Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011977

Physical Location & Seq

Genomic Coordinates Reverse (-)

9881260 .. 9883397

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGAAGTATTGAGGGTCAAGAAACACACGTTCTAATGGTAGCATTACCGTTCCAAGGTCACCTAAATCCAATGCTCAAATTCGCCAAACATCTCGCACGAACCAACCTACACTTCACTCTCGCCACCATTGAATCAGCCCGTGACCTCCTCTCATCCACCGATGAACCCCATAGCCTGGTGGATCTTGTGTTCTTCTCTGATGGTCTGCCTAAAGACGATCCAAGAGACCACGAACCTCTCACAGAGTCATTGAGAAAAGTCGGAGCCAATAACTTTTCGAAAATAATCGAAGGAAAGAGATTTGATTGCATCATCTCTGTGCCTTTTACTCCATGGGTTCCAGCTGTTGCAGCTGCTCATAACATTCCTTGTGCAATCCTCTGGATTGAAGCTTGTGCAGGTTTCTCAGTTTATTACCGTTACTACATGAAGACAAACTCTTTCCCCGATCTCGAAGATCCTAATCAAAAAGTGGAGTTACCAGGCTTACCGTTTTTAGAAGTCCGAGATCTCCCGACATTGATGTTACCTTCTCACGGTGCTATCTTCAATACACTAATGGCGGAATTCGTCGAATGCTTGAAAGATGTTAAATGGGTTTTGGCTAATTCATTTTATGAACTCGAATCGGTTATAATTGAATCGATGTTTGATTTAAAACCTATTATCCCAATTGGTCCTCTTGTTTCTCCATTTCTTTTGGGAGCTGATGAGGACAAAATCTTAGATGGGAAAAGCCTAGATATGTGGAAAGCTGATGATTATTGTATGGAGTGGCTTGACAAACAAGTTAGGTCTTCAGTTTTTACATATCTTTCGGAAGCATACTCAAATCATCAGAGAATCAAGTCGAGACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047215 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

287

Amino Acids

32.49

Weight (kDa)

5.11

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23210 AT2G23250 AT2G23260
fragaria_vesca	FvH4_1g16840
malus_domestica	MD02G1179400.v1.1
prunus_persica	Prupe.6G228400_v2.0.a1
pyrus_communis	pycom02g14550
rosa_chinensis	RchiOBHm_Chr2g0106741
rosa_laevigata	RLG00000017537
rosa_multiflora	Rmu_sc0004000.1_g000018 Rmu_sc0004000.1_g000020
rosa_roxburghii	Rroxscaffold_2G00136810
rosa_rugosa	Rorug02G0138400
rosa_samantha	Rh2AG189300 Rh2BG200700 Rh2CG194300 Rh2DG195500
rosa_wichuraiana	Rw2G014890 Rw2G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	178
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	3 cut(s)	192, 215, 455
AcsI	RAATTY	2 cut(s)	80, 569
AcuI	CTGAAG	1 cut(s)	786
AfiI	CCNNNNNNNGG	3 cut(s)	56, 178, 539
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	5 cut(s)	134, 392, 553, 586, 644
AjnI	CCWGG	2 cut(s)	177, 484
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	5 cut(s)	347, 356, 395, 710, 758
AluI	AGCT	5 cut(s)	347, 356, 395, 710, 758
Alw26I	GTCTC	2 cut(s)	222, 850
AlwI	GGATC	3 cut(s)	192, 215, 455
ApeKI	GCWGC	2 cut(s)	353, 356
ApoI	RAATTY	2 cut(s)	80, 569
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	440, 792
BbvI	GCAGC	2 cut(s)	343, 365
BccI	CCATC	2 cut(s)	197, 725
BciT130I	CCWGG	2 cut(s)	179, 486
BcoDI	GTCTC	2 cut(s)	222, 850
BfaI	CTAG	1 cut(s)	743
BfuAI	ACCTGC	1 cut(s)	392
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	2 cut(s)	354, 357
BlsI	GCNGC	2 cut(s)	355, 358
Bme1390I	CCNGG	2 cut(s)	179, 486
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	2 cut(s)	268, 342
BmrFI	CCNGG	2 cut(s)	179, 486
BmsI	GCATC	1 cut(s)	321
BpiI	GAAGAC	2 cut(s)	440, 792
Bpu14I	TTCGAA	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	2 cut(s)	222, 850
BsaJI	CCNNGG	2 cut(s)	55, 335
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 178, 539
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	179, 486
BseCI	ATCGAT	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	55, 335
BseGI	GGATG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	56, 178, 539
BseMII	CTCAG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	343, 365
BsgI	GTGCAG	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	647
BslI	CCNNNNNNNGG	3 cut(s)	56, 178, 539
BsmAI	GTCTC	2 cut(s)	222, 850
BsmI	GAATGC	1 cut(s)	584
Bso31I	GGTCTC	2 cut(s)	222, 850
Bsp119I	TTCGAA	1 cut(s)	281
Bsp143I	GATC	5 cut(s)	184, 220, 451, 460, 511
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	1 cut(s)	566
BspCNI	CTCAG	1 cut(s)	422
BspDI	ATCGAT	1 cut(s)	647
BspLI	GGNNCC	2 cut(s)	268, 342
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	3 cut(s)	192, 215, 455
BspT104I	TTCGAA	1 cut(s)	281
BspTNI	GGTCTC	2 cut(s)	222, 850
BssECI	CCNNGG	2 cut(s)	55, 335
BssMI	GATC	5 cut(s)	184, 220, 451, 460, 511
BssT1I	CCWWGG	2 cut(s)	55, 335
Bst2UI	CCWGG	2 cut(s)	179, 486
Bst4CI	ACNGT	4 cut(s)	51, 422, 495, 542
BstBI	TTCGAA	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	409, 727
BstDSI	CCRYGG	1 cut(s)	335
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	5 cut(s)	187, 223, 454, 463, 514
BstMAI	GTCTC	2 cut(s)	222, 850
BstMBI	GATC	5 cut(s)	184, 220, 451, 460, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	179, 486
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	177, 484
BstV1I	GCAGC	2 cut(s)	343, 365
BstV2I	GAAGAC	2 cut(s)	440, 792
BstX2I	RGATCY	3 cut(s)	184, 460, 511
BstYI	RGATCY	3 cut(s)	184, 460, 511
Bsu15I	ATCGAT	1 cut(s)	647
BsuTUI	ATCGAT	1 cut(s)	647
BtgI	CCRYGG	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	680
ClaI	ATCGAT	1 cut(s)	647
CviAII	CATG	2 cut(s)	336, 430
DdeI	CTNAG	2 cut(s)	409, 727
DpnI	GATC	5 cut(s)	186, 222, 453, 462, 513
DpnII	GATC	5 cut(s)	184, 220, 451, 460, 511
DraI	TTTAAA	1 cut(s)	660
EciI	GGCGGA	1 cut(s)	581
Eco130I	CCWWGG	2 cut(s)	55, 335
Eco31I	GGTCTC	2 cut(s)	222, 850
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	786
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	177, 484
EcoT14I	CCWWGG	2 cut(s)	55, 335
ErhI	CCWWGG	2 cut(s)	55, 335
FaeI	CATG	2 cut(s)	339, 433
FatI	CATG	2 cut(s)	335, 429
Fnu4HI	GCNGC	2 cut(s)	354, 357
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	354, 357
FspBI	CTAG	1 cut(s)	743
GluI	GCNGC	2 cut(s)	354, 357
Hin1II	CATG	2 cut(s)	339, 433
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	5 cut(s)	134, 248, 629, 644, 846
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	5 cut(s)	202, 266, 509, 823, 843
Hpy188III	TCNNGA	5 cut(s)	20, 385, 455, 517, 855
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	2 cut(s)	287, 543
HpyCH4III	ACNGT	4 cut(s)	51, 422, 495, 542
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	312, 353, 377, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	409, 727
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	339, 433
Kzo9I	GATC	5 cut(s)	184, 220, 451, 460, 511
LmnI	GCTCC	2 cut(s)	266, 707
LpnPI	CCDG	7 cut(s)	164, 191, 357, 370, 387, 471, 498
Lsp1109I	GCAGC	2 cut(s)	343, 365
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	743
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	5 cut(s)	59, 143, 422, 480, 528
MalI	GATC	5 cut(s)	186, 222, 453, 462, 513
MboI	GATC	5 cut(s)	184, 220, 451, 460, 511
MboII	GAAGA	5 cut(s)	187, 445, 470, 541, 792
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	3 cut(s)	184, 460, 511
MluCI	AATT	5 cut(s)	80, 569, 610, 639, 675
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	7, 158, 161, 249, 392, 693, 709
MseI	TTAA	2 cut(s)	594, 659
MslI	CAYNNNNRTG	1 cut(s)	320
MspA1I	CMGCKG	2 cut(s)	347, 356
MspR9I	CCNGG	2 cut(s)	179, 486
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	2 cut(s)	179, 486
MwoI	GCNNNNNNNGC	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	5 cut(s)	184, 220, 451, 460, 511
NlaIII	CATG	2 cut(s)	339, 433
NlaIV	GGNNCC	2 cut(s)	268, 342
NmuCI	GTSAC	2 cut(s)	59, 143
NspV	TTCGAA	1 cut(s)	281
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	4 cut(s)	134, 629, 644, 846
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	355, 358
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	177, 484
PspEI	GGTNACC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	177, 484
PspN4I	GGNNCC	2 cut(s)	268, 342
PspPI	GGNCC	1 cut(s)	680
PsuI	RGATCY	3 cut(s)	184, 460, 511
PvuII	CAGCTG	2 cut(s)	347, 356
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	594, 659
SatI	GCNGC	2 cut(s)	354, 357
Sau3AI	GATC	5 cut(s)	184, 220, 451, 460, 511
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	179, 486
SfaNI	GCATC	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	80, 569, 610, 639, 675
SsiI	CCGC	1 cut(s)	566
SspMI	CTAG	1 cut(s)	743
StyD4I	CCNGG	2 cut(s)	177, 484
StyI	CCWWGG	2 cut(s)	55, 335
TaaI	ACNGT	4 cut(s)	51, 422, 495, 542
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	7 cut(s)	281, 291, 456, 576, 627, 647, 854
TasI	AATT	5 cut(s)	80, 569, 610, 639, 675
TfiI	GAWTC	4 cut(s)	134, 629, 644, 846
Tru1I	TTAA	2 cut(s)	594, 659
Tru9I	TTAA	2 cut(s)	594, 659
TseFI	GTSAC	2 cut(s)	59, 143
TseI	GCWGC	2 cut(s)	353, 356
Tsp45I	GTSAC	2 cut(s)	59, 143
TspDTI	ATGAA	4 cut(s)	180, 446, 603, 636
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	2 cut(s)	80, 569
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.