Prupe.1G396100_v2.0.a1

Belongs to the cytochrome b5 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
35138652 .. 35139210
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G396100.1

Sequence Viewer

Length: 303 bp
ATGGAGCTAACAGCACAGCAGCTGATCCAATACAACGGCACCGACCCATCAAAGCCGATATACGTGGCACTGAAAGGTCGCGTCTTTGACGTGACGGACGGCAAGTCGTTTTACGGGCCTGGAGGACCGTACGCGATGTTCGCGGGCAAGGACGCCAGCAGAGCTCTGGCGAAGATGACCAAGAACGAAGAAGACATCACTGCCTCCCTCGACGGCCTCTCGGAGAAGGAGATCGGCGTCCTCACCGACTGGGAGAAGAAGTTCGAAGCTAAGTACCCAGTTGTTGGCCGTGTTGTTTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

10.94

Weight (kDa)

5.4

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24940
fragaria_vesca FvH4_2g41261
malus_domestica MD15G1042800.v1.1
prunus_persica Prupe.1G396100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0299251
rosa_laevigata RLG00000011449
rosa_multiflora Rmu_sc0001434.1_g000006
rosa_roxburghii Rroxscaffold_7G00168870
rosa_rugosa Rorug06G0286600
rosa_samantha Rh6AG397900 Rh6CG412500 Rh6DG399200
rosa_wichuraiana Rw6G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 284
AccII CGCG 3 cut(s) 81, 134, 143
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 286
AcyI GRCGYC 2 cut(s) 153, 237
AfaI GTAC 2 cut(s) 131, 275
AfiI CCNNNNNNNGG 1 cut(s) 284
AhdI GACNNNNNGTC 1 cut(s) 103
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 118
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 4 cut(s) 7, 22, 164, 269
AluI AGCT 4 cut(s) 7, 22, 164, 269
Alw21I GWGCWC 1 cut(s) 166
AlwI GGATC 1 cut(s) 19
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 3 cut(s) 116, 214, 286
ApeKI GCWGC 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 116, 125
AsuHPI GGTGA 1 cut(s) 235
AsuII TTCGAA 1 cut(s) 264
AvaII GGWCC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 55
BceAI ACGGC 4 cut(s) 52, 115, 229, 273
BciT130I CCWGG 1 cut(s) 120
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 125
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 116, 125
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 2 cut(s) 259, 272
BmuI ACTGGG 2 cut(s) 259, 272
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 64
BsaHI GRCGYC 2 cut(s) 153, 237
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 254, 278
BseBI CCWGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 254, 278
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 3 cut(s) 81, 134, 143
BshFI GGCC 3 cut(s) 118, 216, 288
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 166
BsiWI CGTACG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 284
BsnI GGCC 3 cut(s) 118, 216, 288
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 24, 231
BspACI CCGC 1 cut(s) 143
BspANI GGCC 3 cut(s) 118, 216, 288
BspFNI CGCG 3 cut(s) 81, 134, 143
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 38
BsrI ACTGG 2 cut(s) 254, 278
BssMI GATC 2 cut(s) 24, 231
BssNI GRCGYC 2 cut(s) 153, 237
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 129
BstACI GRCGYC 2 cut(s) 153, 237
BstBAI YACGTR 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 145, 157
BstDEI CTNAG 1 cut(s) 270
BstFNI CGCG 3 cut(s) 81, 134, 143
BstKTI GATC 2 cut(s) 27, 234
BstMBI GATC 2 cut(s) 24, 231
BstMWI GCNNNNNNNGC 2 cut(s) 140, 161
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstUI CGCG 3 cut(s) 81, 134, 143
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 118, 216, 288
BtgZI GCGATG 1 cut(s) 149
BtrI CACGTC 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 68, 198
Cac8I GCNNGC 2 cut(s) 145, 157
CaiI CAGNNNCTG 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 116, 125
CseI GACGC 3 cut(s) 70, 161, 226
Csp6I GTAC 2 cut(s) 130, 274
CviJI RGCY 8 cut(s) 7, 22, 55, 118, 164, 216, 269, 288
CviKI_1 RGCY 8 cut(s) 7, 22, 55, 118, 164, 216, 269, 288
CviQI GTAC 2 cut(s) 130, 274
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 26, 233
DpnII GATC 2 cut(s) 24, 231
DriI GACNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 286
Eam1105I GACNNNNNGTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 166
FaiI YATR 1 cut(s) 61
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 3 cut(s) 118, 216, 288
HgaI GACGC 3 cut(s) 70, 161, 226
Hin1I GRCGYC 2 cut(s) 153, 237
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 300
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 2 cut(s) 63, 90
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 161
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 2 cut(s) 63, 90
Hsp92I GRCGYC 2 cut(s) 153, 237
Kzo9I GATC 2 cut(s) 24, 231
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 105, 132, 152, 169, 235, 291
Lsp1109I GCAGC 1 cut(s) 31
MaeII ACGT 2 cut(s) 63, 90
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 26, 233
MboI GATC 2 cut(s) 24, 231
MboII GAAGA 4 cut(s) 184, 200, 203, 268
MhlI GDGCHC 1 cut(s) 166
MnlI CCTC 5 cut(s) 116, 214, 218, 227, 251
MroXI GAANNNNTTC 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 3 cut(s) 81, 134, 143
MwoI GCNNNNNNNGC 2 cut(s) 140, 161
NdeII GATC 2 cut(s) 24, 231
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 91
NspV TTCGAA 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 260
Pfl23II CGTACG 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 64
Psp124BI GAGCTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspLI CGTACG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 116, 125
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PstNI CAGNNNCTG 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 2 cut(s) 131, 275
RsaNI GTAC 2 cut(s) 130, 274
SacI GAGCTC 1 cut(s) 166
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 24, 231
Sau96I GGNCC 2 cut(s) 116, 125
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 166
SetI ASST 7 cut(s) 9, 24, 66, 79, 93, 166, 271
SfuI TTCGAA 1 cut(s) 264
SinI GGWCC 1 cut(s) 125
SsiI CCGC 1 cut(s) 143
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 2 cut(s) 66, 93
TaqI TCGA 2 cut(s) 210, 264
TscAI CASTG 2 cut(s) 75, 205
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 91
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 2 cut(s) 75, 205
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.