AT2G23260

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011977
Physical Location & Seq
Reverse (-)
9899927 .. 9901439
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23260.1

Sequence Viewer

Length: 1371 bp
ATGGGCAGTAGTGAGGGTCAAGAAACACATGTCCTAATGGTAACACTACCATTCCAAGGTCACATCAATCCAATGCTCAAACTCGCAAAACATCTCTCGTTATCATCAAAGAACCTACACATCAATCTCGCCACTATTGAGTCAGCCCGTGATCTCCTCTCCACCGTAGAAAAACCTCGTTATCCGGTGGACCTCGTGTTCTTCTCCGATGGTCTACCTAAAGAAGATCCAAAGGCCCCTGAAACTCTTTTGAAGTCATTGAATAAAGTCGGAGCCATGAACTTGTCTAAAATCATCGAAGAAAAGAGATACTCTTGTATCATCTCTTCGCCTTTTACTCCATGGGTTCCAGCTGTTGCAGCCTCTCATAACATCTCTTGTGCAATACTTTGGATCCAAGCTTGTGGAGCTTACTCGGTTTATTACCGTTACTACATGAAGACAAACTCTTTCCCTGATCTTGAAGATCTGAATCAAACGGTGGAGTTACCAGCTTTACCATTGTTGGAAGTTCGAGATCTTCCATCGTTTATGTTACCTTCTGGTGGTGCTCACTTCTATAATCTAATGGCGGAATTTGCAGATTGTTTGAGGTATGTGAAATGGGTTTTGGTTAATTCATTCTATGAACTCGAATCAGAGATAATCGAATCGATGGCTGATTTAAAACCTGTAATTCCAATTGGTCCTCTGGTTTCTCCATTTCTGTTGGGCGATGGTGAGGAGGAAACCCTAGACGGTAAAAACCTAGATTTTTGTAAATCTGATGATTGTTGTATGGAGTGGCTTGACAAGCAAGCTAGGTCTTCTGTTGTGTACATATCTTTCGGAAGTATGCTCGAAACATTGGAGAATCAGGTCGAGACCATAGCGAAGGCGCTGAAGAACAGAGGACTTCCATTTCTTTGGGTGATAAGGCCAAAGGAGAAAGCCCAAAACGTTGCTGTTTTGCAGGAGATGGTGAAAGAAGGACAAGGGGTTGTTCTCGAGTGGAGTCCACAAGAGAAGATTTTGAGCCACGAGGCAATCTCTTGTTTTGTCACGCATTGCGGCTGGAACTCGACTATGGAGACGGTGGTGGCTGGTGTTCCTGTGGTAGCGTACCCTAGCTGGACGGATCAGCCCATTGACGCGCGGTTGCTTGTTGATGTGTTTGGAATCGGAGTAAGGATGAGGAATGACAGTGTCGATGGCGAGCTTAAGGTCGAAGAAGTAGAAAGATGCATTGAGGCCGTGACGGAGGGACCCGCTGCCGTGGATATAAGAAGGAGAGCGGCGGAGCTAAAGCGCGTGGCGAGATTGGCGTTGGCACCTGGTGGATCTTCGACACGGAATTTAGACTTGTTCATTAGTGATATCACAATCGCCTAA

Protein Analysis

456

Amino Acids

50.71

Weight (kDa)

5.03

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 267 - 386 1.3e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23210 AT2G23250 AT2G23260
fragaria_vesca FvH4_1g16840
malus_domestica MD02G1179400.v1.1
prunus_persica Prupe.6G228400_v2.0.a1
pyrus_communis pycom02g14550
rosa_chinensis RchiOBHm_Chr2g0106741
rosa_laevigata RLG00000017537
rosa_multiflora Rmu_sc0004000.1_g000018 Rmu_sc0004000.1_g000020
rosa_roxburghii Rroxscaffold_2G00136810
rosa_rugosa Rorug02G0138400
rosa_samantha Rh2AG189300 Rh2BG200700 Rh2CG194300 Rh2DG195500
rosa_wichuraiana Rw2G014890 Rw2G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1309
AccBSI CCGCTC 1 cut(s) 1274
AccI GTMKAC 1 cut(s) 214
AccII CGCG 3 cut(s) 1133, 1135, 1290
AciI CCGC 6 cut(s) 572, 1050, 1135, 1248, 1274, 1277
AclI AACGTT 1 cut(s) 939
AclWI GGATC 5 cut(s) 221, 388, 401, 1125, 1327
AcsI RAATTY 2 cut(s) 575, 1333
AcuI CTGAAG 1 cut(s) 902
AdeI CACNNNGTG 1 cut(s) 1316
AfaI GTAC 2 cut(s) 818, 1103
AfiI CCNNNNNNNGG 2 cut(s) 56, 545
AflII CTTAAG 1 cut(s) 1199
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 3 cut(s) 253, 262, 464
AjnI CCWGG 1 cut(s) 1312
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 8 cut(s) 353, 401, 410, 494, 800, 1110, 1198, 1282
AluI AGCT 8 cut(s) 353, 401, 410, 494, 800, 1110, 1198, 1282
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 2 cut(s) 857, 1064
AlwI GGATC 5 cut(s) 221, 388, 401, 1125, 1327
Ama87I CYCGRG 1 cut(s) 986
AoxI GGCC 3 cut(s) 234, 917, 1230
ApeKI GCWGC 2 cut(s) 359, 1250
ApoI RAATTY 2 cut(s) 575, 1333
AspLEI GCGC 3 cut(s) 880, 1135, 1290
AspS9I GGNCC 4 cut(s) 190, 235, 686, 1244
AsuHPI GGTGA 3 cut(s) 731, 922, 973
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 3 cut(s) 190, 686, 1244
BaeI ACNNNNGTAYC 4 cut(s) 301, 301, 334, 334
BamHI GGATCC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 1309
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
BauI CACGAG 2 cut(s) 194, 1019
BbsI GAAGAC 2 cut(s) 446, 798
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 2 cut(s) 371, 1237
BccI CCATC 6 cut(s) 203, 532, 649, 710, 952, 1184
BceAI ACGGC 2 cut(s) 1217, 1238
BciT130I CCWGG 1 cut(s) 1314
BcoDI GTCTC 2 cut(s) 857, 1064
BfaI CTAG 4 cut(s) 734, 749, 801, 1107
BfoI RGCGCY 1 cut(s) 881
BfrI CTTAAG 1 cut(s) 1199
BglII AGATCT 2 cut(s) 466, 517
BisI GCNGC 4 cut(s) 360, 1051, 1251, 1275
BlsI GCNGC 4 cut(s) 361, 1052, 1252, 1276
Bme1390I CCNGG 1 cut(s) 1314
Bme18I GGWCC 3 cut(s) 190, 686, 1244
BmeT110I CYCGRG 1 cut(s) 986
BmgT120I GGNCC 4 cut(s) 190, 235, 686, 1244
BmiI GGNNCC 7 cut(s) 237, 274, 348, 395, 1245, 1246, 1311
BmrFI CCNGG 1 cut(s) 1314
BmsI GCATC 1 cut(s) 1211
BpiI GAAGAC 2 cut(s) 446, 798
BplI GAGNNNNNCTC 2 cut(s) 1013, 1045
Bsa29I ATCGAT 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 3 cut(s) 55, 341, 1254
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 545
Bse3DI GCAATG 1 cut(s) 1045
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 1314
BseCI ATCGAT 1 cut(s) 653
BseDI CCNNGG 3 cut(s) 55, 341, 1254
BseGI GGATG 1 cut(s) 1176
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 56, 545
BseMI GCAATG 1 cut(s) 1045
BseRI GAGGAG 2 cut(s) 146, 737
BseXI GCAGC 2 cut(s) 371, 1237
Bsh1236I CGCG 3 cut(s) 1133, 1135, 1290
BshFI GGCC 3 cut(s) 236, 919, 1232
BshNI GGYRCC 1 cut(s) 1309
BshVI ATCGAT 1 cut(s) 653
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 986
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 1257
BslI CCNNNNNNNGG 2 cut(s) 56, 545
BsmAI GTCTC 2 cut(s) 857, 1064
BsmBI CGTCTC 1 cut(s) 1064
BsmFI GGGAC 1 cut(s) 1257
BsnI GGCC 3 cut(s) 236, 919, 1232
Bso31I GGTCTC 1 cut(s) 857
BsoBI CYCGRG 1 cut(s) 986
Bsp1286I GDGCHC 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 8 cut(s) 151, 226, 393, 457, 466, 517, 1117, 1319
Bsp19I CCATGG 1 cut(s) 341
BspACI CCGC 6 cut(s) 572, 1050, 1135, 1248, 1274, 1277
BspANI GGCC 3 cut(s) 236, 919, 1232
BspDI ATCGAT 1 cut(s) 653
BspFNI CGCG 3 cut(s) 1133, 1135, 1290
BspLI GGNNCC 7 cut(s) 237, 274, 348, 395, 1245, 1246, 1311
BspPI GGATC 5 cut(s) 221, 388, 401, 1125, 1327
BspT107I GGYRCC 1 cut(s) 1309
BspTI CTTAAG 1 cut(s) 1199
BspTNI GGTCTC 1 cut(s) 857
BsrBI CCGCTC 1 cut(s) 1274
BsrDI GCAATG 1 cut(s) 1045
BsrGI TGTACA 1 cut(s) 816
BssECI CCNNGG 3 cut(s) 55, 341, 1254
BssMI GATC 8 cut(s) 151, 226, 393, 457, 466, 517, 1117, 1319
BssSI CACGAG 2 cut(s) 194, 1019
BssT1I CCWWGG 2 cut(s) 55, 341
Bst2BI CACGAG 2 cut(s) 194, 1019
Bst2UI CCWGG 1 cut(s) 1314
Bst4CI ACNGT 6 cut(s) 166, 428, 481, 740, 1075, 1184
Bst6I CTCTTC 1 cut(s) 331
BstAFI CTTAAG 1 cut(s) 1199
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 2 cut(s) 798, 1196
BstDSI CCRYGG 2 cut(s) 341, 1254
BstF5I GGATG 1 cut(s) 1176
BstFNI CGCG 3 cut(s) 1133, 1135, 1290
BstH2I RGCGCY 1 cut(s) 881
BstHHI GCGC 3 cut(s) 880, 1135, 1290
BstKTI GATC 8 cut(s) 154, 229, 396, 460, 469, 520, 1120, 1322
BstMAI GTCTC 2 cut(s) 857, 1064
BstMBI GATC 8 cut(s) 151, 226, 393, 457, 466, 517, 1117, 1319
BstMWI GCNNNNNNNGC 5 cut(s) 359, 407, 578, 793, 1301
BstNI CCWGG 1 cut(s) 1314
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 1312
BstUI CGCG 3 cut(s) 1133, 1135, 1290
BstV1I GCAGC 2 cut(s) 371, 1237
BstV2I GAAGAC 2 cut(s) 446, 798
BstX2I RGATCY 5 cut(s) 226, 393, 466, 517, 1319
BstXI CCANNNNNNTGG 2 cut(s) 404, 906
BstYI RGATCY 5 cut(s) 226, 393, 466, 517, 1319
Bsu15I ATCGAT 1 cut(s) 653
BsuRI GGCC 3 cut(s) 236, 919, 1232
BsuTUI ATCGAT 1 cut(s) 653
BtgI CCRYGG 2 cut(s) 341, 1254
BtgZI GCGATG 1 cut(s) 729
BtsCI GGATG 1 cut(s) 1176
BtsIMutI CAGTG 1 cut(s) 1189
Cac8I GCNNGC 2 cut(s) 798, 1196
CfoI GCGC 3 cut(s) 880, 1135, 1290
Cfr13I GGNCC 4 cut(s) 190, 235, 686, 1244
ClaI ATCGAT 1 cut(s) 653
CseI GACGC 1 cut(s) 1139
CsiI ACCWGGT 1 cut(s) 1312
Csp6I GTAC 2 cut(s) 817, 1102
CviAII CATG 4 cut(s) 29, 277, 342, 436
CviQI GTAC 2 cut(s) 817, 1102
DpnI GATC 8 cut(s) 153, 228, 395, 459, 468, 519, 1119, 1321
DpnII GATC 8 cut(s) 151, 226, 393, 457, 466, 517, 1117, 1319
DraI TTTAAA 1 cut(s) 666
DraIII CACNNNGTG 1 cut(s) 1316
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
EciI GGCGGA 2 cut(s) 587, 1292
Eco130I CCWWGG 2 cut(s) 55, 341
Eco31I GGTCTC 1 cut(s) 857
Eco32I GATATC 1 cut(s) 1357
Eco47I GGWCC 3 cut(s) 190, 686, 1244
Eco57I CTGAAG 1 cut(s) 902
Eco88I CYCGRG 1 cut(s) 986
EcoO109I RGGNCCY 2 cut(s) 235, 1244
EcoRII CCWGG 1 cut(s) 1312
EcoRV GATATC 1 cut(s) 1357
EcoT14I CCWWGG 2 cut(s) 55, 341
EcoT22I ATGCAT 1 cut(s) 1226
ErhI CCWWGG 2 cut(s) 55, 341
Esp3I CGTCTC 1 cut(s) 1064
FaeI CATG 4 cut(s) 32, 280, 345, 439
FaqI GGGAC 1 cut(s) 1257
FatI CATG 4 cut(s) 28, 276, 341, 435
FauI CCCGC 1 cut(s) 1255
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 360, 1051, 1251, 1275
FokI GGATG 1 cut(s) 1183
Fsp4HI GCNGC 4 cut(s) 360, 1051, 1251, 1275
FspBI CTAG 4 cut(s) 734, 749, 801, 1107
GlaI GCGC 3 cut(s) 879, 1134, 1289
GluI GCNGC 4 cut(s) 360, 1051, 1251, 1275
HaeII RGCGCY 1 cut(s) 881
HaeIII GGCC 3 cut(s) 236, 919, 1232
HapII CCGG 1 cut(s) 185
HgaI GACGC 1 cut(s) 1139
HhaI GCGC 3 cut(s) 880, 1135, 1290
Hin1II CATG 4 cut(s) 32, 280, 345, 439
Hin6I GCGC 3 cut(s) 878, 1133, 1288
HinP1I GCGC 3 cut(s) 878, 1133, 1288
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 7 cut(s) 140, 472, 635, 650, 853, 994, 1158
HpaII CCGG 1 cut(s) 185
HphI GGTGA 3 cut(s) 731, 922, 973
Hpy166II GTNNAC 4 cut(s) 190, 215, 817, 998
Hpy188I TCNGA 7 cut(s) 208, 272, 471, 640, 766, 830, 1163
Hpy188III TCNNGA 5 cut(s) 20, 461, 515, 862, 986
Hpy8I GTNNAC 4 cut(s) 190, 215, 817, 998
HpyAV CCTTC 4 cut(s) 549, 868, 962, 1260
HpyCH4III ACNGT 6 cut(s) 166, 428, 481, 740, 1075, 1184
HpyCH4IV ACGT 1 cut(s) 939
HpyCH4V TGCA 5 cut(s) 359, 383, 581, 952, 1224
HpyF10VI GCNNNNNNNGC 5 cut(s) 359, 407, 578, 793, 1301
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 4 cut(s) 32, 280, 345, 439
HspAI GCGC 3 cut(s) 878, 1133, 1288
KflI GGGWCCC 1 cut(s) 1244
Kzo9I GATC 8 cut(s) 151, 226, 393, 457, 466, 517, 1117, 1319
LmnI GCTCC 3 cut(s) 272, 407, 1279
Lsp1109I GCAGC 2 cut(s) 371, 1237
LweI GCATC 1 cut(s) 1211
MabI ACCWGGT 1 cut(s) 1312
MaeI CTAG 4 cut(s) 734, 749, 801, 1107
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 7 cut(s) 40, 59, 428, 486, 534, 1039, 1234
MalI GATC 8 cut(s) 153, 228, 395, 459, 468, 519, 1119, 1321
MbiI CCGCTC 1 cut(s) 1274
MboI GATC 8 cut(s) 151, 226, 393, 457, 466, 517, 1117, 1319
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 5 cut(s) 226, 393, 466, 517, 1319
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 5 cut(s) 575, 616, 675, 681, 1333
MlyI GAGTC 2 cut(s) 149, 1003
MmeI TCCRAC 2 cut(s) 250, 486
Mph1103I ATGCAT 1 cut(s) 1226
MseI TTAA 3 cut(s) 615, 665, 1200
MspA1I CMGCKG 2 cut(s) 353, 1250
MspCI CTTAAG 1 cut(s) 1199
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 1314
MunI CAATTG 1 cut(s) 681
MvaI CCWGG 1 cut(s) 1314
MvnI CGCG 3 cut(s) 1133, 1135, 1290
MwoI GCNNNNNNNGC 5 cut(s) 359, 407, 578, 793, 1301
NcoI CCATGG 1 cut(s) 341
NdeII GATC 8 cut(s) 151, 226, 393, 457, 466, 517, 1117, 1319
NlaIII CATG 4 cut(s) 32, 280, 345, 439
NlaIV GGNNCC 7 cut(s) 237, 274, 348, 395, 1245, 1246, 1311
NmuCI GTSAC 3 cut(s) 59, 1039, 1234
NsiI ATGCAT 1 cut(s) 1226
NspI RCATGY 1 cut(s) 32
PaeR7I CTCGAG 1 cut(s) 986
PciI ACATGT 1 cut(s) 28
PfeI GAWTC 5 cut(s) 472, 635, 650, 853, 1158
PflFI GACNNNGTC 1 cut(s) 1184
PkrI GCNGC 4 cut(s) 361, 1052, 1252, 1276
PleI GAGTC 2 cut(s) 148, 1002
PpsI GAGTC 2 cut(s) 148, 1002
PpuMI RGGWCCY 1 cut(s) 1244
PscI ACATGT 1 cut(s) 28
Psp1406I AACGTT 1 cut(s) 939
Psp5II RGGWCCY 1 cut(s) 1244
Psp6I CCWGG 1 cut(s) 1312
PspGI CCWGG 1 cut(s) 1312
PspN4I GGNNCC 7 cut(s) 237, 274, 348, 395, 1245, 1246, 1311
PspPI GGNCC 4 cut(s) 190, 235, 686, 1244
PspPPI RGGWCCY 1 cut(s) 1244
PsuI RGATCY 5 cut(s) 226, 393, 466, 517, 1319
PsyI GACNNNGTC 1 cut(s) 1184
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 2 cut(s) 818, 1103
RsaNI GTAC 2 cut(s) 817, 1102
SaqAI TTAA 3 cut(s) 615, 665, 1200
SatI GCNGC 4 cut(s) 360, 1051, 1251, 1275
Sau3AI GATC 8 cut(s) 151, 226, 393, 457, 466, 517, 1117, 1319
Sau96I GGNCC 4 cut(s) 190, 235, 686, 1244
SchI GAGTC 2 cut(s) 149, 1003
ScrFI CCNGG 1 cut(s) 1314
SduI GDGCHC 1 cut(s) 553
SexAI ACCWGGT 1 cut(s) 1312
SfaNI GCATC 1 cut(s) 1211
Sfr274I CTCGAG 1 cut(s) 986
SinI GGWCC 3 cut(s) 190, 686, 1244
SlaI CTCGAG 1 cut(s) 986
SmlI CTYRAG 2 cut(s) 986, 1199
SmoI CTYRAG 2 cut(s) 986, 1199
Sse9I AATT 5 cut(s) 575, 616, 675, 681, 1333
SsiI CCGC 6 cut(s) 572, 1050, 1135, 1248, 1274, 1277
SspMI CTAG 4 cut(s) 734, 749, 801, 1107
StyD4I CCNGG 1 cut(s) 1312
StyI CCWWGG 2 cut(s) 55, 341
TaaI ACNGT 6 cut(s) 166, 428, 481, 740, 1075, 1184
TaiI ACGT 1 cut(s) 942
TasI AATT 5 cut(s) 575, 616, 675, 681, 1333
TatI WGTACW 1 cut(s) 816
TauI GCSGC 2 cut(s) 1053, 1277
TfiI GAWTC 5 cut(s) 472, 635, 650, 853, 1158
Tru1I TTAA 3 cut(s) 615, 665, 1200
Tru9I TTAA 3 cut(s) 615, 665, 1200
TscAI CASTG 1 cut(s) 1189
TseFI GTSAC 3 cut(s) 59, 1039, 1234
TseI GCWGC 2 cut(s) 359, 1250
Tsp45I GTSAC 3 cut(s) 59, 1039, 1234
TspDTI ATGAA 5 cut(s) 293, 452, 609, 642, 1336
TspGWI ACGGA 3 cut(s) 1130, 1253, 1345
TspRI CASTG 1 cut(s) 1189
Tth111I GACNNNGTC 1 cut(s) 1184
Vha464I CTTAAG 1 cut(s) 1199
VpaK11BI GGWCC 3 cut(s) 190, 686, 1244
XapI RAATTY 2 cut(s) 575, 1333
XceI RCATGY 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 214
XspI CTAG 4 cut(s) 734, 749, 801, 1107
Zsp2I ATGCAT 1 cut(s) 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.