FvH4_1g16840

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
9751124 .. 9755033
3910 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16840.t1

Sequence Viewer

Length: 1434 bp
ATGACTACTTCAGATGCAGATCAAGAACCAAAGCAACTCCATGTTCTACTAGTAGTTATCTTACAAGCTCACATCAATCCCATGCTGAGGTTCGCAAGGTGCTTAGCTTCTAAACGCGTCCACGTCACTCTCGCCGCCACCGAAACCGTCAGAAACCACTTGCTCCACCGCACCAACCTCTCCACCGCCCCAACCAAACACTCCATGATTGAGTTCGAGTTCTTTTCCGACGGCCTCACCGCCGAGTTCGACCGCGACAAAAGCGCCGAGACCTTCGCCGCCCTCCAAGCCGTCAGCGCCAAAAATCTCTCCGTACTCATCAACAACTTCTCCACCAAGAAATCGAAACTCTCTTGCATCGTCTTCAACCCCTTCGCTCCATGGGTCGCCGATGTGGCCGCGGAGCACGGAATCCCCTGCGCATTGCTCTGGAACCAAGCCTGTTCGATCTTCTCCATCAACTACCGCTACTACAAGAACTTACTAAACCCTTTTGAGTTCATGGAGTGTCCGGGAATTCCAAATCTTCAAGTCAGCGATCTTCCGAGCACTATACTTCCTTCAACTCCTGTTCACTTCAAGAAACTCATCTCCGATTCGGCTCGCTGCGCCGAGAAGGCGAGCTGGGTGCTGGGGAACTCATTTTACGAGCTTGAAAGAGAGATCATAGACTCGATGGAGAGTCTGGTTCCGATACGGCCAATCGGGCCGTTGGTCTCTCCATTTCTACTGGGAAAGAGCGATGCAGATGATGAGAGTTCAGATTCTGTTGATGTGTGGGAAGCTGAAGAGTCGTGCATAGAGTGGCTGGACAAGCAGAGGCCTTGCTCTGTTATTTTCGTCTCGTTTGGACGAGTGACTGTGTTGTCGCAGAAGCAGATTGATAATATCTCCACGGCGTTGAAGAACAGTGGCAGGCCGTTTCTCTGGTCTTTGAAGCCGCCGGCGGAAGGTTCTACGAGGGATTCCGGCGAACTGTCACGTGAGTTCTTGGAAGAGACCAAAGAGAAGGGAATGGTGGTCACATGGTGCTCACAGGAGAAAGTGCTAAAGCACAAGGCCGTCGCATGTTTTATGACTCACGGCGGGTGGAACTCGTCCCTTGAGACGGTGATATCAGGAGTGCCCGTGATAGTTTATCCGGAGTGGACAGACCAGCCAACAAATGCCAAGCTTTTAAGTGATGTATTCAAGGTGGGTGTGAGGGTTAGGATCAATGGTGACGAAGAAGATGGAGTTGTTAGCACAGACGAAGTTGAAAGATGCATCGAGGAGGTTACTGAGGGGCCGAGGGCATCAGAAATGAAGAAAAGGGCCATGGAGTTGAAGGAAGCAGCAAACGAAGCATTGGAGGTTGGTGGCTCTTCTGACCAGAATATTGATAAATTCATCGAGGACATTTCTACAAGATCAGTCTGTAACACTAAACAATGA

Protein Analysis

478

Amino Acids

53.12

Weight (kDa)

5.22

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 441 1.7e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011977)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 865
Acc16I TGCGCA 1 cut(s) 421
AccII CGCG 3 cut(s) 117, 255, 401
AccIII TCCGGA 1 cut(s) 1141
AclWI GGATC 1 cut(s) 1220
AcoI YGGCCR 2 cut(s) 396, 698
AcsI RAATTY 2 cut(s) 516, 1385
AcuI CTGAAG 1 cut(s) 807
AcvI CACGTG 1 cut(s) 983
AdeI CACNNNGTG 1 cut(s) 1029
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 3 cut(s) 87, 950, 1108
AflIII ACRYGT 1 cut(s) 115
AhlI ACTAGT 1 cut(s) 49
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 6 cut(s) 68, 107, 624, 652, 785, 1174
AluI AGCT 6 cut(s) 68, 107, 624, 652, 785, 1174
Alw21I GWGCWC 3 cut(s) 408, 551, 1034
Alw26I GTCTC 5 cut(s) 263, 721, 847, 992, 1100
AlwI GGATC 1 cut(s) 1220
AlwNI CAGNNNCTG 1 cut(s) 767
Aor13HI TCCGGA 1 cut(s) 1141
AoxI GGCC 9 cut(s) 232, 396, 698, 707, 821, 917, 1059, 1286, 1314
ApeKI GCWGC 2 cut(s) 606, 1334
ApoI RAATTY 2 cut(s) 516, 1385
AspLEI GCGC 4 cut(s) 266, 299, 422, 611
AspS9I GGNCC 3 cut(s) 707, 1286, 1314
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 3 cut(s) 229, 1123, 1232
BaeGI GKGCMC 1 cut(s) 1128
BbrPI CACGTG 1 cut(s) 983
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 3 cut(s) 408, 551, 1034
BbvCI CCTCAGC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 593, 1346
BccI CCATC 3 cut(s) 464, 670, 1226
BceAI ACGGC 8 cut(s) 247, 275, 694, 713, 904, 912, 1046, 1099
BcgI CGANNNNNNTGC 2 cut(s) 610, 644
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 5 cut(s) 263, 721, 847, 992, 1100
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 2 cut(s) 267, 300
BglI GCCNNNNNGGC 3 cut(s) 395, 617, 706
BisI GCNGC 6 cut(s) 135, 279, 399, 607, 941, 1335
BlpI GCTNAGC 1 cut(s) 103
BlsI GCNGC 6 cut(s) 136, 280, 400, 608, 942, 1336
Bme1390I CCNGG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 3 cut(s) 707, 1286, 1314
BmiI GGNNCC 3 cut(s) 434, 690, 1287
BmrFI CCNGG 1 cut(s) 513
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 6 cut(s) 4, 366, 733, 1253, 1275, 1304
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 1 cut(s) 355
Bpu10I CCTNAGC 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 1124
BpuMI CCSGG 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 983
BsaBI GATNNNNATC 1 cut(s) 18
BsaI GGTCTC 3 cut(s) 263, 721, 992
BsaJI CCNNGG 5 cut(s) 380, 399, 894, 1289, 1317
BsaWI WCCGGW 1 cut(s) 1141
BsaXI ACNNNNNCTCC 4 cut(s) 314, 344, 1113, 1143
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 950, 1108
Bse118I RCCGGY 1 cut(s) 943
Bse1I ACTGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 422
Bse8I GATNNNNATC 1 cut(s) 18
BseAI TCCGGA 1 cut(s) 1141
BseDI CCNNGG 5 cut(s) 380, 399, 894, 1289, 1317
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 87, 950, 1108
BseMI GCAATG 1 cut(s) 422
BseMII CTCAG 2 cut(s) 77, 1272
BseNI ACTGG 1 cut(s) 735
BseRI GAGGAG 1 cut(s) 1286
BseSI GKGCMC 1 cut(s) 1128
BseXI GCAGC 2 cut(s) 593, 1346
BseYI CCCAGC 2 cut(s) 624, 631
Bsh1236I CGCG 3 cut(s) 117, 255, 401
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 9 cut(s) 234, 398, 700, 709, 823, 919, 1061, 1288, 1316
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 3 cut(s) 408, 551, 1034
BsiSI CCGG 4 cut(s) 512, 944, 969, 1142
BslFI GGGAC 1 cut(s) 1084
BslI CCNNNNNNNGG 3 cut(s) 87, 950, 1108
BsmAI GTCTC 5 cut(s) 263, 721, 847, 992, 1100
BsmBI CGTCTC 2 cut(s) 847, 1100
BsmFI GGGAC 1 cut(s) 1084
BsnI GGCC 9 cut(s) 234, 398, 700, 709, 823, 919, 1061, 1288, 1316
Bso31I GGTCTC 3 cut(s) 263, 721, 992
Bsp1286I GDGCHC 4 cut(s) 408, 551, 1034, 1128
Bsp13I TCCGGA 1 cut(s) 1141
Bsp143I GATC 6 cut(s) 19, 447, 538, 663, 1212, 1409
Bsp1720I GCTNAGC 1 cut(s) 103
Bsp19I CCATGG 2 cut(s) 380, 1317
BspANI GGCC 9 cut(s) 234, 398, 700, 709, 823, 919, 1061, 1288, 1316
BspCNI CTCAG 2 cut(s) 78, 1273
BspEI TCCGGA 1 cut(s) 1141
BspFNI CGCG 3 cut(s) 117, 255, 401
BspLI GGNNCC 3 cut(s) 434, 690, 1287
BspPI GGATC 1 cut(s) 1220
BspQI GCTCTTC 1 cut(s) 1369
BspTNI GGTCTC 3 cut(s) 263, 721, 992
BsrDI GCAATG 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 943
BsrI ACTGG 1 cut(s) 735
BssAI RCCGGY 1 cut(s) 943
BssECI CCNNGG 5 cut(s) 380, 399, 894, 1289, 1317
BssMI GATC 6 cut(s) 19, 447, 538, 663, 1212, 1409
BssT1I CCWWGG 2 cut(s) 380, 1317
Bst4CI ACNGT 5 cut(s) 148, 862, 911, 978, 1111
Bst6I CTCTTC 3 cut(s) 783, 990, 1369
BstBAI YACGTR 1 cut(s) 983
BstC8I GCNNGC 4 cut(s) 604, 622, 917, 945
BstDEI CTNAG 3 cut(s) 86, 103, 1281
BstDSI CCRYGG 4 cut(s) 380, 399, 894, 1317
BstFNI CGCG 3 cut(s) 117, 255, 401
BstH2I RGCGCY 2 cut(s) 267, 300
BstHHI GCGC 4 cut(s) 266, 299, 422, 611
BstKTI GATC 6 cut(s) 22, 450, 541, 666, 1215, 1412
BstMAI GTCTC 5 cut(s) 263, 721, 847, 992, 1100
BstMBI GATC 6 cut(s) 19, 447, 538, 663, 1212, 1409
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 9 cut(s) 261, 287, 296, 395, 608, 617, 706, 814, 1343
BstNSI RCATGY 1 cut(s) 1071
BstSCI CCNGG 1 cut(s) 511
BstSLI GKGCMC 1 cut(s) 1128
BstUI CGCG 3 cut(s) 117, 255, 401
BstV1I GCAGC 2 cut(s) 593, 1346
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 9 cut(s) 234, 398, 700, 709, 823, 919, 1061, 1288, 1316
BtgI CCRYGG 4 cut(s) 380, 399, 894, 1317
BtgZI GCGATG 1 cut(s) 756
BtrI CACGTC 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 916
Cac8I GCNNGC 4 cut(s) 604, 622, 917, 945
CaiI CAGNNNCTG 1 cut(s) 767
CfoI GCGC 4 cut(s) 266, 299, 422, 611
Cfr10I RCCGGY 1 cut(s) 943
Cfr13I GGNCC 3 cut(s) 707, 1286, 1314
Cfr42I CCGCGG 1 cut(s) 402
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 314
CviAII CATG 8 cut(s) 41, 82, 205, 381, 502, 1026, 1068, 1318
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 3 cut(s) 86, 103, 1281
DpnI GATC 6 cut(s) 21, 449, 540, 665, 1214, 1411
DpnII GATC 6 cut(s) 19, 447, 538, 663, 1212, 1409
DraIII CACNNNGTG 1 cut(s) 1029
DrdI GACNNNNNNGTC 1 cut(s) 865
DseDI GACNNNNNNGTC 1 cut(s) 865
EaeI YGGCCR 2 cut(s) 396, 698
Eam1104I CTCTTC 3 cut(s) 783, 990, 1369
EarI CTCTTC 3 cut(s) 783, 990, 1369
EciI GGCGGA 1 cut(s) 962
Eco130I CCWWGG 2 cut(s) 380, 1317
Eco147I AGGCCT 1 cut(s) 823
Eco31I GGTCTC 3 cut(s) 263, 721, 992
Eco32I GATATC 1 cut(s) 1116
Eco57I CTGAAG 1 cut(s) 807
Eco72I CACGTG 1 cut(s) 983
EcoRI GAATTC 1 cut(s) 516
EcoRV GATATC 1 cut(s) 1116
EcoT14I CCWWGG 2 cut(s) 380, 1317
EcoT22I ATGCAT 1 cut(s) 1268
ErhI CCWWGG 2 cut(s) 380, 1317
Esp3I CGTCTC 2 cut(s) 847, 1100
FaeI CATG 8 cut(s) 44, 85, 208, 384, 505, 1029, 1071, 1321
FaqI GGGAC 1 cut(s) 1084
FatI CATG 8 cut(s) 40, 81, 204, 380, 501, 1025, 1067, 1317
FauI CCCGC 1 cut(s) 1079
Fnu4HI GCNGC 6 cut(s) 135, 279, 399, 607, 941, 1335
Fsp4HI GCNGC 6 cut(s) 135, 279, 399, 607, 941, 1335
FspBI CTAG 1 cut(s) 50
FspI TGCGCA 1 cut(s) 421
GlaI GCGC 4 cut(s) 265, 298, 421, 610
GluI GCNGC 6 cut(s) 135, 279, 399, 607, 941, 1335
GsaI CCCAGC 2 cut(s) 628, 635
HaeII RGCGCY 2 cut(s) 267, 300
HaeIII GGCC 9 cut(s) 234, 398, 700, 709, 823, 919, 1061, 1288, 1316
HapII CCGG 4 cut(s) 512, 944, 969, 1142
HgaI GACGC 1 cut(s) 106
HhaI GCGC 4 cut(s) 266, 299, 422, 611
Hin1II CATG 8 cut(s) 44, 85, 208, 384, 505, 1029, 1071, 1321
Hin6I GCGC 4 cut(s) 264, 297, 420, 609
HinP1I GCGC 4 cut(s) 264, 297, 420, 609
HindIII AAGCTT 1 cut(s) 1172
HinfI GANTC 8 cut(s) 411, 596, 671, 682, 764, 791, 965, 1078
HpaII CCGG 4 cut(s) 512, 944, 969, 1142
HphI GGTGA 3 cut(s) 229, 1123, 1232
Hpy166II GTNNAC 3 cut(s) 121, 574, 1149
Hpy188I TCNGA 9 cut(s) 13, 152, 229, 546, 595, 693, 763, 1300, 1369
Hpy188III TCNNGA 5 cut(s) 23, 430, 580, 1119, 1142
Hpy8I GTNNAC 3 cut(s) 121, 574, 1149
Hpy99I CGWCG 2 cut(s) 233, 1067
HpyAV CCTTC 7 cut(s) 283, 382, 570, 610, 944, 1003, 1321
HpyCH4III ACNGT 5 cut(s) 148, 862, 911, 978, 1111
HpyCH4IV ACGT 2 cut(s) 123, 982
HpyCH4V TGCA 5 cut(s) 17, 357, 746, 798, 1266
HpyF10VI GCNNNNNNNGC 9 cut(s) 261, 287, 296, 395, 608, 617, 706, 814, 1343
HpyF3I CTNAG 3 cut(s) 86, 103, 1281
HpySE526I ACGT 2 cut(s) 123, 982
Hsp92II CATG 8 cut(s) 44, 85, 208, 384, 505, 1029, 1071, 1321
HspAI GCGC 4 cut(s) 264, 297, 420, 609
Kpn2I TCCGGA 1 cut(s) 1141
KroI GCCGGC 1 cut(s) 943
KroNI GCCGGC 1 cut(s) 945
KspI CCGCGG 1 cut(s) 402
Kzo9I GATC 6 cut(s) 19, 447, 538, 663, 1212, 1409
LguI GCTCTTC 1 cut(s) 1369
LmnI GCTCC 3 cut(s) 168, 382, 403
Lsp1109I GCAGC 2 cut(s) 593, 1346
LweI GCATC 6 cut(s) 4, 366, 733, 1253, 1275, 1304
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 123, 982
MaeIII GTNAC 7 cut(s) 124, 856, 978, 1021, 1220, 1276, 1418
MalI GATC 6 cut(s) 21, 449, 540, 665, 1214, 1411
MboI GATC 6 cut(s) 19, 447, 538, 663, 1212, 1409
MhlI GDGCHC 4 cut(s) 408, 551, 1034, 1128
MluCI AATT 2 cut(s) 516, 1385
MluI ACGCGT 1 cut(s) 115
MlyI GAGTC 4 cut(s) 665, 691, 800, 1072
MmeI TCCRAC 1 cut(s) 252
Mph1103I ATGCAT 1 cut(s) 1268
MreI CGCCGGCG 1 cut(s) 943
MroI TCCGGA 1 cut(s) 1141
MroNI GCCGGC 1 cut(s) 943
MseI TTAA 1 cut(s) 1178
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 4 cut(s) 512, 944, 969, 1142
MspR9I CCNGG 1 cut(s) 513
MvnI CGCG 3 cut(s) 117, 255, 401
MwoI GCNNNNNNNGC 9 cut(s) 261, 287, 296, 395, 608, 617, 706, 814, 1343
NaeI GCCGGC 1 cut(s) 945
NciI CCSGG 1 cut(s) 513
NcoI CCATGG 2 cut(s) 380, 1317
NdeII GATC 6 cut(s) 19, 447, 538, 663, 1212, 1409
NgoMIV GCCGGC 1 cut(s) 943
NlaIII CATG 8 cut(s) 44, 85, 208, 384, 505, 1029, 1071, 1321
NlaIV GGNNCC 3 cut(s) 434, 690, 1287
NmeAIII GCCGAG 4 cut(s) 268, 292, 637, 1314
NmuCI GTSAC 5 cut(s) 124, 856, 978, 1021, 1220
NsbI TGCGCA 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 1268
NspI RCATGY 1 cut(s) 1071
PceI AGGCCT 1 cut(s) 823
PciSI GCTCTTC 1 cut(s) 1369
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 945
PfeI GAWTC 4 cut(s) 411, 596, 764, 965
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 6 cut(s) 136, 280, 400, 608, 942, 1336
PleI GAGTC 4 cut(s) 665, 690, 799, 1072
PmaCI CACGTG 1 cut(s) 983
PmlI CACGTG 1 cut(s) 983
PpsI GAGTC 4 cut(s) 665, 690, 799, 1072
Ppu21I YACGTR 1 cut(s) 983
PspCI CACGTG 1 cut(s) 983
PspFI CCCAGC 2 cut(s) 624, 631
PspN4I GGNNCC 3 cut(s) 434, 690, 1287
PspPI GGNCC 3 cut(s) 707, 1286, 1314
PsrI GAACNNNNNNTAC 2 cut(s) 629, 661
PstNI CAGNNNCTG 1 cut(s) 767
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SacII CCGCGG 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 1369
SaqAI TTAA 1 cut(s) 1178
SatI GCNGC 6 cut(s) 135, 279, 399, 607, 941, 1335
Sau3AI GATC 6 cut(s) 19, 447, 538, 663, 1212, 1409
Sau96I GGNCC 3 cut(s) 707, 1286, 1314
SchI GAGTC 4 cut(s) 665, 691, 800, 1072
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 4 cut(s) 408, 551, 1034, 1128
SfaNI GCATC 6 cut(s) 4, 366, 733, 1253, 1275, 1304
SfiI GGCCNNNNNGGCC 1 cut(s) 706
Sfr303I CCGCGG 1 cut(s) 402
SgrAI CRCCGGYG 1 cut(s) 943
SgrBI CCGCGG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 1103
SmoI CTYRAG 1 cut(s) 1103
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 2 cut(s) 516, 1385
SseBI AGGCCT 1 cut(s) 823
SspI AATATT 1 cut(s) 1378
SspMI CTAG 1 cut(s) 50
StuI AGGCCT 1 cut(s) 823
StyD4I CCNGG 1 cut(s) 511
StyI CCWWGG 2 cut(s) 380, 1317
TaaI ACNGT 5 cut(s) 148, 862, 911, 978, 1111
TaiI ACGT 2 cut(s) 126, 985
TaqI TCGA 7 cut(s) 216, 249, 344, 446, 674, 1269, 1392
TasI AATT 2 cut(s) 516, 1385
TauI GCSGC 4 cut(s) 137, 281, 401, 943
TfiI GAWTC 4 cut(s) 411, 596, 764, 965
Tru1I TTAA 1 cut(s) 1178
Tru9I TTAA 1 cut(s) 1178
TscAI CASTG 1 cut(s) 916
TseFI GTSAC 5 cut(s) 124, 856, 978, 1021, 1220
TseI GCWGC 2 cut(s) 606, 1334
Tsp45I GTSAC 5 cut(s) 124, 856, 978, 1021, 1220
TspDTI ATGAA 3 cut(s) 490, 1319, 1378
TspGWI ACGGA 2 cut(s) 301, 423
TspRI CASTG 1 cut(s) 916
XapI RAATTY 2 cut(s) 516, 1385
XceI RCATGY 1 cut(s) 1071
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.