AT2G26900

Sodium pyruvate cotransporter BASS2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
11474752 .. 11478142
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26900.1

Sequence Viewer

Length: 1230 bp
ATGGCTTCCATTTCCAGAATCTTACCAACAGATGGCAGATTAAGTCAATGCAGAATCAACACCTCGTGGGTTCCTTCTACAACCAGAACTCAAACTCACTTAGATTTTCCCAAGTTAGTTTCTGTTAGTAACTCTGGGATAAGTTTGAGGATTCAGAATAGTAAACCTATTAGCCCTGTCTTTGCTCTTGAAGCAACTTCCTCCAGGAGGGTTGTTTGCAAAGCTGCTGCTGGTGTGTCAGGTGACTTACCTGAGAGTACTCCTAAGGAACTTAGTCAGTATGAGAAGATTATTGAGCTTTTGACAACCCTTTTTCCACTTTGGGTTATTTTGGGAACACTTGTTGGCATCTTCAAGCCATCCTTGGTTACATGGTTGGAAACAGATCTCTTTACTCTAGGTCTTGGATTTCTTATGCTTTCCATGGGTTTGACTCTTACGTTTGAAGATTTCAGAAGATGTTTACGTAATCCATGGACGGTGGGTGTTGGTTTTCTTGCTCAATATATGATCAAGCCAATTCTAGGTTTTCTCATTGCAATGACTCTTAAGCTTTCGGCACCTCTTGCGACTGGCCTTATCCTAGTCTCATGCTGCCCTGGAGGACAGGCGTCAAACGTTGCTACTTACATTTCCAAGGGGAATGTAGCGCTCTCTGTACTCATGACAACGTGTTCAACCATTGGGGCTATTATAATGACTCCTCTTCTTACTAAGCTTCTTGCTGGTCAGCTTGTTCCCGTTGACGCTGCTGGACTTGCTCTTAGTACGTTCCAAGTAGTGTTGGTTCCTACCATAATTGGAGTTCTGGCAAATGAGTTCTTTCCTAAATTTACGTCTAAGATCATAACAGTGACGCCTCTAATCGGAGTCATTCTGACTACTCTGCTCTGTGCCAGCCCTATTGGACAAGTTGCAGATGTTTTGAAAACCCAAGGAGCTCAACTTATACTCCCGGTGGCACTCCTTCATGCTGCAGCCTTTGCTATTGGCTATTGGATTTCAAAGTTTTCTTTCGGCGAGTCCACTTCGCGTACCATTTCTATAGAATGTGGAATGCAAAGTTCAGCGCTCGGGTTCTTGCTTGCACAAAAGCATTTCACAAACCCTCTAGTTGCTGTTCCTTCTGCAGTCAGTGTTGTCTGTATGGCGCTTGGCGGGAGCGGCCTGGCCGTGTTCTGGAGAAACCTACCGATTCCGGCAGATGACAAGGATGACTTCAAAGAGTAA

Protein Analysis

409

Amino Acids

43.61

Weight (kDa)

8.95

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF_like PF13593 110 - 373 1.1e-14 SBF-like CPA transporter family (DUF4137)
SBF PF01758 132 - 310 3.5e-56 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26900
fragaria_vesca FvH4_1g04160
malus_domestica MD02G1040100.v1.1
prunus_persica Prupe.7G235600_v2.0.a1 Prupe.7G235600_v2.0.a1 Prupe.7G235600_v2.0.a1
pyrus_communis pycom02g03340
rosa_chinensis RchiOBHm_Chr2g0089661
rosa_laevigata RLG00000016049
rosa_multiflora Rmu_sc0000665.1_g000024
rosa_roxburghii Rroxscaffold_2G00151680
rosa_rugosa Rorug02G0002500 Rorug02G0002500
rosa_samantha Rh2AG047800 Rh2CG048400
rosa_wichuraiana Rw2G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
AccB1I GGYRCC 1 cut(s) 559
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 1164
AccII CGCG 1 cut(s) 1033
AciI CCGC 2 cut(s) 1158, 1164
AclI AACGTT 1 cut(s) 618
AcoI YGGCCR 1 cut(s) 1170
AcsI RAATTY 1 cut(s) 830
AcyI GRCGYC 2 cut(s) 611, 857
AdeI CACNNNGTG 1 cut(s) 66
AfaI GTAC 4 cut(s) 259, 660, 769, 1036
AfeI AGCGCT 2 cut(s) 651, 1071
AfiI CCNNNNNNNGG 5 cut(s) 32, 207, 524, 866, 1179
AflII CTTAAG 1 cut(s) 548
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 7 cut(s) 191, 355, 446, 678, 928, 1005, 1222
AjnI CCWGG 3 cut(s) 203, 598, 1167
AluBI AGCT 6 cut(s) 224, 298, 553, 718, 733, 941
AluI AGCT 6 cut(s) 224, 298, 553, 718, 733, 941
Alw21I GWGCWC 1 cut(s) 943
Alw26I GTCTC 1 cut(s) 592
Ama87I CYCGRG 1 cut(s) 1073
Aor51HI AGCGCT 2 cut(s) 651, 1071
AoxI GGCC 3 cut(s) 574, 1165, 1170
ApeKI GCWGC 6 cut(s) 224, 227, 594, 749, 974, 977
ApoI RAATTY 1 cut(s) 830
AspLEI GCGC 3 cut(s) 652, 1072, 1153
AsuC2I CCSGG 1 cut(s) 956
AsuHPI GGTGA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 1073
AxyI CCTNAGG 1 cut(s) 264
BanI GGYRCC 1 cut(s) 559
BanII GRGCYC 1 cut(s) 943
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 943
BbvI GCAGC 6 cut(s) 211, 214, 581, 736, 961, 989
BccI CCATC 2 cut(s) 26, 367
BceAI ACGGC 1 cut(s) 1157
BciT130I CCWGG 3 cut(s) 205, 600, 1169
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 1 cut(s) 956
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 4 cut(s) 398, 524, 584, 1112
BfmI CTRYAG 3 cut(s) 975, 1044, 1128
BfoI RGCGCY 3 cut(s) 653, 1073, 1154
BfrI CTTAAG 1 cut(s) 548
BglII AGATCT 1 cut(s) 385
BisI GCNGC 7 cut(s) 225, 228, 595, 750, 975, 978, 1165
BlsI GCNGC 7 cut(s) 226, 229, 596, 751, 976, 979, 1166
BmcAI AGTACT 1 cut(s) 259
Bme1390I CCNGG 4 cut(s) 205, 600, 956, 1169
BmeT110I CYCGRG 1 cut(s) 1073
BmiI GGNNCC 3 cut(s) 72, 561, 789
BmrFI CCNGG 4 cut(s) 205, 600, 956, 1169
BmsI GCATC 1 cut(s) 357
BoxI GACNNNNGTC 1 cut(s) 610
BpmI CTGGAG 3 cut(s) 187, 621, 1201
BpuMI CCSGG 1 cut(s) 956
BsaAI YACGTR 1 cut(s) 467
BsaHI GRCGYC 2 cut(s) 611, 857
BsaJI CCNNGG 6 cut(s) 363, 423, 473, 598, 636, 934
BsaXI ACNNNNNCTCC 2 cut(s) 936, 966
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 207, 524, 866, 1179
Bse1I ACTGG 1 cut(s) 577
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 2 cut(s) 534, 546
BseBI CCWGG 3 cut(s) 205, 600, 1169
BseDI CCNNGG 6 cut(s) 363, 423, 473, 598, 636, 934
BseGI GGATG 2 cut(s) 359, 1219
BseLI CCNNNNNNNGG 5 cut(s) 32, 207, 524, 866, 1179
BseMI GCAATG 2 cut(s) 534, 546
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 1 cut(s) 693
BseXI GCAGC 6 cut(s) 211, 214, 581, 736, 961, 989
Bsh1236I CGCG 1 cut(s) 1033
BshFI GGCC 3 cut(s) 576, 1167, 1172
BshNI GGYRCC 1 cut(s) 559
BsiHKAI GWGCWC 1 cut(s) 943
BsiHKCI CYCGRG 1 cut(s) 1073
BsiSI CCGG 2 cut(s) 956, 1199
BslI CCNNNNNNNGG 5 cut(s) 32, 207, 524, 866, 1179
BsmAI GTCTC 1 cut(s) 592
BsmI GAATGC 1 cut(s) 1062
BsnI GGCC 3 cut(s) 576, 1167, 1172
BsoBI CYCGRG 1 cut(s) 1073
Bsp1286I GDGCHC 1 cut(s) 943
Bsp143I GATC 3 cut(s) 385, 510, 843
Bsp19I CCATGG 2 cut(s) 423, 473
BspACI CCGC 2 cut(s) 1158, 1164
BspANI GGCC 3 cut(s) 576, 1167, 1172
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 1033
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 3 cut(s) 72, 561, 789
BspMAI CTGCAG 2 cut(s) 979, 1132
BspT107I GGYRCC 1 cut(s) 559
BspTI CTTAAG 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 1164
BsrDI GCAATG 2 cut(s) 534, 546
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 6 cut(s) 363, 423, 473, 598, 636, 934
BssMI GATC 3 cut(s) 385, 510, 843
BssNI GRCGYC 2 cut(s) 611, 857
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 5 cut(s) 363, 423, 473, 636, 934
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 3 cut(s) 205, 600, 1169
Bst4CI ACNGT 2 cut(s) 481, 853
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 2 cut(s) 611, 857
BstAFI CTTAAG 1 cut(s) 548
BstAPI GCANNNNNTGC 2 cut(s) 566, 983
BstBAI YACGTR 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 898, 1086
BstDEI CTNAG 7 cut(s) 100, 252, 264, 272, 714, 764, 840
BstDSI CCRYGG 2 cut(s) 423, 473
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 359, 1219
BstFNI CGCG 1 cut(s) 1033
BstH2I RGCGCY 3 cut(s) 653, 1073, 1154
BstHHI GCGC 3 cut(s) 652, 1072, 1153
BstKTI GATC 3 cut(s) 388, 513, 846
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 3 cut(s) 385, 510, 843
BstMWI GCNNNNNNNGC 5 cut(s) 191, 566, 758, 983, 1164
BstNI CCWGG 3 cut(s) 205, 600, 1169
BstPAI GACNNNNGTC 1 cut(s) 610
BstSCI CCNGG 4 cut(s) 203, 598, 954, 1167
BstSFI CTRYAG 3 cut(s) 975, 1044, 1128
BstSNI TACGTA 1 cut(s) 467
BstUI CGCG 1 cut(s) 1033
BstV1I GCAGC 6 cut(s) 211, 214, 581, 736, 961, 989
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 3 cut(s) 576, 1167, 1172
BtgI CCRYGG 2 cut(s) 423, 473
BtsCI GGATG 2 cut(s) 359, 1219
BtsIMutI CAGTG 2 cut(s) 858, 1141
Cac8I GCNNGC 2 cut(s) 898, 1086
CciI TCATGA 1 cut(s) 663
CfoI GCGC 3 cut(s) 652, 1072, 1153
CseI GACGC 3 cut(s) 600, 755, 865
Csp6I GTAC 4 cut(s) 258, 659, 768, 1035
CviAII CATG 6 cut(s) 372, 424, 474, 591, 664, 971
CviQI GTAC 4 cut(s) 258, 659, 768, 1035
DdeI CTNAG 7 cut(s) 100, 252, 264, 272, 714, 764, 840
DpnI GATC 3 cut(s) 387, 512, 845
DpnII GATC 3 cut(s) 385, 510, 843
DraIII CACNNNGTG 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 1170
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 941
Eco105I TACGTA 1 cut(s) 467
Eco130I CCWWGG 5 cut(s) 363, 423, 473, 636, 934
Eco24I GRGCYC 1 cut(s) 943
Eco47III AGCGCT 2 cut(s) 651, 1071
Eco53kI GAGCTC 1 cut(s) 941
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 1073
EcoICRI GAGCTC 1 cut(s) 941
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoRII CCWGG 3 cut(s) 203, 598, 1167
EcoT14I CCWWGG 5 cut(s) 363, 423, 473, 636, 934
EcoT38I GRGCYC 1 cut(s) 943
ErhI CCWWGG 5 cut(s) 363, 423, 473, 636, 934
FaeI CATG 6 cut(s) 375, 427, 477, 594, 667, 974
FalI AAGNNNNNCTT 3 cut(s) 347, 379, 1202
FatI CATG 6 cut(s) 371, 423, 473, 590, 663, 970
FauI CCCGC 1 cut(s) 1151
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 7 cut(s) 225, 228, 595, 750, 975, 978, 1165
FokI GGATG 2 cut(s) 346, 1226
FriOI GRGCYC 1 cut(s) 943
Fsp4HI GCNGC 7 cut(s) 225, 228, 595, 750, 975, 978, 1165
FspBI CTAG 4 cut(s) 398, 524, 584, 1112
GlaI GCGC 3 cut(s) 651, 1071, 1152
GluI GCNGC 7 cut(s) 225, 228, 595, 750, 975, 978, 1165
GsuI CTGGAG 3 cut(s) 187, 621, 1201
HaeII RGCGCY 3 cut(s) 653, 1073, 1154
HaeIII GGCC 3 cut(s) 576, 1167, 1172
HapII CCGG 2 cut(s) 956, 1199
HgaI GACGC 3 cut(s) 600, 755, 865
HhaI GCGC 3 cut(s) 652, 1072, 1153
Hin1I GRCGYC 2 cut(s) 611, 857
Hin1II CATG 6 cut(s) 375, 427, 477, 594, 667, 974
Hin6I GCGC 3 cut(s) 650, 1070, 1151
HinP1I GCGC 3 cut(s) 650, 1070, 1151
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 2 cut(s) 551, 716
HinfI GANTC 9 cut(s) 18, 54, 151, 433, 544, 700, 870, 1022, 1195
HpaII CCGG 2 cut(s) 956, 1199
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 4 cut(s) 164, 464, 745, 1026
Hpy188I TCNGA 4 cut(s) 156, 455, 869, 879
Hpy188III TCNNGA 4 cut(s) 15, 188, 664, 1180
Hpy8I GTNNAC 4 cut(s) 164, 464, 745, 1026
HpyAV CCTTC 3 cut(s) 84, 977, 1134
HpyCH4III ACNGT 2 cut(s) 481, 853
HpyCH4IV ACGT 6 cut(s) 440, 466, 618, 671, 770, 836
HpyCH4V TGCA 8 cut(s) 51, 219, 539, 917, 977, 1060, 1088, 1130
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 566, 758, 983, 1164
HpyF3I CTNAG 7 cut(s) 100, 252, 264, 272, 714, 764, 840
HpySE526I ACGT 6 cut(s) 440, 466, 618, 671, 770, 836
Hsp92I GRCGYC 2 cut(s) 611, 857
Hsp92II CATG 6 cut(s) 375, 427, 477, 594, 667, 974
HspAI GCGC 3 cut(s) 650, 1070, 1151
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 3 cut(s) 385, 510, 843
LmnI GCTCC 2 cut(s) 938, 1161
Lsp1109I GCAGC 6 cut(s) 211, 214, 581, 736, 961, 989
LweI GCATC 1 cut(s) 357
MaeI CTAG 4 cut(s) 398, 524, 584, 1112
MaeII ACGT 6 cut(s) 440, 466, 618, 671, 770, 836
MaeIII GTNAC 4 cut(s) 128, 242, 367, 853
MalI GATC 3 cut(s) 387, 512, 845
MbiI CCGCTC 1 cut(s) 1164
MboI GATC 3 cut(s) 385, 510, 843
MboII GAAGA 5 cut(s) 298, 343, 458, 468, 698
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 943
MluCI AATT 3 cut(s) 519, 798, 830
MlyI GAGTC 5 cut(s) 427, 538, 694, 879, 1031
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 9 cut(s) 73, 141, 201, 211, 573, 596, 714, 870, 1119
MseI TTAA 2 cut(s) 41, 549
MslI CAYNNNNRTG 2 cut(s) 539, 851
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 2 cut(s) 956, 1199
MspR9I CCNGG 4 cut(s) 205, 600, 956, 1169
Mva1269I GAATGC 1 cut(s) 1062
MvaI CCWGG 3 cut(s) 205, 600, 1169
MvnI CGCG 1 cut(s) 1033
MwoI GCNNNNNNNGC 5 cut(s) 191, 566, 758, 983, 1164
NciI CCSGG 1 cut(s) 956
NcoI CCATGG 2 cut(s) 423, 473
NdeII GATC 3 cut(s) 385, 510, 843
NlaIII CATG 6 cut(s) 375, 427, 477, 594, 667, 974
NlaIV GGNNCC 3 cut(s) 72, 561, 789
NmuCI GTSAC 2 cut(s) 242, 853
PagI TCATGA 1 cut(s) 663
PctI GAATGC 1 cut(s) 1062
PfeI GAWTC 4 cut(s) 18, 54, 151, 1195
PflMI CCANNNNNTGG 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 7 cut(s) 226, 229, 596, 751, 976, 979, 1166
PleI GAGTC 5 cut(s) 427, 538, 694, 878, 1030
PpsI GAGTC 5 cut(s) 427, 538, 694, 878, 1030
Ppu21I YACGTR 1 cut(s) 467
PshAI GACNNNNGTC 1 cut(s) 610
PsiI TTATAA 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 943
Psp1406I AACGTT 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 203, 598, 1167
PspGI CCWGG 3 cut(s) 203, 598, 1167
PspN4I GGNNCC 3 cut(s) 72, 561, 789
PsrI GAACNNNNNNTAC 2 cut(s) 771, 803
PstI CTGCAG 2 cut(s) 979, 1132
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 4 cut(s) 259, 660, 769, 1036
RsaNI GTAC 4 cut(s) 258, 659, 768, 1035
RseI CAYNNNNRTG 2 cut(s) 539, 851
SacI GAGCTC 1 cut(s) 943
SaqAI TTAA 2 cut(s) 41, 549
SatI GCNGC 7 cut(s) 225, 228, 595, 750, 975, 978, 1165
Sau3AI GATC 3 cut(s) 385, 510, 843
ScaI AGTACT 1 cut(s) 259
SchI GAGTC 5 cut(s) 427, 538, 694, 879, 1031
ScrFI CCNGG 4 cut(s) 205, 600, 956, 1169
SduI GDGCHC 1 cut(s) 943
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 3 cut(s) 975, 1044, 1128
SmiMI CAYNNNNRTG 2 cut(s) 539, 851
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SnaBI TACGTA 1 cut(s) 467
Sse9I AATT 3 cut(s) 519, 798, 830
SsiI CCGC 2 cut(s) 1158, 1164
SspMI CTAG 4 cut(s) 398, 524, 584, 1112
SstI GAGCTC 1 cut(s) 943
StyD4I CCNGG 4 cut(s) 203, 598, 954, 1167
StyI CCWWGG 5 cut(s) 363, 423, 473, 636, 934
TaaI ACNGT 2 cut(s) 481, 853
TaiI ACGT 6 cut(s) 443, 469, 621, 674, 773, 839
TasI AATT 3 cut(s) 519, 798, 830
TatI WGTACW 2 cut(s) 257, 658
TauI GCSGC 1 cut(s) 1167
TfiI GAWTC 4 cut(s) 18, 54, 151, 1195
Tru1I TTAA 2 cut(s) 41, 549
Tru9I TTAA 2 cut(s) 41, 549
TscAI CASTG 2 cut(s) 858, 1141
TseFI GTSAC 2 cut(s) 242, 853
TseI GCWGC 6 cut(s) 224, 227, 594, 749, 974, 977
Tsp45I GTSAC 2 cut(s) 242, 853
TspDTI ATGAA 1 cut(s) 959
TspRI CASTG 2 cut(s) 858, 1141
Van91I CCANNNNNTGG 1 cut(s) 32
Vha464I CTTAAG 1 cut(s) 548
XagI CCTNNNNNAGG 1 cut(s) 205
XapI RAATTY 1 cut(s) 830
XspI CTAG 4 cut(s) 398, 524, 584, 1112
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.