FvH4_1g22210

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016130
Physical Location & Seq
Forward (+)
14141234 .. 14142655
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22210.t1

Sequence Viewer

Length: 792 bp
ATGGGGGAGCCAACAAAAGCTGTATCAAGAGAACAGCAGCGTCCGTCAGCAGTAGCAGCATCCTCCTCCTCCTCCTCCTCCACTCAGACCACCACAGTACCTCCGGCGCCACCGCCGCCACTTCCCAGTCCGATCTCAAACTCGACCCTCCTCCAGCCCTCCATTAAAAAGAAACACAAAACCAAAGTCTTCTGCGTCTTCAGATCCGTCCTCCGATCCTTCCCCATCATCACACCGACGGCATGCAAAATGCCGCACCTCCCCGGCGGCAGGCTTGACGCCAGCAGCACGGTTACTTCCGGTGTCCGAGTCAGCGGCACGCTGTTCGGGTACCGGAAGGGCCGGGTGTGCCTGTCGATACAGGAAAGCTCTAATACTCTCCCCAGCTTCATTGTGGAGCTAGCCATGCAAACCAACGTGCTGCAGAAGGAGATGAGCTCAGGGATGGTGAGAATCGCTCTCGAATGCGAGAAGAGAGGGGACAAAGACAAGACGAGGCTTATGGACGAGCCGGTATGGACTATGTTTTGCAATGGGAAGAAGACGGGTTATGCGGTTAAGAGGGAGGCTACGGAGGAGGACTTGAATGTCATGGAGCTGCTCAAGGCTGTGACTATGGGAGCGGGCGTGTTGCCCGGGAAGTCCGACGTCGAGGGCCCGGATGGCGAAATGGCGTACATGCGAGCCCTCTTCGAGCGGGTTGTAGGCTCGAAGGACTCCGAAACCTTGTATATGTTGAGTCCCGAAGGGAATAATGGCCCTGAGCTCAGTATTTTCTTTGTAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

264

Amino Acids

28.54

Weight (kDa)

9.19

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 104 - 262 2.9e-71 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21990
fragaria_vesca FvH4_1g22210
malus_domestica MD12G1100400.v1.1
prunus_persica Prupe.6G173500_v2.0.a1
pyrus_communis pycom12g09880
rosa_chinensis RchiOBHm_Chr2g0116351
rosa_laevigata RLG00000018261
rosa_multiflora Rmu_sc0015281.1_g000003
rosa_roxburghii Rroxscaffold_2G00127300
rosa_rugosa Rorug02G0205800
rosa_samantha Rh2AG261300 Rh2BG272700 Rh2CG267700 Rh2DG269500
rosa_wichuraiana Rw2G020490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
AatII GACGTC 1 cut(s) 651
Acc65I GGTACC 1 cut(s) 330
AccB1I GGYRCC 2 cut(s) 106, 330
AccBSI CCGCTC 2 cut(s) 623, 697
AciI CCGC 8 cut(s) 113, 116, 254, 267, 315, 554, 623, 697
AclWI GGATC 2 cut(s) 198, 210
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 3 cut(s) 107, 279, 648
AfaI GTAC 3 cut(s) 99, 332, 677
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 1 cut(s) 586
AluBI AGCT 7 cut(s) 20, 369, 387, 400, 438, 598, 766
AluI AGCT 7 cut(s) 20, 369, 387, 400, 438, 598, 766
Alw21I GWGCWC 2 cut(s) 440, 768
AlwI GGATC 2 cut(s) 198, 210
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 3 cut(s) 340, 655, 757
ApaI GGGCCC 1 cut(s) 659
ApeKI GCWGC 5 cut(s) 37, 56, 285, 421, 598
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
Asp718I GGTACC 1 cut(s) 330
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 4 cut(s) 340, 655, 656, 758
AsuC2I CCSGG 5 cut(s) 264, 344, 636, 637, 659
AsuHPI GGTGA 1 cut(s) 460
AsuNHI GCTAGC 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 659
BaeI ACNNNNGTAYC 2 cut(s) 81, 114
BanI GGYRCC 2 cut(s) 106, 330
BanII GRGCYC 4 cut(s) 440, 659, 688, 768
BbsI GAAGAC 3 cut(s) 181, 190, 548
Bbv12I GWGCWC 2 cut(s) 440, 768
BbvI GCAGC 5 cut(s) 49, 68, 297, 408, 585
BccI CCATC 3 cut(s) 233, 439, 656
BceAI ACGGC 1 cut(s) 255
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BcnI CCSGG 5 cut(s) 264, 344, 636, 637, 659
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 663
BisI GCNGC 9 cut(s) 38, 57, 116, 254, 268, 286, 316, 422, 599
BlsI GCNGC 9 cut(s) 39, 58, 117, 255, 269, 287, 317, 423, 600
Bme1390I CCNGG 5 cut(s) 264, 344, 636, 637, 659
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 4 cut(s) 340, 655, 656, 758
BmiI GGNNCC 4 cut(s) 9, 108, 332, 657
BmrFI CCNGG 5 cut(s) 264, 344, 636, 637, 659
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 68
BmtI GCTAGC 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 3 cut(s) 181, 190, 548
BplI GAGNNNNNCTC 4 cut(s) 422, 454, 442, 474
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 2 cut(s) 439, 762
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 5 cut(s) 264, 344, 636, 637, 659
BsaHI GRCGYC 3 cut(s) 107, 279, 648
BsaJI CCNNGG 2 cut(s) 262, 635
BsaWI WCCGGW 2 cut(s) 299, 333
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 538
BseDI CCNNGG 2 cut(s) 262, 635
BseGI GGATG 3 cut(s) 59, 450, 667
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 4 cut(s) 98, 453, 753, 781
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 7 cut(s) 55, 58, 61, 64, 67, 140, 590
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 5 cut(s) 49, 68, 297, 408, 585
BseYI CCCAGC 1 cut(s) 383
BshFI GGCC 3 cut(s) 342, 657, 759
BshNI GGYRCC 2 cut(s) 106, 330
BsiHKAI GWGCWC 2 cut(s) 440, 768
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 8 cut(s) 104, 264, 300, 334, 343, 512, 636, 659
BslFI GGGAC 2 cut(s) 494, 726
BslI CCNNNNNNNGG 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 494, 726
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 3 cut(s) 342, 657, 759
BsoBI CYCGRG 1 cut(s) 635
Bsp120I GGGCCC 1 cut(s) 655
Bsp1286I GDGCHC 4 cut(s) 440, 659, 688, 768
Bsp143I GATC 3 cut(s) 132, 203, 215
BspACI CCGC 8 cut(s) 113, 116, 254, 267, 315, 554, 623, 697
BspANI GGCC 3 cut(s) 342, 657, 759
BspCNI CTCAG 4 cut(s) 97, 452, 754, 780
BspLI GGNNCC 4 cut(s) 9, 108, 332, 657
BspMAI CTGCAG 1 cut(s) 426
BspOI GCTAGC 1 cut(s) 404
BspPI GGATC 2 cut(s) 198, 210
BspT107I GGYRCC 2 cut(s) 106, 330
BsrBI CCGCTC 2 cut(s) 623, 697
BsrDI GCAATG 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 511
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 2 cut(s) 262, 635
BssMI GATC 3 cut(s) 132, 203, 215
BssNI GRCGYC 3 cut(s) 107, 279, 648
Bst4CI ACNGT 2 cut(s) 97, 292
Bst6I CTCTTC 2 cut(s) 467, 695
BstACI GRCGYC 3 cut(s) 107, 279, 648
BstC8I GCNNGC 7 cut(s) 244, 272, 283, 320, 402, 625, 684
BstDEI CTNAG 4 cut(s) 84, 439, 762, 767
BstF5I GGATG 3 cut(s) 59, 450, 667
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 3 cut(s) 135, 206, 218
BstMBI GATC 3 cut(s) 132, 203, 215
BstMWI GCNNNNNNNGC 5 cut(s) 56, 115, 348, 406, 663
BstNSI RCATGY 2 cut(s) 246, 682
BstSCI CCNGG 5 cut(s) 262, 342, 634, 635, 657
BstSFI CTRYAG 1 cut(s) 422
BstSLI GKGCMC 1 cut(s) 659
BstV1I GCAGC 5 cut(s) 49, 68, 297, 408, 585
BstV2I GAAGAC 3 cut(s) 181, 190, 548
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 3 cut(s) 342, 657, 759
BtsCI GGATG 3 cut(s) 59, 450, 667
Cac8I GCNNGC 7 cut(s) 244, 272, 283, 320, 402, 625, 684
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 4 cut(s) 340, 655, 656, 758
Cfr9I CCCGGG 1 cut(s) 635
CseI GACGC 3 cut(s) 29, 184, 287
Csp6I GTAC 3 cut(s) 98, 331, 676
CviAII CATG 4 cut(s) 243, 406, 592, 679
CviQI GTAC 3 cut(s) 98, 331, 676
DdeI CTNAG 4 cut(s) 84, 439, 762, 767
DinI GGCGCC 1 cut(s) 108
DpnI GATC 3 cut(s) 134, 205, 217
DpnII GATC 3 cut(s) 132, 203, 215
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
Eam1104I CTCTTC 2 cut(s) 467, 695
EarI CTCTTC 2 cut(s) 467, 695
Ecl136II GAGCTC 2 cut(s) 438, 766
Eco24I GRGCYC 4 cut(s) 440, 659, 688, 768
Eco53kI GAGCTC 2 cut(s) 438, 766
Eco57I CTGAAG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 635
EcoICRI GAGCTC 2 cut(s) 438, 766
EcoO109I RGGNCCY 1 cut(s) 655
EcoT38I GRGCYC 4 cut(s) 440, 659, 688, 768
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
FaeI CATG 4 cut(s) 246, 409, 595, 682
FaqI GGGAC 2 cut(s) 494, 726
FatI CATG 4 cut(s) 242, 405, 591, 678
FauI CCCGC 2 cut(s) 616, 690
Fnu4HI GCNGC 9 cut(s) 38, 57, 116, 254, 268, 286, 316, 422, 599
FokI GGATG 3 cut(s) 46, 457, 674
FriOI GRGCYC 4 cut(s) 440, 659, 688, 768
Fsp4HI GCNGC 9 cut(s) 38, 57, 116, 254, 268, 286, 316, 422, 599
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 108
GluI GCNGC 9 cut(s) 38, 57, 116, 254, 268, 286, 316, 422, 599
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 3 cut(s) 342, 657, 759
HapII CCGG 8 cut(s) 104, 264, 300, 334, 343, 512, 636, 659
HgaI GACGC 3 cut(s) 29, 184, 287
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 3 cut(s) 107, 279, 648
Hin1II CATG 4 cut(s) 246, 409, 595, 682
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 4 cut(s) 309, 453, 716, 739
HpaII CCGG 8 cut(s) 104, 264, 300, 334, 343, 512, 636, 659
HphI GGTGA 1 cut(s) 460
Hpy188I TCNGA 7 cut(s) 87, 132, 203, 215, 308, 646, 721
Hpy188III TCNNGA 3 cut(s) 27, 461, 743
Hpy99I CGWCG 3 cut(s) 241, 650, 653
HpyAV CCTTC 5 cut(s) 229, 331, 421, 706, 740
HpyCH4III ACNGT 2 cut(s) 97, 292
HpyCH4IV ACGT 2 cut(s) 417, 648
HpyCH4V TGCA 4 cut(s) 246, 409, 424, 531
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 115, 348, 406, 663
HpyF3I CTNAG 4 cut(s) 84, 439, 762, 767
HpySE526I ACGT 2 cut(s) 417, 648
Hsp92I GRCGYC 3 cut(s) 107, 279, 648
Hsp92II CATG 4 cut(s) 246, 409, 595, 682
HspAI GCGC 1 cut(s) 107
KasI GGCGCC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 334
Kzo9I GATC 3 cut(s) 132, 203, 215
LmnI GCTCC 4 cut(s) 7, 397, 595, 620
Lsp1109I GCAGC 5 cut(s) 49, 68, 297, 408, 585
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 401
MaeII ACGT 2 cut(s) 417, 648
MaeIII GTNAC 2 cut(s) 292, 610
MalI GATC 3 cut(s) 134, 205, 217
MbiI CCGCTC 2 cut(s) 623, 697
MboI GATC 3 cut(s) 132, 203, 215
MboII GAAGA 6 cut(s) 181, 190, 484, 550, 553, 682
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 4 cut(s) 440, 659, 688, 768
Mly113I GGCGCC 1 cut(s) 107
MlyI GAGTC 3 cut(s) 318, 710, 748
MmeI TCCRAC 1 cut(s) 669
MseI TTAA 2 cut(s) 165, 558
MspA1I CMGCKG 1 cut(s) 315
MspI CCGG 8 cut(s) 104, 264, 300, 334, 343, 512, 636, 659
MspR9I CCNGG 5 cut(s) 264, 344, 636, 637, 659
Mva1269I GAATGC 1 cut(s) 470
MwoI GCNNNNNNNGC 5 cut(s) 56, 115, 348, 406, 663
NarI GGCGCC 1 cut(s) 107
NciI CCSGG 5 cut(s) 264, 344, 636, 637, 659
NdeII GATC 3 cut(s) 132, 203, 215
NheI GCTAGC 1 cut(s) 400
NlaIII CATG 4 cut(s) 246, 409, 595, 682
NlaIV GGNNCC 4 cut(s) 9, 108, 332, 657
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 2 cut(s) 246, 682
PaeI GCATGC 1 cut(s) 246
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 1 cut(s) 453
PkrI GCNGC 9 cut(s) 39, 58, 117, 255, 269, 287, 317, 423, 600
PleI GAGTC 3 cut(s) 317, 710, 747
PluTI GGCGCC 1 cut(s) 110
PpsI GAGTC 3 cut(s) 317, 710, 747
Psp124BI GAGCTC 2 cut(s) 440, 768
PspFI CCCAGC 1 cut(s) 383
PspN4I GGNNCC 4 cut(s) 9, 108, 332, 657
PspOMI GGGCCC 1 cut(s) 655
PspPI GGNCC 4 cut(s) 340, 655, 656, 758
PstI CTGCAG 1 cut(s) 426
PsuI RGATCY 1 cut(s) 203
RsaI GTAC 3 cut(s) 99, 332, 677
RsaNI GTAC 3 cut(s) 98, 331, 676
SacI GAGCTC 2 cut(s) 440, 768
SaqAI TTAA 2 cut(s) 165, 558
SatI GCNGC 9 cut(s) 38, 57, 116, 254, 268, 286, 316, 422, 599
Sau3AI GATC 3 cut(s) 132, 203, 215
Sau96I GGNCC 4 cut(s) 340, 655, 656, 758
SchI GAGTC 3 cut(s) 318, 710, 748
ScrFI CCNGG 5 cut(s) 264, 344, 636, 637, 659
SduI GDGCHC 4 cut(s) 440, 659, 688, 768
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 422
SfoI GGCGCC 1 cut(s) 108
SmaI CCCGGG 1 cut(s) 637
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SphI GCATGC 1 cut(s) 246
SsiI CCGC 8 cut(s) 113, 116, 254, 267, 315, 554, 623, 697
SspDI GGCGCC 1 cut(s) 106
SspMI CTAG 1 cut(s) 401
SstI GAGCTC 2 cut(s) 440, 768
StyD4I CCNGG 5 cut(s) 262, 342, 634, 635, 657
TaaI ACNGT 2 cut(s) 97, 292
TaiI ACGT 2 cut(s) 420, 651
TaqI TCGA 6 cut(s) 143, 356, 462, 651, 693, 710
TauI GCSGC 4 cut(s) 118, 256, 270, 318
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 2 cut(s) 165, 558
Tru9I TTAA 2 cut(s) 165, 558
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 5 cut(s) 37, 56, 285, 421, 598
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 1 cut(s) 379
TspGWI ACGGA 3 cut(s) 33, 196, 587
TspMI CCCGGG 1 cut(s) 635
XceI RCATGY 2 cut(s) 246, 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmaI CCCGGG 1 cut(s) 635
XspI CTAG 1 cut(s) 401
ZraI GACGTC 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.