AT2G24940

Belongs to the cytochrome b5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017145
Physical Location & Seq
Forward (+)
10609417 .. 10609900
484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24940.1

Sequence Viewer

Length: 303 bp
ATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGCACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTGTTCGATGTCACCACCGGAAAATCCTTCTACGGCTCCGGAGGCGATTACTCGATGTTCGCCGGAAAAGACGCGAGCAGAGCTTTGGGTAAGATGAGTAAGAACGAAGAAGATGTGTCTCCTTCTCTTGAAGGTCTCACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCTGTCGTTGGCCGTGTTGTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0012505 GO:0016020 GO:0020037 GO:0044424 GO:0044444 GO:0044464 GO:0046906 GO:0048037 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

100

Amino Acids

11.03

Weight (kDa)

4.81

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 4 - 79 1.7e-13 Cytochrome b5-like Heme/Steroid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24940
fragaria_vesca FvH4_2g41261
malus_domestica MD15G1042800.v1.1
prunus_persica Prupe.1G396100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0299251
rosa_laevigata RLG00000011449
rosa_multiflora Rmu_sc0001434.1_g000006
rosa_roxburghii Rroxscaffold_7G00168870
rosa_rugosa Rorug06G0286600
rosa_samantha Rh6AG397900 Rh6CG412500 Rh6DG399200
rosa_wichuraiana Rw6G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccII CGCG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 119
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 2 cut(s) 5, 260
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 212, 266
AluBI AGCT 3 cut(s) 22, 164, 269
AluI AGCT 3 cut(s) 22, 164, 269
Alw26I GTCTC 3 cut(s) 204, 221, 248
Aor13HI TCCGGA 1 cut(s) 119
AoxI GGCC 2 cut(s) 76, 286
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 5, 260
AsuHPI GGTGA 1 cut(s) 85
BanI GGYRCC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 31
BceAI ACGGC 4 cut(s) 52, 63, 130, 273
BciVI GTATCC 1 cut(s) 285
BcoDI GTCTC 3 cut(s) 204, 221, 248
BfuI GTATCC 1 cut(s) 285
BisI GCNGC 1 cut(s) 20
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 21
BmiI GGNNCC 2 cut(s) 40, 118
Bpu1102I GCTNAGC 1 cut(s) 23
BsaI GGTCTC 2 cut(s) 221, 248
BsaWI WCCGGW 2 cut(s) 98, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseAI TCCGGA 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 2 cut(s) 78, 288
BshNI GGYRCC 1 cut(s) 38
BsiSI CCGG 3 cut(s) 99, 120, 144
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 3 cut(s) 204, 221, 248
BsnI GGCC 2 cut(s) 78, 288
Bso31I GGTCTC 2 cut(s) 221, 248
Bsp13I TCCGGA 1 cut(s) 119
Bsp143I GATC 2 cut(s) 57, 231
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 1 cut(s) 12
BspANI GGCC 2 cut(s) 78, 288
BspCNI CTCAG 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 119
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 40, 118
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 2 cut(s) 221, 248
BssMI GATC 2 cut(s) 57, 231
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 4 cut(s) 23, 222, 270, 300
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 2 cut(s) 60, 234
BstMAI GTCTC 3 cut(s) 204, 221, 248
BstMBI GATC 2 cut(s) 57, 231
BstMWI GCNNNNNNNGC 2 cut(s) 123, 161
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 31
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 2 cut(s) 78, 288
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 157
CseI GACGC 1 cut(s) 161
CviJI RGCY 8 cut(s) 22, 27, 55, 78, 117, 164, 269, 288
CviKI_1 RGCY 8 cut(s) 22, 27, 55, 78, 117, 164, 269, 288
DdeI CTNAG 4 cut(s) 23, 222, 270, 300
DpnI GATC 2 cut(s) 59, 233
DpnII GATC 2 cut(s) 57, 231
EaeI YGGCCR 1 cut(s) 286
Eco31I GGTCTC 2 cut(s) 221, 248
EcoRI GAATTC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
HaeIII GGCC 2 cut(s) 78, 288
HapII CCGG 3 cut(s) 99, 120, 144
HgaI GACGC 1 cut(s) 161
HinfI GANTC 1 cut(s) 47
HpaII CCGG 3 cut(s) 99, 120, 144
HphI GGTGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 120, 209
Hpy99I CGWCG 2 cut(s) 47, 68
HpyAV CCTTC 3 cut(s) 118, 206, 213
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 161
HpyF3I CTNAG 4 cut(s) 23, 222, 270, 300
HpySE526I ACGT 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 119
Kzo9I GATC 2 cut(s) 57, 231
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 112, 133, 157, 291
Lsp1109I GCAGC 1 cut(s) 31
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 59, 233
MboI GATC 2 cut(s) 57, 231
MboII GAAGA 2 cut(s) 200, 203
MluCI AATT 2 cut(s) 5, 260
MnlI CCTC 1 cut(s) 116
MroI TCCGGA 1 cut(s) 119
MseI TTAA 1 cut(s) 243
MspI CCGG 3 cut(s) 99, 120, 144
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 123, 161
NdeII GATC 2 cut(s) 57, 231
NlaIV GGNNCC 2 cut(s) 40, 118
NmuCI GTSAC 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 40, 118
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 57, 231
SetI ASST 5 cut(s) 24, 66, 166, 217, 271
SgeI CNNG 9 cut(s) 92, 111, 132, 145, 156, 166, 168, 221, 290
Sse9I AATT 2 cut(s) 5, 260
SsiI CCGC 1 cut(s) 12
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 87, 134
TasI AATT 2 cut(s) 5, 260
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 91
TspRI CASTG 1 cut(s) 226
XapI RAATTY 2 cut(s) 5, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.