MD00G1040900.v1.1

Inositol-3-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0010908
Physical Location & Seq
Reverse (-)
6979057 .. 6981914
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1040900.v1.1.491

Sequence Viewer

Length: 1533 bp
ATGTTCATCGATAGCTTTAAGGTAGAGTCCCCGAACGTGGTGTACACAGAGAATGAGATTCATTCGGTGTACAGCTACGAAACCACTGAGCTTGTGCATGAGAACAGAAATGGAAAGTATCAGTGGATTGTGAAGCCCAAATCTATCAAATACGAATTCAAGACTGATATCCATGTCCCCAAACTAGGGGTAATGCTGGTGGGTTGGGGTGGAAACAATGGCTCAACCCTCACTGCTGGTGTGATTGCAAACAGAGAAGGAATCTCCTGGGCAACCAAAGACAAGGTGCAACAAGCCAACTACTTTGGCTCACTGACCCAAGCCTCATCCATCCGTGTTGGGTCTTTCAACGGCGAGGAGATTTATGCCCCGTTCAAGAGCCTCCTGCCTATGGTGAAGCCCGATGACATTGTGTTTGGGGGTTGGGACATTAGTGACATGAACTTAGCAGATGCAATGGCAAGGGCAAAGGTCCTTGACATTGATCTGCAAAAGCAACTGAGGCCATACATGGAGTCCATGCTCCCACTCCCTGGAATCTACGACCCCGATTTCATCGCTGCCAACCAAGGTGCTCGTGCCAACAACGTCATCAAGGGCACCAAGAAGGAACAACTCCAACAAGTCATTAAAGACATTAGGGAGTTCAAGGAGAAGAGCAAGGTGGACAAGGTGGTTGTGCTGTGGACTGCCAACACTGAAAGGTATAGTAATGTGATTGTGGGGCTAAACGACACCGTTGAGAACCTGTTGGGTTCGGTGGACAAGAATGACGCTGAGATATCTCCTTCCACATTGTATGCCATAGCTTGTGTTCTTGAAAATGTTCCTTTCATCAATGGAAGCCCACAAAACACTTTTGTCCCAGGACTCATTGATTTGGCAATTAGGAGAAACAGTTTGATCGGTGGAGATGACTTTAAGAGTGGTCAGACCAAGATGAAGTCTGTGTTGGTTGATTTCCTTGTTGGGGCTGGAATCAAGCCAACATCCATAGTGAGCTACAACCATCTTGGGAACAATGACGGCATGAACCTTTCCGCACCGCAAACCTTCCGGTCAAAAGAGATTTCAAAGAGCAATGTTGTGGATGACATGGTGTCCAGCAATGGCATCCTCTACGGGCCAGGCGAGCACCCTGACCATGTTGTGGTGATCAAGTATGTGCCATATGTTGGGGACAGCAAGAGAGCCCTGGATGAGTACACCTCTGAGATTTTCATGGGTGGGAAAAGCACCATTGTGTTGCACAACACCTGTGAGGATTCCCTCTTGGCTGCTCCTATCATCCTCGATTTAGTTCTCCTCGCTGAACTCAGCACCCGTATCCAGCTCAAATCTGAAGCAGAGGCCAAGTTCCACTCTTTCCACCCTGTGGCTACAATTCTCAGTTACCTCAGCAAGGCTCCTCTTGTTCCGCCAGGTACACCCGTGGTGAATGCACTGTCAAAGCAGAGGGCAATGCTGGAGAACATACTGAGGGCTTGTGTTGGTCTGGCTCCAGAGAACAACATGATCTTGGAATACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004512 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0006020 GO:0006021 GO:0006066 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009266 GO:0009267 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010154 GO:0010264 GO:0016036 GO:0016051 GO:0016853 GO:0016872 GO:0017144 GO:0019637 GO:0019751 GO:0022414 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032958 GO:0033517 GO:0033554 GO:0034637 GO:0042221 GO:0042398 GO:0042493 GO:0042542 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045017 GO:0046165 GO:0046173 GO:0046474 GO:0046486 GO:0046677 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0071496 GO:0071704 GO:0090407 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00521 ko00562 ko01100 ko01130 map00521 map00562 map01100 map01130
Pfam Domains
Protein Families
Inos-1-P_synth NAD_binding_5

Protein Analysis

511

Amino Acids

56.18

Weight (kDa)

5.81

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_5 PF07994 62 - 494 3.1e-143 Myo-inositol-1-phosphate synthase
Inos-1-P_synth PF01658 310 - 423 2.2e-36 Myo-inositol-1-phosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22240 AT2G22240 AT2G22240 AT4G39800 AT5G10170
fragaria_vesca FvH4_1g21450 FvH4_1g21450
malus_domestica MD00G1040900.v1.1
prunus_persica Prupe.6G180500_v2.0.a1
pyrus_communis pycom01g05310 pycom15g29820
rosa_chinensis RchiOBHm_Chr2g0115271
rosa_laevigata RLG00000018172
rosa_multiflora Rmu_sc0001626.1_g000043
rosa_roxburghii Rroxscaffold_2G00130810
rosa_rugosa Rorug02G0195600
rosa_samantha Rh2AG253400 Rh2BG263800 Rh2DG261600
rosa_wichuraiana Rw2G019810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 599
AccB7I CCANNNNNTGG 4 cut(s) 533, 1150, 1175, 1375
AciI CCGC 3 cut(s) 1041, 1046, 1418
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 1362
AdeI CACNNNGTG 1 cut(s) 1375
AfaI GTAC 4 cut(s) 44, 71, 1205, 1426
AgsI TTSAA 6 cut(s) 160, 349, 376, 649, 821, 1074
AhdI GACNNNNNGTC 1 cut(s) 1099
AjnI CCWGG 6 cut(s) 266, 532, 865, 1126, 1194, 1420
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AleI CACNNNNGTG 1 cut(s) 1241
AluBI AGCT 6 cut(s) 15, 75, 91, 809, 1002, 1333
AluI AGCT 6 cut(s) 15, 75, 91, 809, 1002, 1333
Alw21I GWGCWC 2 cut(s) 577, 1137
AoxI GGCC 3 cut(s) 503, 1124, 1350
ApeKI GCWGC 2 cut(s) 560, 1277
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
Asp700I GAANNNNTTC 1 cut(s) 825
AspS9I GGNCC 2 cut(s) 472, 1124
AsuHPI GGTGA 3 cut(s) 406, 1165, 1447
AvaII GGWCC 1 cut(s) 472
BaeGI GKGCMC 1 cut(s) 602
BaeI ACNNNNGTAYC 2 cut(s) 1416, 1449
BanI GGYRCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 1195
BauI CACGAG 1 cut(s) 576
Bbv12I GWGCWC 2 cut(s) 577, 1137
BbvCI CCTCAGC 1 cut(s) 1397
BbvI GCAGC 2 cut(s) 547, 1264
BccI CCATC 2 cut(s) 338, 1017
BceAI ACGGC 2 cut(s) 367, 1042
BciT130I CCWGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
BciVI GTATCC 1 cut(s) 1337
BclI TGATCA 1 cut(s) 1155
BfaI CTAG 1 cut(s) 185
BfuI GTATCC 1 cut(s) 1337
BisI GCNGC 2 cut(s) 561, 1278
BlsI GCNGC 2 cut(s) 562, 1279
Bme1390I CCNGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
Bme18I GGWCC 1 cut(s) 472
BmeRI GACNNNNNGTC 1 cut(s) 1099
BmgT120I GGNCC 2 cut(s) 472, 1124
BmiI GGNNCC 3 cut(s) 601, 1407, 1500
BmrFI CCNGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
BmsI GCATC 2 cut(s) 442, 1122
BplI GAGNNNNNCTC 2 cut(s) 1193, 1225
BpmI CTGGAG 2 cut(s) 1485, 1487
Bpu10I CCTNAGC 1 cut(s) 1397
Bsa29I ATCGAT 1 cut(s) 9
BsaJI CCNNGG 6 cut(s) 267, 532, 568, 865, 1194, 1431
BsaWI WCCGGW 1 cut(s) 1056
BsaXI ACNNNNNCTCC 2 cut(s) 883, 913
Bse3DI GCAATG 4 cut(s) 462, 1087, 1114, 1467
BseBI CCWGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 6 cut(s) 267, 532, 568, 865, 1194, 1431
BseGI GGATG 7 cut(s) 326, 330, 989, 1096, 1113, 1204, 1287
BseMI GCAATG 4 cut(s) 462, 1087, 1114, 1467
BseMII CTCAG 8 cut(s) 78, 491, 768, 1203, 1330, 1402, 1411, 1469
BseRI GAGGAG 3 cut(s) 371, 1295, 1398
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 2 cut(s) 547, 1264
BshFI GGCC 3 cut(s) 505, 1126, 1352
BshNI GGYRCC 1 cut(s) 599
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 577, 1137
BsiSI CCGG 1 cut(s) 1057
BslFI GGGAC 5 cut(s) 13, 161, 440, 848, 1193
BsmFI GGGAC 5 cut(s) 13, 161, 440, 848, 1193
BsmI GAATGC 1 cut(s) 1444
BsnI GGCC 3 cut(s) 505, 1126, 1352
Bsp1286I GDGCHC 4 cut(s) 577, 602, 1137, 1195
Bsp1407I TGTACA 2 cut(s) 42, 69
Bsp143I GATC 4 cut(s) 484, 903, 1155, 1515
BspACI CCGC 3 cut(s) 1041, 1046, 1418
BspANI GGCC 3 cut(s) 505, 1126, 1352
BspCNI CTCAG 8 cut(s) 79, 492, 769, 1204, 1329, 1401, 1410, 1470
BspDI ATCGAT 1 cut(s) 9
BspLI GGNNCC 3 cut(s) 601, 1407, 1500
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 599
BsrDI GCAATG 4 cut(s) 462, 1087, 1114, 1467
BsrGI TGTACA 2 cut(s) 42, 69
BssECI CCNNGG 6 cut(s) 267, 532, 568, 865, 1194, 1431
BssMI GATC 4 cut(s) 484, 903, 1155, 1515
BssSI CACGAG 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 568
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
Bst4CI ACNGT 3 cut(s) 739, 899, 1446
Bst6I CTCTTC 1 cut(s) 650
BstAUI TGTACA 2 cut(s) 42, 69
BstC8I GCNNGC 1 cut(s) 1133
BstDEI CTNAG 9 cut(s) 87, 445, 500, 777, 1212, 1316, 1388, 1397, 1478
BstDSI CCRYGG 1 cut(s) 1431
BstENI CCTNNNNNAGG 1 cut(s) 1400
BstF5I GGATG 7 cut(s) 326, 330, 989, 1096, 1113, 1204, 1287
BstKTI GATC 4 cut(s) 487, 906, 1158, 1518
BstMBI GATC 4 cut(s) 484, 903, 1155, 1515
BstMWI GCNNNNNNNGC 2 cut(s) 502, 1132
BstNI CCWGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
BstSCI CCNGG 6 cut(s) 266, 532, 865, 1126, 1194, 1420
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 2 cut(s) 547, 1264
Bsu15I ATCGAT 1 cut(s) 9
BsuI GTATCC 1 cut(s) 1337
BsuRI GGCC 3 cut(s) 505, 1126, 1352
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 1431
BtgZI GCGATG 1 cut(s) 541
BtsCI GGATG 7 cut(s) 326, 330, 989, 1096, 1113, 1204, 1287
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 6 cut(s) 84, 128, 231, 311, 696, 1442
Cac8I GCNNGC 1 cut(s) 1133
Cfr13I GGNCC 2 cut(s) 472, 1124
ClaI ATCGAT 1 cut(s) 9
CseI GACGC 1 cut(s) 782
Csp6I GTAC 4 cut(s) 43, 70, 1204, 1425
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviQI GTAC 4 cut(s) 43, 70, 1204, 1425
DdeI CTNAG 9 cut(s) 87, 445, 500, 777, 1212, 1316, 1388, 1397, 1478
DpnI GATC 4 cut(s) 486, 905, 1157, 1517
DpnII GATC 4 cut(s) 484, 903, 1155, 1515
DraIII CACNNNGTG 1 cut(s) 1375
DriI GACNNNNNGTC 1 cut(s) 1099
Eam1104I CTCTTC 1 cut(s) 650
Eam1105I GACNNNNNGTC 1 cut(s) 1099
EarI CTCTTC 1 cut(s) 650
EciI GGCGGA 1 cut(s) 1407
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 1195
Eco32I GATATC 2 cut(s) 169, 783
Eco47I GGWCC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 1362
EcoNI CCTNNNNNAGG 1 cut(s) 1400
EcoO109I RGGNCCY 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 6 cut(s) 266, 532, 865, 1126, 1194, 1420
EcoRV GATATC 2 cut(s) 169, 783
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 1195
ErhI CCWWGG 1 cut(s) 568
FaqI GGGAC 5 cut(s) 13, 161, 440, 848, 1193
FauNDI CATATG 1 cut(s) 1171
FbaI TGATCA 1 cut(s) 1155
Fnu4HI GCNGC 2 cut(s) 561, 1278
FokI GGATG 7 cut(s) 313, 317, 976, 1100, 1103, 1211, 1274
FriOI GRGCYC 1 cut(s) 1195
Fsp4HI GCNGC 2 cut(s) 561, 1278
FspBI CTAG 1 cut(s) 185
GluI GCNGC 2 cut(s) 561, 1278
GsuI CTGGAG 2 cut(s) 1485, 1487
HaeIII GGCC 3 cut(s) 505, 1126, 1352
HapII CCGG 1 cut(s) 1057
HgaI GACGC 1 cut(s) 782
HinfI GANTC 8 cut(s) 26, 58, 261, 515, 537, 870, 978, 1265
HpaII CCGG 1 cut(s) 1057
HphI GGTGA 3 cut(s) 406, 1165, 1447
Hpy166II GTNNAC 8 cut(s) 43, 45, 70, 667, 687, 763, 1206, 1427
Hpy188I TCNGA 3 cut(s) 933, 1213, 1342
Hpy188III TCNNGA 4 cut(s) 160, 376, 818, 1502
Hpy8I GTNNAC 8 cut(s) 43, 45, 70, 667, 687, 763, 1206, 1427
HpyAV CCTTC 4 cut(s) 251, 601, 798, 1063
HpyCH4III ACNGT 3 cut(s) 739, 899, 1446
HpyCH4IV ACGT 2 cut(s) 36, 588
HpyCH4V TGCA 7 cut(s) 97, 248, 289, 455, 490, 1249, 1442
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 1132
HpyF3I CTNAG 9 cut(s) 87, 445, 500, 777, 1212, 1316, 1388, 1397, 1478
HpySE526I ACGT 2 cut(s) 36, 588
Ksp22I TGATCA 1 cut(s) 1155
Kzo9I GATC 4 cut(s) 484, 903, 1155, 1515
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 4 cut(s) 528, 1285, 1411, 1504
Lsp1109I GCAGC 2 cut(s) 547, 1264
LweI GCATC 2 cut(s) 442, 1122
MaeI CTAG 1 cut(s) 185
MaeII ACGT 2 cut(s) 36, 588
MaeIII GTNAC 2 cut(s) 434, 1391
MalI GATC 4 cut(s) 486, 905, 1157, 1517
MboI GATC 4 cut(s) 484, 903, 1155, 1515
MboII GAAGA 1 cut(s) 667
MhlI GDGCHC 4 cut(s) 577, 602, 1137, 1195
MluCI AATT 3 cut(s) 155, 885, 1383
MlyI GAGTC 3 cut(s) 35, 524, 864
MmeI TCCRAC 1 cut(s) 643
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 3 cut(s) 18, 630, 921
MslI CAYNNNNRTG 1 cut(s) 1241
MspI CCGG 1 cut(s) 1057
MspR9I CCNGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
Mva1269I GAATGC 1 cut(s) 1444
MvaI CCWGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
MwoI GCNNNNNNNGC 2 cut(s) 502, 1132
NdeI CATATG 1 cut(s) 1171
NdeII GATC 4 cut(s) 484, 903, 1155, 1515
NlaIV GGNNCC 3 cut(s) 601, 1407, 1500
NmuCI GTSAC 1 cut(s) 434
OliI CACNNNNGTG 1 cut(s) 1241
PciSI GCTCTTC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 1 cut(s) 1128
PctI GAATGC 1 cut(s) 1444
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 5 cut(s) 58, 261, 537, 978, 1265
PflMI CCANNNNNTGG 4 cut(s) 533, 1150, 1175, 1375
PkrI GCNGC 2 cut(s) 562, 1279
PleI GAGTC 3 cut(s) 34, 523, 864
PpsI GAGTC 3 cut(s) 34, 523, 864
PpuMI RGGWCCY 1 cut(s) 472
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 6 cut(s) 266, 532, 865, 1126, 1194, 1420
PspGI CCWGG 6 cut(s) 266, 532, 865, 1126, 1194, 1420
PspN4I GGNNCC 3 cut(s) 601, 1407, 1500
PspPI GGNCC 2 cut(s) 472, 1124
PspPPI RGGWCCY 1 cut(s) 472
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
RsaI GTAC 4 cut(s) 44, 71, 1205, 1426
RsaNI GTAC 4 cut(s) 43, 70, 1204, 1425
RseI CAYNNNNRTG 1 cut(s) 1241
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 18, 630, 921
SatI GCNGC 2 cut(s) 561, 1278
Sau3AI GATC 4 cut(s) 484, 903, 1155, 1515
Sau96I GGNCC 2 cut(s) 472, 1124
SchI GAGTC 3 cut(s) 35, 524, 864
ScrFI CCNGG 6 cut(s) 268, 534, 867, 1128, 1196, 1422
SduI GDGCHC 4 cut(s) 577, 602, 1137, 1195
SfaNI GCATC 2 cut(s) 442, 1122
SinI GGWCC 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 1241
Sse9I AATT 3 cut(s) 155, 885, 1383
SsiI CCGC 3 cut(s) 1041, 1046, 1418
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 6 cut(s) 266, 532, 865, 1126, 1194, 1420
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 3 cut(s) 739, 899, 1446
TaiI ACGT 2 cut(s) 39, 591
TaqI TCGA 2 cut(s) 9, 1293
TasI AATT 3 cut(s) 155, 885, 1383
TatI WGTACW 3 cut(s) 42, 69, 1203
TfiI GAWTC 5 cut(s) 58, 261, 537, 978, 1265
Tru1I TTAA 3 cut(s) 18, 630, 921
Tru9I TTAA 3 cut(s) 18, 630, 921
TscAI CASTG 6 cut(s) 91, 128, 238, 318, 703, 1449
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 2 cut(s) 560, 1277
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 7 cut(s) 50, 455, 544, 823, 956, 1046, 1210
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 6 cut(s) 91, 128, 238, 318, 703, 1449
Van91I CCANNNNNTGG 4 cut(s) 533, 1150, 1175, 1375
VpaK11BI GGWCC 1 cut(s) 472
XagI CCTNNNNNAGG 1 cut(s) 1400
XapI RAATTY 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.