AT2G21990

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016130
Physical Location & Seq
Reverse (-)
9359318 .. 9360664
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21990.1

Sequence Viewer

Length: 759 bp
ATGGGGGAGCAAAGGGCAAGCGGTGCTTCCTCCTCCACCGACTCATATTCAACTCCTTCGCCGTCTGCGTCACCGTCTCCATCTCCGGCTCCACGTCAACATGTCACGTTACTCGAACCATCTCATCAACACAAGAAGAAAAGCAAAAAAGTCTTCCGAGTTTTTCGTTCGGTTTTCCGATCTTTCCCGATCATCACACCGGCAGCTTGCAAAATCCCGGTCCTCCCCGGCGGTAGCTTACCTGACCAGCACCGAAGCGGGTCAAGCGGATCAAGAGTTACCGGAACCTTATTCGGATACCGTAAAGGCCGTGTAAGCCTCTCGATTCAAGAAAGCCCTAGATGTTTACCATCTCTCGTCGTCGAGCTCGCAATGCAAACAATGGTGCTACAAAAAGAGCTTAGCGGAGGGATGGTTAGGATCGCGTTAGAGACAGAGAAACGAGGTGATAAAGAGAAGATCAAGATCATGGACGAGCCATTATGGACAATGTTTAGTAACGGTAAGAAAACGGGGTACGGTGTGAAACGTGACGCGACGGAGGAAGACCTCAACGTTATGGAGCTATTAAGACCGGTTTCGATGGGTGCCGGAGTTTTGCCAGGGAACACGGAGTTTGAAGGACCAGACTCGGAGATGGCTTACATGAGGGCTTACTTCGAACGAGTCGTTGGGTCTAAAGATTCAGAGACATTTTATATGTTGAGTCCCGAAGGAAATAATGGACCAGAACTTAGTATCTTCTTCGTAAGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

252

Amino Acids

27.64

Weight (kDa)

9.3

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 93 - 251 3.6e-68 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21990
fragaria_vesca FvH4_1g22210
malus_domestica MD12G1100400.v1.1
prunus_persica Prupe.6G173500_v2.0.a1
pyrus_communis pycom12g09880
rosa_chinensis RchiOBHm_Chr2g0116351
rosa_laevigata RLG00000018261
rosa_multiflora Rmu_sc0015281.1_g000003
rosa_roxburghii Rroxscaffold_2G00127300
rosa_rugosa Rorug02G0205800
rosa_samantha Rh2AG261300 Rh2BG272700 Rh2CG267700 Rh2DG269500
rosa_wichuraiana Rw2G020490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 587
AccII CGCG 2 cut(s) 425, 536
AciI CCGC 5 cut(s) 21, 231, 258, 267, 405
AclI AACGTT 1 cut(s) 555
AclWI GGATC 2 cut(s) 277, 428
AfaI GTAC 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 100
AgeI ACCGGT 1 cut(s) 574
AgsI TTSAA 3 cut(s) 51, 329, 620
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 206, 237, 367, 400, 565
AluI AGCT 5 cut(s) 206, 237, 367, 400, 565
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 3 cut(s) 81, 425, 683
AlwI GGATC 2 cut(s) 277, 428
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 203
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AsiGI ACCGGT 1 cut(s) 574
AspS9I GGNCC 3 cut(s) 220, 623, 725
AsuC2I CCSGG 2 cut(s) 218, 228
AsuHPI GGTGA 2 cut(s) 63, 458
AsuII TTCGAA 1 cut(s) 660
AvaII GGWCC 3 cut(s) 220, 623, 725
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 2 cut(s) 145, 552
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 215
BccI CCATC 6 cut(s) 88, 127, 358, 406, 577, 631
BceAI ACGGC 2 cut(s) 46, 294
BciT130I CCWGG 1 cut(s) 603
BciVI GTATCC 1 cut(s) 290
BcnI CCSGG 2 cut(s) 218, 228
BcoDI GTCTC 3 cut(s) 81, 425, 683
BfaI CTAG 1 cut(s) 339
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 1 cut(s) 204
BlpI GCTNAGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 3 cut(s) 218, 228, 603
Bme18I GGWCC 3 cut(s) 220, 623, 725
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 3 cut(s) 220, 623, 725
BmiI GGNNCC 3 cut(s) 90, 286, 589
BmrFI CCNGG 3 cut(s) 218, 228, 603
BpiI GAAGAC 2 cut(s) 145, 552
Bpu1102I GCTNAGC 1 cut(s) 401
Bpu14I TTCGAA 1 cut(s) 660
BpuMI CCSGG 2 cut(s) 218, 228
BsaBI GATNNNNATC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 226, 602
BsaWI WCCGGW 2 cut(s) 281, 574
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bse118I RCCGGY 2 cut(s) 199, 574
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 464
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 226, 602
BseGI GGATG 1 cut(s) 417
BseJI GATNNNNATC 1 cut(s) 464
BseMI GCAATG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 215
Bsh1236I CGCG 2 cut(s) 425, 536
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 587
BshTI ACCGGT 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 7 cut(s) 86, 200, 218, 228, 282, 575, 591
BslFI GGGAC 1 cut(s) 693
BsmAI GTCTC 3 cut(s) 81, 425, 683
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 693
BsnI GGCC 1 cut(s) 309
Bsp119I TTCGAA 1 cut(s) 660
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 6 cut(s) 179, 189, 269, 420, 459, 465
Bsp1720I GCTNAGC 1 cut(s) 401
BspACI CCGC 5 cut(s) 21, 231, 258, 267, 405
BspANI GGCC 1 cut(s) 309
BspFNI CGCG 2 cut(s) 425, 536
BspLI GGNNCC 3 cut(s) 90, 286, 589
BspPI GGATC 2 cut(s) 277, 428
BspT104I TTCGAA 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 2 cut(s) 199, 574
BssAI RCCGGY 2 cut(s) 199, 574
BssECI CCNNGG 2 cut(s) 226, 602
BssMI GATC 6 cut(s) 179, 189, 269, 420, 459, 465
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 4 cut(s) 75, 302, 503, 521
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 660
BstC8I GCNNGC 3 cut(s) 19, 208, 369
BstDEI CTNAG 2 cut(s) 401, 734
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 2 cut(s) 425, 536
BstKTI GATC 6 cut(s) 182, 192, 272, 423, 462, 468
BstMAI GTCTC 3 cut(s) 81, 425, 683
BstMBI GATC 6 cut(s) 179, 189, 269, 420, 459, 465
BstMWI GCNNNNNNNGC 4 cut(s) 23, 264, 315, 373
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 3 cut(s) 216, 226, 601
BstUI CGCG 2 cut(s) 425, 536
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 2 cut(s) 145, 552
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 309
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 417
Cac8I GCNNGC 3 cut(s) 19, 208, 369
Cfr10I RCCGGY 2 cut(s) 199, 574
Cfr13I GGNCC 3 cut(s) 220, 623, 725
CseI GACGC 2 cut(s) 57, 542
Csp6I GTAC 1 cut(s) 517
CspAI ACCGGT 1 cut(s) 574
CviAII CATG 3 cut(s) 101, 469, 646
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 2 cut(s) 401, 734
DpnI GATC 6 cut(s) 181, 191, 271, 422, 461, 467
DpnII GATC 6 cut(s) 179, 189, 269, 420, 459, 465
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 3 cut(s) 220, 623, 725
Eco53kI GAGCTC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 3 cut(s) 104, 472, 649
FaiI YATR 9 cut(s) 46, 102, 470, 484, 560, 647, 699, 701, 757
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 1 cut(s) 693
FatI CATG 3 cut(s) 100, 468, 645
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 339
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 1 cut(s) 309
HapII CCGG 7 cut(s) 86, 200, 218, 228, 282, 575, 591
HgaI GACGC 2 cut(s) 57, 542
Hin1II CATG 3 cut(s) 104, 472, 649
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HinfI GANTC 6 cut(s) 41, 325, 629, 666, 683, 706
HpaII CCGG 7 cut(s) 86, 200, 218, 228, 282, 575, 591
HphI GGTGA 2 cut(s) 63, 458
Hpy166II GTNNAC 2 cut(s) 98, 347
Hpy188I TCNGA 5 cut(s) 158, 179, 296, 634, 688
Hpy188III TCNNGA 6 cut(s) 187, 273, 322, 329, 463, 710
Hpy8I GTNNAC 2 cut(s) 98, 347
Hpy99I CGWCG 3 cut(s) 362, 365, 541
HpyAV CCTTC 3 cut(s) 66, 614, 707
HpyCH4III ACNGT 4 cut(s) 75, 302, 503, 521
HpyCH4IV ACGT 4 cut(s) 94, 107, 529, 555
HpyCH4V TGCA 2 cut(s) 210, 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 264, 315, 373
HpyF3I CTNAG 2 cut(s) 401, 734
HpySE526I ACGT 4 cut(s) 94, 107, 529, 555
Hsp92II CATG 3 cut(s) 104, 472, 649
Kzo9I GATC 6 cut(s) 179, 189, 269, 420, 459, 465
LmnI GCTCC 3 cut(s) 7, 94, 562
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 1 cut(s) 339
MaeII ACGT 4 cut(s) 94, 107, 529, 555
MaeIII GTNAC 6 cut(s) 69, 103, 108, 277, 497, 530
MalI GATC 6 cut(s) 181, 191, 271, 422, 461, 467
MboI GATC 6 cut(s) 179, 189, 269, 420, 459, 465
MboII GAAGA 6 cut(s) 145, 148, 469, 557, 733, 736
MhlI GDGCHC 1 cut(s) 369
MlyI GAGTC 4 cut(s) 35, 623, 675, 715
MnlI CCTC 9 cut(s) 40, 43, 233, 329, 401, 437, 535, 560, 642
MseI TTAA 1 cut(s) 569
MspI CCGG 7 cut(s) 86, 200, 218, 228, 282, 575, 591
MspR9I CCNGG 3 cut(s) 218, 228, 603
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 2 cut(s) 425, 536
MwoI GCNNNNNNNGC 4 cut(s) 23, 264, 315, 373
NciI CCSGG 2 cut(s) 218, 228
NdeII GATC 6 cut(s) 179, 189, 269, 420, 459, 465
NlaIII CATG 3 cut(s) 104, 472, 649
NlaIV GGNNCC 3 cut(s) 90, 286, 589
NmuCI GTSAC 3 cut(s) 69, 103, 530
NspI RCATGY 1 cut(s) 104
NspV TTCGAA 1 cut(s) 660
PciI ACATGT 1 cut(s) 100
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 666
PfeI GAWTC 2 cut(s) 325, 683
PinAI ACCGGT 1 cut(s) 574
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 4 cut(s) 35, 623, 674, 714
PpsI GAGTC 4 cut(s) 35, 623, 674, 714
PscI ACATGT 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 90, 286, 589
PspPI GGNCC 3 cut(s) 220, 623, 725
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 6 cut(s) 179, 189, 269, 420, 459, 465
Sau96I GGNCC 3 cut(s) 220, 623, 725
SchI GAGTC 4 cut(s) 35, 623, 675, 715
ScrFI CCNGG 3 cut(s) 218, 228, 603
SduI GDGCHC 1 cut(s) 369
SfuI TTCGAA 1 cut(s) 660
SinI GGWCC 3 cut(s) 220, 623, 725
SsiI CCGC 5 cut(s) 21, 231, 258, 267, 405
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 3 cut(s) 216, 226, 601
TaaI ACNGT 4 cut(s) 75, 302, 503, 521
TaiI ACGT 4 cut(s) 97, 110, 532, 558
TaqI TCGA 5 cut(s) 114, 323, 363, 581, 660
TfiI GAWTC 2 cut(s) 325, 683
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TseFI GTSAC 3 cut(s) 69, 103, 530
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 3 cut(s) 69, 103, 530
TspGWI ACGGA 2 cut(s) 554, 626
VpaK11BI GGWCC 3 cut(s) 220, 623, 725
XceI RCATGY 1 cut(s) 104
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.