Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015041

Physical Location & Seq

Genomic Coordinates Reverse (-)

20475690 .. 20480129

Gene Structure 4440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G235600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCGTCCATGTCTAGATTTTCTGTAAAGGATTTCAAGTTAAGAACATGTGACGCTTTCTGCAGGCCAAGCTCTTCTCTATCTGCAAGGAGGCTGCAAACTCATCTGGGTACGTATCTTTCTGTGCCTGAGAATGGAAGAAGTTGTGCAATCCAAAGCAAGCCATGGAGTCCCATCGTTTTGCAATCCAAATCAAGGAACTCTGAAGTTTTGTGCAAGGCTGCAAGAAATTTATCTGGAGATCTTCCCGGTAGCACTTCTAGTGGGATGAGCCAGTACGAGAGAATAATTGAAACTTTGACAACTCTATTTCCTGTGTGGGTCATATTGGGCACCATCCTGGGGATCTACAAGCCATCTGCTGTAACTTGGTTGGAGACAGACCTTTTCACACTTGGACTGGGTTTCCTCATGCTTTCTATGGGTTTGACATTGACCTTCGAGGATTTTAGACGATGTTTACGTAATCCTTGGACTGTGGGTGTAGGATTTCTTGCACAGTACATGATAAAACCTCTGCTAGGCTTTGTCATTGCCCTGACGCTAAAACTTTCTGCACCTATTGCGACTGGTCTTATCTTGGTCTCATGCTGTCCTGGTGGTCAGGCGTCAAATGTTGCAACTTATATATCTAAAGGAAATGTTGCACTTTCTGTTCTCATGACAACGTGTTCAACAATAGGAGCTATTATTATGACACCGCTTCTTACCAAGCTTCTTGCTGGCCAGCTTGTTCCAGTTGATGCTGCGGGCCTAGCAATCAGCACTTTCCAGGTTGTTTTAATGCCAACAATTGTTGGAGTGCTGGCAAATGAGTTCTTCCCCAAAGTCACTTCAAAAATAGCCTCAGTGACTCCTTTAATTGGAGTAATTCTCACCACTCTACTCTGTGCAAGCCCGATCGGGCAAGTTTCTGAAGTCTTGAAAACACAAGGAGCACAACTAATACTCCCGGTGGCTGTTCTACATGGTGCTGCATTTGCTATTGGTTATTTTGTTTCAAAAATATCATTTGGTGAATCTACTTCTCGTACCATATCCATAGAGTGTGGGATGCAGAGCTCAGCACTTGGGTTTTTACTTGCTCAAAAGCATTTTACAAACCCTCTTGTAGCTGTCCCTTCTGCTGTTAGTGTTGTTTGCATGGCGCTCGGTGGGAGTGCTCTTGCTGTGTTTTGGAGAAACACACCAATTCCTGTTGATGACAAGGATGATTTCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0006849 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

409

Amino Acids

43.46

Weight (kDa)

9.12

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26900
fragaria_vesca	FvH4_1g04160
malus_domestica	MD02G1040100.v1.1
prunus_persica	Prupe.7G235600_v2.0.a1 Prupe.7G235600_v2.0.a1 Prupe.7G235600_v2.0.a1
pyrus_communis	pycom02g03340
rosa_chinensis	RchiOBHm_Chr2g0089661
rosa_laevigata	RLG00000016049
rosa_multiflora	Rmu_sc0000665.1_g000024
rosa_roxburghii	Rroxscaffold_2G00151680
rosa_rugosa	Rorug02G0002500 Rorug02G0002500
rosa_samantha	Rh2AG047800 Rh2CG048400
rosa_wichuraiana	Rw2G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AciI	CCGC	2 cut(s)	701, 749
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	724
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	2 cut(s)	225, 936
AcyI	GRCGYC	1 cut(s)	608
AfaI	GTAC	4 cut(s)	112, 278, 503, 1033
AfiI	CCNNNNNNNGG	5 cut(s)	134, 195, 342, 521, 863
AflIII	ACRYGT	2 cut(s)	47, 668
AgsI	TTSAA	7 cut(s)	37, 293, 675, 837, 925, 1002, 1219
AjnI	CCWGG	3 cut(s)	339, 595, 771
AluBI	AGCT	6 cut(s)	72, 686, 715, 730, 1062, 1115
AluI	AGCT	6 cut(s)	72, 686, 715, 730, 1062, 1115
Alw21I	GWGCWC	3 cut(s)	940, 1064, 1165
Alw26I	GTCTC	2 cut(s)	371, 589
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	65, 724, 751
ApeKI	GCWGC	4 cut(s)	94, 221, 746, 974
ApoI	RAATTY	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	1150
AspS9I	GGNCC	1 cut(s)	751
AsuC2I	CCSGG	2 cut(s)	249, 953
AsuHPI	GGTGA	2 cut(s)	868, 1028
BaeGI	GKGCMC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	1064
Bbv12I	GWGCWC	3 cut(s)	940, 1064, 1165
BbvI	GCAGC	4 cut(s)	81, 208, 733, 961
BccI	CCATC	3 cut(s)	182, 344, 364
BcgI	CGANNNNNNTGC	2 cut(s)	1132, 1166
BciT130I	CCWGG	3 cut(s)	341, 597, 773
BcnI	CCSGG	2 cut(s)	249, 953
BcoDI	GTCTC	2 cut(s)	371, 589
BfaI	CTAG	4 cut(s)	15, 261, 521, 755
BfmI	CTRYAG	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	1151
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	4 cut(s)	95, 222, 747, 975
BlpI	GCTNAGC	1 cut(s)	1063
BlsI	GCNGC	4 cut(s)	96, 223, 748, 976
Bme1390I	CCNGG	5 cut(s)	249, 341, 597, 773, 953
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	5 cut(s)	249, 341, 597, 773, 953
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	733, 1044
BmuI	ACTGGG	1 cut(s)	410
BplI	GAGNNNNNCTC	2 cut(s)	858, 890
BpmI	CTGGAG	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	1063
BpuMI	CCSGG	2 cut(s)	249, 953
BsaAI	YACGTR	2 cut(s)	114, 464
BsaHI	GRCGYC	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	3 cut(s)	164, 340, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 195, 342, 521, 863
Bse1I	ACTGG	4 cut(s)	274, 405, 574, 737
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	3 cut(s)	341, 597, 773
BseDI	CCNNGG	3 cut(s)	164, 340, 470
BseGI	GGATG	4 cut(s)	273, 336, 1059, 1216
BseLI	CCNNNNNNNGG	5 cut(s)	134, 195, 342, 521, 863
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	120, 861, 1077
BseNI	ACTGG	4 cut(s)	274, 405, 574, 737
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	4 cut(s)	81, 208, 733, 961
BsgI	GTGCAG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	903
BshFI	GGCC	3 cut(s)	67, 726, 753
BshNI	GGYRCC	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	903
BsiHKAI	GWGCWC	3 cut(s)	940, 1064, 1165
BsiSI	CCGG	2 cut(s)	249, 953
BslFI	GGGAC	2 cut(s)	156, 1103
BslI	CCNNNNNNNGG	5 cut(s)	134, 195, 342, 521, 863
BsmAI	GTCTC	2 cut(s)	371, 589
BsmFI	GGGAC	2 cut(s)	156, 1103
BsnI	GGCC	3 cut(s)	67, 726, 753
Bso31I	GGTCTC	1 cut(s)	589
Bsp1286I	GDGCHC	4 cut(s)	335, 940, 1064, 1165
Bsp143I	GATC	3 cut(s)	241, 345, 900
Bsp1720I	GCTNAGC	1 cut(s)	1063
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	2 cut(s)	701, 749
BspANI	GGCC	3 cut(s)	67, 726, 753
BspCNI	CTCAG	3 cut(s)	121, 860, 1076
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	65
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	4 cut(s)	274, 405, 574, 737
BssECI	CCNNGG	3 cut(s)	164, 340, 470
BssMI	GATC	3 cut(s)	241, 345, 900
BssNI	GRCGYC	1 cut(s)	608
BssT1I	CCWWGG	2 cut(s)	164, 470
Bst2UI	CCWGG	3 cut(s)	341, 597, 773
Bst4CI	ACNGT	2 cut(s)	478, 501
Bst6I	CTCTTC	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstBAI	YACGTR	2 cut(s)	114, 464
BstC8I	GCNNGC	7 cut(s)	65, 161, 724, 728, 751, 807, 895
BstDEI	CTNAG	3 cut(s)	129, 847, 1063
BstDSI	CCRYGG	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	4 cut(s)	273, 336, 1059, 1216
BstH2I	RGCGCY	1 cut(s)	1151
BstHHI	GCGC	1 cut(s)	1150
BstKTI	GATC	3 cut(s)	244, 348, 903
BstMAI	GTCTC	2 cut(s)	371, 589
BstMBI	GATC	3 cut(s)	241, 345, 900
BstMCI	CGRYCG	1 cut(s)	903
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 563, 755, 980
BstNI	CCWGG	3 cut(s)	341, 597, 773
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	5 cut(s)	247, 339, 595, 771, 951
BstSFI	CTRYAG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	335
BstSNI	TACGTA	2 cut(s)	114, 464
BstV1I	GCAGC	4 cut(s)	81, 208, 733, 961
BstX2I	RGATCY	2 cut(s)	241, 345
BstYI	RGATCY	2 cut(s)	241, 345
BsuRI	GGCC	3 cut(s)	67, 726, 753
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	4 cut(s)	273, 336, 1059, 1216
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	7 cut(s)	65, 161, 724, 728, 751, 807, 895
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	1150
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	3 cut(s)	62, 550, 597
Csp6I	GTAC	4 cut(s)	111, 277, 502, 1032
CviAII	CATG	9 cut(s)	10, 48, 165, 412, 505, 588, 661, 968, 1144
CviQI	GTAC	4 cut(s)	111, 277, 502, 1032
DdeI	CTNAG	3 cut(s)	129, 847, 1063
DpnI	GATC	3 cut(s)	243, 347, 902
DpnII	GATC	3 cut(s)	241, 345, 900
EaeI	YGGCCR	1 cut(s)	724
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	1062
Eco105I	TACGTA	2 cut(s)	114, 464
Eco130I	CCWWGG	2 cut(s)	164, 470
Eco24I	GRGCYC	1 cut(s)	1064
Eco31I	GGTCTC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	1062
Eco57I	CTGAAG	2 cut(s)	225, 936
EcoICRI	GAGCTC	1 cut(s)	1062
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoRII	CCWGG	3 cut(s)	339, 595, 771
EcoT14I	CCWWGG	2 cut(s)	164, 470
EcoT38I	GRGCYC	1 cut(s)	1064
ErhI	CCWWGG	2 cut(s)	164, 470
FaeI	CATG	9 cut(s)	13, 51, 168, 415, 508, 591, 664, 971, 1147
FaqI	GGGAC	2 cut(s)	156, 1103
FatI	CATG	9 cut(s)	9, 47, 164, 411, 504, 587, 660, 967, 1143
FauI	CCCGC	1 cut(s)	742
Fnu4HI	GCNGC	4 cut(s)	95, 222, 747, 975
FokI	GGATG	4 cut(s)	280, 323, 1066, 1223
FriOI	GRGCYC	1 cut(s)	1064
Fsp4HI	GCNGC	4 cut(s)	95, 222, 747, 975
FspBI	CTAG	4 cut(s)	15, 261, 521, 755
GlaI	GCGC	1 cut(s)	1149
GluI	GCNGC	4 cut(s)	95, 222, 747, 975
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	1151
HaeIII	GGCC	3 cut(s)	67, 726, 753
HapII	CCGG	2 cut(s)	249, 953
HgaI	GACGC	3 cut(s)	62, 550, 597
HhaI	GCGC	1 cut(s)	1150
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	9 cut(s)	13, 51, 168, 415, 508, 591, 664, 971, 1147
Hin6I	GCGC	1 cut(s)	1148
HinP1I	GCGC	1 cut(s)	1148
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	3 cut(s)	169, 853, 1019
HpaII	CCGG	2 cut(s)	249, 953
HphI	GGTGA	2 cut(s)	868, 1028
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	205, 916
Hpy188III	TCNNGA	4 cut(s)	15, 237, 661, 922
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	448, 1131
HpyCH4III	ACNGT	2 cut(s)	478, 501
HpyCH4IV	ACGT	3 cut(s)	113, 463, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 563, 755, 980
HpyF3I	CTNAG	3 cut(s)	129, 847, 1063
HpySE526I	ACGT	3 cut(s)	113, 463, 668
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	9 cut(s)	13, 51, 168, 415, 508, 591, 664, 971, 1147
HspAI	GCGC	1 cut(s)	1148
Kzo9I	GATC	3 cut(s)	241, 345, 900
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	683, 935
Lsp1109I	GCAGC	4 cut(s)	81, 208, 733, 961
LweI	GCATC	2 cut(s)	733, 1044
MaeI	CTAG	4 cut(s)	15, 261, 521, 755
MaeII	ACGT	3 cut(s)	113, 463, 668
MaeIII	GTNAC	4 cut(s)	50, 364, 829, 850
MalI	GATC	3 cut(s)	243, 347, 902
MboI	GATC	3 cut(s)	241, 345, 900
MboII	GAAGA	4 cut(s)	66, 150, 236, 811
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	2 cut(s)	241, 345
MhlI	GDGCHC	4 cut(s)	335, 940, 1064, 1165
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	6 cut(s)	229, 288, 792, 861, 870, 1191
MluNI	TGGCCA	1 cut(s)	726
MlyI	GAGTC	2 cut(s)	178, 847
MmeI	TCCRAC	2 cut(s)	354, 778
MnlI	CCTC	6 cut(s)	84, 419, 436, 525, 856, 1116
Mox20I	TGGCCA	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	726
MseI	TTAA	3 cut(s)	41, 782, 860
Msp20I	TGGCCA	1 cut(s)	726
MspI	CCGG	2 cut(s)	249, 953
MspR9I	CCNGG	5 cut(s)	249, 341, 597, 773, 953
MunI	CAATTG	1 cut(s)	792
MvaI	CCWGG	3 cut(s)	341, 597, 773
MwoI	GCNNNNNNNGC	4 cut(s)	69, 563, 755, 980
NciI	CCSGG	2 cut(s)	249, 953
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	241, 345, 900
NlaIII	CATG	9 cut(s)	13, 51, 168, 415, 508, 591, 664, 971, 1147
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	3 cut(s)	50, 829, 850
NspI	RCATGY	1 cut(s)	51
PagI	TCATGA	1 cut(s)	660
PciI	ACATGT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	1019
PkrI	GCNGC	4 cut(s)	96, 223, 748, 976
Ple19I	CGATCG	1 cut(s)	903
PleI	GAGTC	2 cut(s)	177, 847
PpsI	GAGTC	2 cut(s)	177, 847
Ppu21I	YACGTR	2 cut(s)	114, 464
PscI	ACATGT	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	1064
Psp6I	CCWGG	3 cut(s)	339, 595, 771
PspGI	CCWGG	3 cut(s)	339, 595, 771
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	751
PstI	CTGCAG	1 cut(s)	65
PsuI	RGATCY	2 cut(s)	241, 345
PvuI	CGATCG	1 cut(s)	903
RsaI	GTAC	4 cut(s)	112, 278, 503, 1033
RsaNI	GTAC	4 cut(s)	111, 277, 502, 1032
SacI	GAGCTC	1 cut(s)	1064
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	41, 782, 860
SatI	GCNGC	4 cut(s)	95, 222, 747, 975
Sau3AI	GATC	3 cut(s)	241, 345, 900
Sau96I	GGNCC	1 cut(s)	751
SchI	GAGTC	2 cut(s)	178, 847
ScrFI	CCNGG	5 cut(s)	249, 341, 597, 773, 953
SduI	GDGCHC	4 cut(s)	335, 940, 1064, 1165
SfaNI	GCATC	2 cut(s)	733, 1044
SfcI	CTRYAG	1 cut(s)	61
SnaBI	TACGTA	2 cut(s)	114, 464
Sse9I	AATT	6 cut(s)	229, 288, 792, 861, 870, 1191
SsiI	CCGC	2 cut(s)	701, 749
SspMI	CTAG	4 cut(s)	15, 261, 521, 755
SstI	GAGCTC	1 cut(s)	1064
StyD4I	CCNGG	5 cut(s)	247, 339, 595, 771, 951
StyI	CCWWGG	2 cut(s)	164, 470
TaaI	ACNGT	2 cut(s)	478, 501
TaiI	ACGT	3 cut(s)	116, 466, 671
TaqI	TCGA	1 cut(s)	441
TasI	AATT	6 cut(s)	229, 288, 792, 861, 870, 1191
TatI	WGTACW	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	1019
Tru1I	TTAA	3 cut(s)	41, 782, 860
Tru9I	TTAA	3 cut(s)	41, 782, 860
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	3 cut(s)	50, 829, 850
TseI	GCWGC	4 cut(s)	94, 221, 746, 974
Tsp45I	GTSAC	3 cut(s)	50, 829, 850
TspRI	CASTG	1 cut(s)	855
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	1 cut(s)	229
XbaI	TCTAGA	1 cut(s)	14
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	4 cut(s)	15, 261, 521, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.