G0205900
rosa_samantha	Rh2AG261400 Rh2BG272800 Rh2CG267800 Rh2DG269600
rosa_wichuraiana	Rw2G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	594
AccII	CGCG	4 cut(s)	16, 18, 125, 254
AciI	CCGC	8 cut(s)	11, 18, 56, 66, 338, 413, 416, 434
AclWI	GGATC	2 cut(s)	192, 500
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	591
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	441
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	3 cut(s)	34, 239, 279
AluI	AGCT	3 cut(s)	34, 239, 279
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	4 cut(s)	313, 323, 386, 557
AlwI	GGATC	2 cut(s)	192, 500
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	27, 63, 431, 455
AspLEI	GCGC	2 cut(s)	16, 18
AsuHPI	GGTGA	3 cut(s)	358, 373, 448
AsuII	TTCGAA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	475
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	4 cut(s)	14, 75, 442, 443
BccI	CCATC	2 cut(s)	346, 542
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	4 cut(s)	313, 323, 386, 557
BglI	GCCNNNNNGGC	2 cut(s)	11, 413
BisI	GCNGC	7 cut(s)	12, 28, 64, 339, 414, 432, 456
BlsI	GCNGC	7 cut(s)	13, 29, 65, 340, 415, 433, 457
Bme1390I	CCNGG	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	480
BmgBI	CACGTC	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	209
Bpu10I	CCTNAGC	2 cut(s)	35, 93
Bpu14I	TTCGAA	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	591
BsaI	GGTCTC	2 cut(s)	386, 557
BsaJI	CCNNGG	2 cut(s)	6, 324
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	6, 324
BseGI	GGATG	3 cut(s)	181, 468, 512
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	26, 107
BseNI	ACTGG	1 cut(s)	468
BsePI	GCGCGC	1 cut(s)	14
BseRI	GAGGAG	2 cut(s)	52, 84
BseXI	GCAGC	4 cut(s)	14, 75, 442, 443
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	4 cut(s)	16, 18, 125, 254
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	534
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	3 cut(s)	53, 89, 312
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	4 cut(s)	313, 323, 386, 557
BsmBI	CGTCTC	2 cut(s)	313, 323
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	386, 557
BsoBI	CYCGRG	1 cut(s)	480
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	8 cut(s)	73, 129, 161, 184, 492, 531, 535, 540
Bsp19I	CCATGG	2 cut(s)	6, 324
Bsp68I	TCGCGA	1 cut(s)	254
BspACI	CCGC	8 cut(s)	11, 18, 56, 66, 338, 413, 416, 434
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	27, 106
BspDI	ATCGAT	1 cut(s)	534
BspFNI	CGCG	4 cut(s)	16, 18, 125, 254
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	192, 500
BspT104I	TTCGAA	1 cut(s)	300
BspTNI	GGTCTC	2 cut(s)	386, 557
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	2 cut(s)	6, 324
BssHII	GCGCGC	1 cut(s)	14
BssMI	GATC	8 cut(s)	73, 129, 161, 184, 492, 531, 535, 540
BssNI	GRCGYC	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	6, 324
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	3 cut(s)	103, 218, 346
BstACI	GRCGYC	1 cut(s)	591
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	16, 32
BstDEI	CTNAG	3 cut(s)	35, 93, 158
BstDSI	CCRYGG	2 cut(s)	6, 324
BstF5I	GGATG	3 cut(s)	181, 468, 512
BstFNI	CGCG	4 cut(s)	16, 18, 125, 254
BstHHI	GCGC	2 cut(s)	16, 18
BstKTI	GATC	8 cut(s)	76, 132, 164, 187, 495, 534, 538, 543
BstMAI	GTCTC	4 cut(s)	313, 323, 386, 557
BstMBI	GATC	8 cut(s)	73, 129, 161, 184, 492, 531, 535, 540
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 24, 413, 452
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstUI	CGCG	4 cut(s)	16, 18, 125, 254
BstV1I	GCAGC	4 cut(s)	14, 75, 442, 443
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	184, 492
BstYI	RGATCY	2 cut(s)	184, 492
Bsu15I	ATCGAT	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	534
BtgI	CCRYGG	2 cut(s)	6, 324
BtgZI	GCGATG	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	181, 468, 512
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	199, 453, 475
BtuMI	TCGCGA	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	16, 32
CfoI	GCGC	2 cut(s)	16, 18
ClaI	ATCGAT	1 cut(s)	534
CviAII	CATG	3 cut(s)	7, 133, 325
CviJI	RGCY	8 cut(s)	5, 34, 92, 142, 239, 279, 291, 407
CviKI_1	RGCY	8 cut(s)	5, 34, 92, 142, 239, 279, 291, 407
DdeI	CTNAG	3 cut(s)	35, 93, 158
DpnI	GATC	8 cut(s)	75, 131, 163, 186, 494, 533, 537, 542
DpnII	GATC	8 cut(s)	73, 129, 161, 184, 492, 531, 535, 540
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	6, 324
Eco31I	GGTCTC	2 cut(s)	386, 557
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	6, 324
ErhI	CCWWGG	2 cut(s)	6, 324
Esp3I	CGTCTC	2 cut(s)	313, 323
FaeI	CATG	3 cut(s)	10, 136, 328
FaiI	YATR	7 cut(s)	8, 134, 151, 166, 242, 326, 521
FatI	CATG	3 cut(s)	6, 132, 324
FauI	CCCGC	2 cut(s)	11, 409
Fnu4HI	GCNGC	7 cut(s)	12, 28, 64, 339, 414, 432, 456
FokI	GGATG	3 cut(s)	188, 475, 519
Fsp4HI	GCNGC	7 cut(s)	12, 28, 64, 339, 414, 432, 456
GlaI	GCGC	2 cut(s)	15, 17
GluI	GCNGC	7 cut(s)	12, 28, 64, 339, 414, 432, 456
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	53, 89, 312
HhaI	GCGC	2 cut(s)	16, 18
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	3 cut(s)	10, 136, 328
Hin6I	GCGC	2 cut(s)	14, 16
HinP1I	GCGC	2 cut(s)	14, 16
HinfI	GANTC	5 cut(s)	22, 49, 179, 256, 524
HpaII	CCGG	3 cut(s)	53, 89, 312
HphI	GGTGA	3 cut(s)	358, 373, 448
Hpy188I	TCNGA	8 cut(s)	108, 175, 184, 265, 492, 540, 586, 596
Hpy188III	TCNNGA	3 cut(s)	46, 253, 382
Hpy99I	CGWCG	2 cut(s)	346, 593
HpyCH4III	ACNGT	3 cut(s)	103, 218, 346
HpyCH4IV	ACGT	2 cut(s)	440, 591
HpyCH4V	TGCA	3 cut(s)	153, 446, 510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 24, 413, 452
HpyF3I	CTNAG	3 cut(s)	35, 93, 158
HpySE526I	ACGT	2 cut(s)	440, 591
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	3 cut(s)	10, 136, 328
HspAI	GCGC	2 cut(s)	14, 16
Kzo9I	GATC	8 cut(s)	73, 129, 161, 184, 492, 531, 535, 540
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	9 cut(s)	59, 66, 80, 102, 278, 305, 325, 481, 488
Lsp1109I	GCAGC	4 cut(s)	14, 75, 442, 443
LweI	GCATC	1 cut(s)	497
MaeII	ACGT	2 cut(s)	440, 591
MaeIII	GTNAC	4 cut(s)	97, 346, 361, 436
MalI	GATC	8 cut(s)	75, 131, 163, 186, 494, 533, 537, 542
MboI	GATC	8 cut(s)	73, 129, 161, 184, 492, 531, 535, 540
MboII	GAAGA	4 cut(s)	139, 214, 220, 487
MflI	RGATCY	2 cut(s)	184, 492
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	173, 250
MmeI	TCCRAC	3 cut(s)	153, 288, 470
MnlI	CCTC	7 cut(s)	30, 33, 62, 90, 96, 153, 349
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	329
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	66, 434
MspI	CCGG	3 cut(s)	53, 89, 312
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	4 cut(s)	16, 18, 125, 254
MwoI	GCNNNNNNNGC	4 cut(s)	11, 24, 413, 452
NcoI	CCATGG	2 cut(s)	6, 324
NdeII	GATC	8 cut(s)	73, 129, 161, 184, 492, 531, 535, 540
NlaIII	CATG	3 cut(s)	10, 136, 328
NlaIV	GGNNCC	1 cut(s)	44
NmuCI	GTSAC	3 cut(s)	346, 361, 436
NruI	TCGCGA	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	300
PauI	GCGCGC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	3 cut(s)	251, 371, 540
PfeI	GAWTC	3 cut(s)	22, 49, 524
PflFI	GACNNNGTC	1 cut(s)	590
PkrI	GCNGC	7 cut(s)	13, 29, 65, 340, 415, 433, 457
PleI	GAGTC	2 cut(s)	173, 250
PpsI	GAGTC	2 cut(s)	173, 250
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	184, 492
PsyI	GACNNNGTC	1 cut(s)	590
PteI	GCGCGC	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	329
SatI	GCNGC	7 cut(s)	12, 28, 64, 339, 414, 432, 456
Sau3AI	GATC	8 cut(s)	73, 129, 161, 184, 492, 531, 535, 540
SchI	GAGTC	2 cut(s)	173, 250
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	329
SsiI	CCGC	8 cut(s)	11, 18, 56, 66, 338, 413, 416, 434
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	2 cut(s)	6, 324
TaaI	ACNGT	3 cut(s)	103, 218, 346
TaiI	ACGT	2 cut(s)	443, 594
TaqI	TCGA	4 cut(s)	273, 300, 475, 534
TaqII	GACCGA	1 cut(s)	581
TauI	GCSGC	3 cut(s)	14, 341, 416
TfiI	GAWTC	3 cut(s)	22, 49, 524
TscAI	CASTG	3 cut(s)	199, 453, 475
TseFI	GTSAC	3 cut(s)	346, 361, 436
TseI	GCWGC	4 cut(s)	27, 63, 431, 455
Tsp45I	GTSAC	3 cut(s)	346, 361, 436
TspDTI	ATGAA	2 cut(s)	215, 249
TspRI	CASTG	3 cut(s)	199, 453, 475
Tth111I	GACNNNGTC	1 cut(s)	590
ZraI	GACGTC	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.