AT2G22240

synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
9451605 .. 9454300
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22240.3

Sequence Viewer

Length: 1533 bp
ATGTTCATCGAGAGCTTCAAAGTAGAGAGTCCAAATGTCAAATACACAGAGAATGAGATCAATTCGGTGTACGATTACGAAACAACAGAGGTCGTCCACGAGAATCGTAACGGTACATATCAATGGGTCGTGAAGCCAAAGACTGTCAAATACGATTTCAAAACAGACACTCGTGTCCCCAAATTAGGGGTTATGCTTGTTGGTTGGGGAGGAAACAATGGATCAACACTAACCGCTGGTGTCATTGCTAACAAAGAAGGAATATCGTGGGCGACTAAAGACAAAGTGCAACAAGCTAATTACTTTGGTTCACTTACTCAAGCTTCATCGATTCGTGTTGGCTCTTACAATGGTGAAGAGATCTATGCTCCTTTCAAGAGTCTTCTTCCAATGGTGAATCCAGAGGATGTTGTGTTTGGTGGTTGGGATATAAGTGACATGAATTTAGCAGACGCTATGGCTAGAGCTAGAGTTCTTGATATTGATCTGCAGAAACAACTTAGACCTTACATGGAGAACATGATCCCACTTCCTGGTATCTATGACCCTGATTTCATCGCTGCTAATCAAGGTTCACGTGCTAATAGCGTGATCAAAGGTACCAAGAAGGAACAAGTTGATCACATCATCAAGGACATGAGGGAGTTTAAGGAGAAGAACAAAGTGGATAAGTTGGTTGTGTTATGGACTGCAAACACAGAGCGTTATAGCAATGTGATTGTAGGACTTAACGATACGACGGAGAATCTATTGGCTTCTGTTGAAAAGGACGAGTCTGAGATCTCGCCGTCTACGTTGTATGCGATTGCTTGTGTTCTTGAAGGCATTCCTTTCATCAATGGGAGTCCTCAGAATACTTTTGTCCCCGGTCTTATCGAATTGGCTATATCGAAGAATTGTTTGATTGGTGGGGATGATTTCAAGAGTGGTCAGACTAAGATGAAATCCGTTTTGGTTGATTTCCTTGTTGGAGCTGGCATTAAGCCTACTTCGATTGTGAGCTATAATCATTTGGGAAACAACGACGGGATGAACCTCTCAGCGCCACAGACTTTCCGCTCTAAGGAGATTTCAAAGAGCAATGTTGTAGACGACATGGTAGCTAGTAATGGCATCCTCTTTGAGCCTGGTGAACACCCTGACCATGTCGTTGTCATCAAGTATGTGCCATATGTTGCGGATAGTAAAAGAGCAATGGATGAGTACACGTCTGAGATATTCATGGGAGGGAGGAACACTATAGTGTTGCATAACACTTGTGAGGACTCTCTCTTGGCTGCACCAATTATCTTGGATCTTGTCCTTCTCGCTGAACTCAGCACCAGAATCCAATTTAAAGCTGAAGGAGAGGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCCGGAACACCGGTGGTTAACGCTCTGTCGAAGCAGCGGGCAATGCTGGAAAACATTCTTAGGGCATGTGTTGGGCTTGCGCCAGAGAACAACATGATCATGGAGTACAAGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

56.34

Weight (kDa)

5.32

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_5 PF07994 62 - 447 5.5e-124 Myo-inositol-1-phosphate synthase
Inos-1-P_synth PF01658 310 - 423 3.1e-36 Myo-inositol-1-phosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010908)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 599
AccB1I GGYRCC 2 cut(s) 599, 1405
AccB7I CCANNNNNTGG 1 cut(s) 533
AccBSI CCGCTC 1 cut(s) 1059
AccI GTMKAC 2 cut(s) 791, 1089
AciI CCGC 5 cut(s) 234, 1057, 1178, 1418, 1456
AclWI GGATC 3 cut(s) 229, 517, 1302
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 1362
AcvI CACGTG 1 cut(s) 578
AfaI GTAC 6 cut(s) 71, 115, 601, 1205, 1416, 1526
AfiI CCNNNNNNNGG 5 cut(s) 185, 186, 533, 1063, 1402
AflIII ACRYGT 1 cut(s) 1206
AgeI ACCGGT 1 cut(s) 1429
AgsI TTSAA 7 cut(s) 19, 160, 376, 764, 821, 922, 1074
AjiI CACGTC 1 cut(s) 1209
AjnI CCWGG 2 cut(s) 532, 1126
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AleI CACNNNNGTG 1 cut(s) 1241
AluBI AGCT 9 cut(s) 15, 296, 323, 467, 974, 1002, 1103, 1340, 1379
AluI AGCT 9 cut(s) 15, 296, 323, 467, 974, 1002, 1103, 1340, 1379
AlwI GGATC 3 cut(s) 229, 517, 1302
ApeKI GCWGC 3 cut(s) 560, 1277, 1453
ApoI RAATTY 1 cut(s) 442
AsiGI ACCGGT 1 cut(s) 1429
Asp700I GAANNNNTTC 2 cut(s) 825, 1473
Asp718I GGTACC 1 cut(s) 599
AspLEI GCGC 2 cut(s) 1045, 1501
AsuC2I CCSGG 3 cut(s) 867, 1373, 1422
AsuHPI GGTGA 3 cut(s) 365, 406, 1142
BanI GGYRCC 2 cut(s) 599, 1405
BauI CACGAG 2 cut(s) 98, 171
BbrPI CACGTG 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 3 cut(s) 547, 1264, 1465
BceAI ACGGC 1 cut(s) 772
BciT130I CCWGG 2 cut(s) 534, 1128
BclI TGATCA 3 cut(s) 591, 619, 1515
BcnI CCSGG 3 cut(s) 867, 1373, 1422
BfaI CTAG 3 cut(s) 462, 468, 1104
BfmI CTRYAG 2 cut(s) 488, 1239
BfoI RGCGCY 1 cut(s) 1046
BglII AGATCT 2 cut(s) 360, 780
BisI GCNGC 3 cut(s) 561, 1278, 1454
BlsI GCNGC 3 cut(s) 562, 1279, 1455
Bme1390I CCNGG 5 cut(s) 534, 867, 1128, 1373, 1422
BmgBI CACGTC 1 cut(s) 1209
BmiI GGNNCC 2 cut(s) 601, 1407
BmrFI CCNGG 5 cut(s) 534, 867, 1128, 1373, 1422
BmsI GCATC 1 cut(s) 1122
BpiI GAAGAC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 303
BpuMI CCSGG 3 cut(s) 867, 1373, 1422
Bsa29I ATCGAT 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 865
BsaWI WCCGGW 1 cut(s) 1429
BsaXI ACNNNNNCTCC 1 cut(s) 1514
Bsc4I CCNNNNNNNGG 5 cut(s) 185, 186, 533, 1063, 1402
Bse118I RCCGGY 1 cut(s) 1429
Bse3DI GCAATG 5 cut(s) 243, 718, 1087, 1200, 1467
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 534, 1128
BseCI ATCGAT 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 865
BseGI GGATG 5 cut(s) 412, 919, 1035, 1113, 1204
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 5 cut(s) 185, 186, 533, 1063, 1402
BseMI GCAATG 5 cut(s) 243, 718, 1087, 1200, 1467
BseMII CTCAG 6 cut(s) 768, 863, 1053, 1203, 1330, 1402
BseXI GCAGC 3 cut(s) 547, 1264, 1465
BsgI GTGCAG 1 cut(s) 1263
BshNI GGYRCC 2 cut(s) 599, 1405
BshTI ACCGGT 1 cut(s) 1429
BshVI ATCGAT 1 cut(s) 329
BsiSI CCGG 4 cut(s) 867, 1373, 1422, 1430
BslFI GGGAC 2 cut(s) 161, 848
BslI CCNNNNNNNGG 5 cut(s) 185, 186, 533, 1063, 1402
BsmFI GGGAC 2 cut(s) 161, 848
BsmI GAATGC 1 cut(s) 825
BspACI CCGC 5 cut(s) 234, 1057, 1178, 1418, 1456
BspCNI CTCAG 6 cut(s) 769, 862, 1052, 1204, 1329, 1401
BspDI ATCGAT 1 cut(s) 329
BspLI GGNNCC 2 cut(s) 601, 1407
BspMAI CTGCAG 1 cut(s) 492
BspPI GGATC 3 cut(s) 229, 517, 1302
BspT107I GGYRCC 2 cut(s) 599, 1405
BsrBI CCGCTC 1 cut(s) 1059
BsrDI GCAATG 5 cut(s) 243, 718, 1087, 1200, 1467
BsrFI RCCGGY 1 cut(s) 1429
BssAI RCCGGY 1 cut(s) 1429
BssECI CCNNGG 1 cut(s) 865
BssSI CACGAG 2 cut(s) 98, 171
Bst2BI CACGAG 2 cut(s) 98, 171
Bst2UI CCWGG 2 cut(s) 534, 1128
Bst4CI ACNGT 2 cut(s) 113, 145
Bst6I CTCTTC 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 578
BstC8I GCNNGC 3 cut(s) 976, 1458, 1497
BstENI CCTNNNNNAGG 1 cut(s) 1400
BstF5I GGATG 5 cut(s) 412, 919, 1035, 1113, 1204
BstH2I RGCGCY 1 cut(s) 1046
BstHHI GCGC 2 cut(s) 1045, 1501
BstMWI GCNNNNNNNGC 1 cut(s) 1462
BstNI CCWGG 2 cut(s) 534, 1128
BstNSI RCATGY 1 cut(s) 1488
BstSCI CCNGG 5 cut(s) 532, 865, 1126, 1371, 1420
BstSFI CTRYAG 2 cut(s) 488, 1239
BstV1I GCAGC 3 cut(s) 547, 1264, 1465
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 3 cut(s) 360, 780, 1294
BstYI RGATCY 3 cut(s) 360, 780, 1294
Bsu15I ATCGAT 1 cut(s) 329
BsuTUI ATCGAT 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 541
BtrI CACGTC 1 cut(s) 1209
BtsCI GGATG 5 cut(s) 412, 919, 1035, 1113, 1204
Cac8I GCNNGC 3 cut(s) 976, 1458, 1497
CfoI GCGC 2 cut(s) 1045, 1501
Cfr10I RCCGGY 1 cut(s) 1429
ClaI ATCGAT 1 cut(s) 329
CseI GACGC 1 cut(s) 461
Csp6I GTAC 6 cut(s) 70, 114, 600, 1204, 1415, 1525
CspAI ACCGGT 1 cut(s) 1429
CviQI GTAC 6 cut(s) 70, 114, 600, 1204, 1415, 1525
DraI TTTAAA 1 cut(s) 1336
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 1362
Eco72I CACGTG 1 cut(s) 578
EcoNI CCTNNNNNAGG 1 cut(s) 1400
EcoRII CCWGG 2 cut(s) 532, 1126
FaqI GGGAC 2 cut(s) 161, 848
FauI CCCGC 1 cut(s) 1449
FauNDI CATATG 1 cut(s) 1171
FbaI TGATCA 3 cut(s) 591, 619, 1515
FblI GTMKAC 2 cut(s) 791, 1089
Fnu4HI GCNGC 3 cut(s) 561, 1278, 1454
FokI GGATG 5 cut(s) 419, 926, 1042, 1100, 1211
Fsp4HI GCNGC 3 cut(s) 561, 1278, 1454
FspBI CTAG 3 cut(s) 462, 468, 1104
GlaI GCGC 2 cut(s) 1044, 1500
GluI GCNGC 3 cut(s) 561, 1278, 1454
HaeII RGCGCY 1 cut(s) 1046
HapII CCGG 4 cut(s) 867, 1373, 1422, 1430
HgaI GACGC 1 cut(s) 461
HhaI GCGC 2 cut(s) 1045, 1501
Hin6I GCGC 2 cut(s) 1043, 1499
HinP1I GCGC 2 cut(s) 1043, 1499
HincII GTYRAC 1 cut(s) 1438
HindII GTYRAC 1 cut(s) 1438
HindIII AAGCTT 1 cut(s) 321
HpaI GTTAAC 1 cut(s) 1438
HpaII CCGG 4 cut(s) 867, 1373, 1422, 1430
HphI GGTGA 3 cut(s) 365, 406, 1142
Hpy166II GTNNAC 9 cut(s) 70, 97, 311, 575, 792, 1090, 1133, 1206, 1438
Hpy188I TCNGA 4 cut(s) 778, 852, 933, 1213
Hpy188III TCNNGA 7 cut(s) 10, 130, 376, 401, 476, 818, 922
Hpy8I GTNNAC 9 cut(s) 70, 97, 311, 575, 792, 1090, 1133, 1206, 1438
Hpy99I CGWCG 2 cut(s) 742, 1028
HpyAV CCTTC 5 cut(s) 251, 601, 815, 1313, 1337
HpyCH4III ACNGT 2 cut(s) 113, 145
HpyCH4IV ACGT 3 cut(s) 577, 794, 1208
HpyCH4V TGCA 5 cut(s) 289, 490, 692, 1249, 1280
HpyF10VI GCNNNNNNNGC 1 cut(s) 1462
HpySE526I ACGT 3 cut(s) 577, 794, 1208
HspAI GCGC 2 cut(s) 1043, 1499
KpnI GGTACC 1 cut(s) 603
Ksp22I TGATCA 3 cut(s) 591, 619, 1515
KspAI GTTAAC 1 cut(s) 1438
LmnI GCTCC 2 cut(s) 373, 971
Lsp1109I GCAGC 3 cut(s) 547, 1264, 1465
LweI GCATC 1 cut(s) 1122
MaeI CTAG 3 cut(s) 462, 468, 1104
MaeII ACGT 3 cut(s) 577, 794, 1208
MaeIII GTNAC 3 cut(s) 107, 434, 1391
MbiI CCGCTC 1 cut(s) 1059
MboII GAAGA 5 cut(s) 368, 374, 377, 667, 904
MflI RGATCY 3 cut(s) 360, 780, 1294
MluCI AATT 8 cut(s) 61, 182, 298, 442, 878, 895, 1284, 1331
MlyI GAGTC 5 cut(s) 37, 388, 782, 853, 1259
MmeI TCCRAC 1 cut(s) 949
MroXI GAANNNNTTC 2 cut(s) 825, 1473
MseI TTAA 5 cut(s) 648, 729, 981, 1335, 1437
MslI CAYNNNNRTG 3 cut(s) 121, 1241, 1517
MspA1I CMGCKG 2 cut(s) 236, 1456
MspI CCGG 4 cut(s) 867, 1373, 1422, 1430
MspR9I CCNGG 5 cut(s) 534, 867, 1128, 1373, 1422
Mva1269I GAATGC 1 cut(s) 825
MvaI CCWGG 2 cut(s) 534, 1128
MwoI GCNNNNNNNGC 1 cut(s) 1462
NciI CCSGG 3 cut(s) 867, 1373, 1422
NdeI CATATG 1 cut(s) 1171
NlaIV GGNNCC 2 cut(s) 601, 1407
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 1488
OliI CACNNNNGTG 1 cut(s) 1241
PcsI WCGNNNNNNNCGW 2 cut(s) 791, 800
PctI GAATGC 1 cut(s) 825
PdmI GAANNNNTTC 2 cut(s) 825, 1473
PfeI GAWTC 5 cut(s) 103, 331, 397, 745, 1326
PflFI GACNNNGTC 1 cut(s) 1145
PflMI CCANNNNNTGG 1 cut(s) 533
PinAI ACCGGT 1 cut(s) 1429
PkrI GCNGC 3 cut(s) 562, 1279, 1455
PleI GAGTC 5 cut(s) 36, 387, 781, 852, 1259
PmaCI CACGTG 1 cut(s) 578
PmlI CACGTG 1 cut(s) 578
PpsI GAGTC 5 cut(s) 36, 387, 781, 852, 1259
Ppu21I YACGTR 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 532, 1126
PspCI CACGTG 1 cut(s) 578
PspGI CCWGG 2 cut(s) 532, 1126
PspN4I GGNNCC 2 cut(s) 601, 1407
PstI CTGCAG 1 cut(s) 492
PsuI RGATCY 3 cut(s) 360, 780, 1294
PsyI GACNNNGTC 1 cut(s) 1145
RsaI GTAC 6 cut(s) 71, 115, 601, 1205, 1416, 1526
RsaNI GTAC 6 cut(s) 70, 114, 600, 1204, 1415, 1525
RseI CAYNNNNRTG 3 cut(s) 121, 1241, 1517
SaqAI TTAA 5 cut(s) 648, 729, 981, 1335, 1437
SatI GCNGC 3 cut(s) 561, 1278, 1454
SchI GAGTC 5 cut(s) 37, 388, 782, 853, 1259
ScrFI CCNGG 5 cut(s) 534, 867, 1128, 1373, 1422
SfaNI GCATC 1 cut(s) 1122
SfcI CTRYAG 2 cut(s) 488, 1239
SgrAI CRCCGGYG 1 cut(s) 1429
SmiMI CAYNNNNRTG 3 cut(s) 121, 1241, 1517
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 8 cut(s) 61, 182, 298, 442, 878, 895, 1284, 1331
SsiI CCGC 5 cut(s) 234, 1057, 1178, 1418, 1456
SspMI CTAG 3 cut(s) 462, 468, 1104
StyD4I CCNGG 5 cut(s) 532, 865, 1126, 1371, 1420
TaaI ACNGT 2 cut(s) 113, 145
TaiI ACGT 3 cut(s) 580, 797, 1211
TaqI TCGA 6 cut(s) 9, 329, 876, 890, 992, 1448
TasI AATT 8 cut(s) 61, 182, 298, 442, 878, 895, 1284, 1331
TatI WGTACW 2 cut(s) 1203, 1524
TfiI GAWTC 5 cut(s) 103, 331, 397, 745, 1326
Tru1I TTAA 5 cut(s) 648, 729, 981, 1335, 1437
Tru9I TTAA 5 cut(s) 648, 729, 981, 1335, 1437
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 560, 1277, 1453
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 7 cut(s) 315, 455, 544, 823, 956, 1046, 1210
TspGWI ACGGA 2 cut(s) 755, 937
Tth111I GACNNNGTC 1 cut(s) 1145
Van91I CCANNNNNTGG 1 cut(s) 533
XagI CCTNNNNNAGG 1 cut(s) 1400
XapI RAATTY 1 cut(s) 442
XceI RCATGY 1 cut(s) 1488
XmiI GTMKAC 2 cut(s) 791, 1089
XmnI GAANNNNTTC 2 cut(s) 825, 1473
XspI CTAG 3 cut(s) 462, 468, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.