Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015041

Physical Location & Seq

Genomic Coordinates Forward (+)

2200196 .. 2204773

Gene Structure 4578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCTTCCTTGTCTAGATTTGCTCTCAAAGATTTCAAGTTAAATACTTGTGAAGCTTATTGTAGGCAGAGTCCTTGTTTATCTTCAAGGAGGCTCCCAACCCATCTTGACGTAAGAGGTGAAATTTCTGTGCCGGAGAAGGGAAGAAGTTGTGCAATTCAAAGCAAGACATGGGGTCCGATTGCTGCCGGTTCTTCTATAGTTCAAACTTCAAGGAACTCCAAAGTTCTGTGCAAGGCTGCGACAAATGCATCTGGAGATCTTCCCACTCCTAGTGGCATGAGCCAGTATGAGAGAATAATTGAAACTCTGACAACTCTATTTCCTCTATGGGTCATAATTGGCACCATAGTTGGGATCTACAAACCATCTGCTGTAACTTGGTTGGAGACAGATCTTTTCACCCTTGGCCTTGGTTTCCTCATGCTTTCTATGGGTTTGACGTTAACCTTTGAAGATTTTAGACGATGCTTGCGTAATCCTTGGACTGTTGGTGTAGGATTTCTCGCTCAGTACATAATCAAACCCTTACTAGGATTTTCCATTGCCCTGATGCTAAAGCTTTCTGCACCTATTGCTACTGGTCTTATTCTGGTTTCCTGCTGTCCTGGGGGTCAGGCATCAAATGTTGCAACATATATCTCAAAGGGAAATGTTGCACTATCTGTTCTCATGACAACGTGTTCAACAATAGGAGCTATTATTATGACACCGCTTCTTACCAAGCTGCTTGCTGGCCAGCTTGTTCCAGTTGATGCTGCGGGCTTAGCACTCAGCACTTTCCAGGTTGTTTTAGTGCCAACAATTATTGGAGTACTGGCTAATGAGTTCTTCCCAAAGTTCACTTCAAAAATAAGCTCAGTGACACCTTTGATTGGAGTAATTCTCACCACTCTTCTCTGTGCAAGCCCGATTGGACAAGTTTCTGAAGTATTGAAATCACAAGGACCACAATTAATACTCCCGGTGGCTGCTCTACATGCTGCTGCATTTGCCATTGGCTATTGGGTTTCAAGGATATCTTTCGGTGAATCCACTTCTCGTACCATATCCATAGAGTGTGGGATGCAGAGCTCGGCACTTGGGTTTTTACTAGCTCAAAAGCATTTCACAAACCCCTTAGTTGCGGTCCCTTCTGCTGTTAGCGTTGTTTGCATGGCGCTTGGCGGCAGTGGTCTCGCCGTGTTCTGGAGAAACAAAGGCCTTCCGGTTGATGACAAAGATGATTTCAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0006849 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

413

Amino Acids

43.8

Weight (kDa)

9.07

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	128 - 376	1.7e-15	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	135 - 314	2.5e-55	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26900
fragaria_vesca	FvH4_1g04160
malus_domestica	MD02G1040100.v1.1
prunus_persica	Prupe.7G235600_v2.0.a1 Prupe.7G235600_v2.0.a1 Prupe.7G235600_v2.0.a1
pyrus_communis	pycom02g03340
rosa_chinensis	RchiOBHm_Chr2g0089661
rosa_laevigata	RLG00000016049
rosa_multiflora	Rmu_sc0000665.1_g000024
rosa_roxburghii	Rroxscaffold_2G00151680
rosa_rugosa	Rorug02G0002500 Rorug02G0002500
rosa_samantha	Rh2AG047800 Rh2CG048400
rosa_wichuraiana	Rw2G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AciI	CCGC	4 cut(s)	713, 761, 1127, 1167
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	948
AfaI	GTAC	3 cut(s)	515, 816, 1045
AfiI	CCNNNNNNNGG	5 cut(s)	140, 354, 533, 875, 1188
AflIII	ACRYGT	1 cut(s)	680
AhdI	GACNNNNNGTC	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	607, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	829, 861
AluBI	AGCT	8 cut(s)	56, 562, 698, 727, 742, 858, 1074, 1097
AluI	AGCT	8 cut(s)	56, 562, 698, 727, 742, 858, 1074, 1097
Alw21I	GWGCWC	1 cut(s)	1076
Alw26I	GTCTC	2 cut(s)	383, 1181
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	3 cut(s)	409, 736, 1201
ApeKI	GCWGC	7 cut(s)	185, 239, 727, 758, 971, 983, 986
ApoI	RAATTY	1 cut(s)	123
AseI	ATTAAT	1 cut(s)	956
AspLEI	GCGC	1 cut(s)	1162
AspS9I	GGNCC	3 cut(s)	176, 947, 1129
AsuC2I	CCSGG	1 cut(s)	965
AsuHPI	GGTGA	4 cut(s)	131, 394, 880, 1040
AvaII	GGWCC	3 cut(s)	176, 947, 1129
BalI	TGGCCA	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	1076
Bbv12I	GWGCWC	1 cut(s)	1076
BbvI	GCAGC	7 cut(s)	172, 226, 714, 745, 958, 970, 973
BccI	CCATC	2 cut(s)	111, 376
BceAI	ACGGC	1 cut(s)	1166
BcgI	CGANNNNNNTGC	2 cut(s)	1159, 1193
BciT130I	CCWGG	2 cut(s)	609, 785
BcnI	CCSGG	1 cut(s)	965
BcoDI	GTCTC	2 cut(s)	383, 1181
BfaI	CTAG	4 cut(s)	15, 273, 533, 1094
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	1163
BglII	AGATCT	2 cut(s)	259, 394
BisI	GCNGC	8 cut(s)	186, 240, 728, 759, 972, 984, 987, 1168
BlpI	GCTNAGC	1 cut(s)	766
BlsI	GCNGC	8 cut(s)	187, 241, 729, 760, 973, 985, 988, 1169
BmcAI	AGTACT	1 cut(s)	816
Bme1390I	CCNGG	3 cut(s)	609, 785, 965
Bme18I	GGWCC	3 cut(s)	176, 947, 1129
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	176, 947, 1129
BmiI	GGNNCC	4 cut(s)	95, 177, 346, 1131
BmrFI	CCNGG	3 cut(s)	609, 785, 965
BmsI	GCATC	6 cut(s)	260, 458, 543, 629, 745, 1056
BplI	GAGNNNNNCTC	2 cut(s)	870, 902
BpmI	CTGGAG	2 cut(s)	276, 1210
Bpu1102I	GCTNAGC	1 cut(s)	766
BpuMI	CCSGG	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	4 cut(s)	406, 412, 482, 608
BsaWI	WCCGGW	1 cut(s)	1207
Bsc4I	CCNNNNNNNGG	5 cut(s)	140, 354, 533, 875, 1188
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	4 cut(s)	286, 586, 749, 822
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	609, 785
BseDI	CCNNGG	4 cut(s)	406, 412, 482, 608
BseGI	GGATG	1 cut(s)	1071
BseLI	CCNNNNNNNGG	5 cut(s)	140, 354, 533, 875, 1188
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	524, 787, 873
BseNI	ACTGG	4 cut(s)	286, 586, 749, 822
BseXI	GCAGC	7 cut(s)	172, 226, 714, 745, 958, 970, 973
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	3 cut(s)	411, 738, 1203
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	1076
BsiSI	CCGG	4 cut(s)	134, 189, 965, 1208
BslFI	GGGAC	1 cut(s)	1115
BslI	CCNNNNNNNGG	5 cut(s)	140, 354, 533, 875, 1188
BsmAI	GTCTC	2 cut(s)	383, 1181
BsmFI	GGGAC	1 cut(s)	1115
BsnI	GGCC	3 cut(s)	411, 738, 1203
Bso31I	GGTCTC	1 cut(s)	1181
Bsp1286I	GDGCHC	1 cut(s)	1076
Bsp143I	GATC	3 cut(s)	259, 357, 394
Bsp1720I	GCTNAGC	1 cut(s)	766
BspACI	CCGC	4 cut(s)	713, 761, 1127, 1167
BspANI	GGCC	3 cut(s)	411, 738, 1203
BspCNI	CTCAG	3 cut(s)	523, 786, 872
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	4 cut(s)	95, 177, 346, 1131
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	1181
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	4 cut(s)	286, 586, 749, 822
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	4 cut(s)	406, 412, 482, 608
BssMI	GATC	3 cut(s)	259, 357, 394
BssT1I	CCWWGG	3 cut(s)	406, 412, 482
Bst2UI	CCWGG	2 cut(s)	609, 785
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	900
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	6 cut(s)	473, 732, 736, 740, 763, 907
BstDEI	CTNAG	5 cut(s)	510, 766, 773, 859, 1120
BstF5I	GGATG	1 cut(s)	1071
BstH2I	RGCGCY	1 cut(s)	1163
BstHHI	GCGC	1 cut(s)	1162
BstKTI	GATC	3 cut(s)	262, 360, 397
BstMAI	GTCTC	2 cut(s)	383, 1181
BstMBI	GATC	3 cut(s)	259, 357, 394
BstMWI	GCNNNNNNNGC	6 cut(s)	248, 575, 767, 980, 992, 1152
BstNI	CCWGG	2 cut(s)	609, 785
BstNSI	RCATGY	1 cut(s)	983
BstSCI	CCNGG	3 cut(s)	607, 783, 963
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	7 cut(s)	172, 226, 714, 745, 958, 970, 973
BstX2I	RGATCY	3 cut(s)	259, 357, 394
BstYI	RGATCY	3 cut(s)	259, 357, 394
BsuRI	GGCC	3 cut(s)	411, 738, 1203
BtsCI	GGATG	1 cut(s)	1071
BtsI	GCAGTG	1 cut(s)	1177
BtsIMutI	CAGTG	2 cut(s)	867, 1177
Cac8I	GCNNGC	6 cut(s)	473, 732, 736, 740, 763, 907
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	1162
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	176, 947, 1129
Csp6I	GTAC	3 cut(s)	514, 815, 1044
CviAII	CATG	6 cut(s)	171, 280, 424, 673, 980, 1156
CviQI	GTAC	3 cut(s)	514, 815, 1044
DdeI	CTNAG	5 cut(s)	510, 766, 773, 859, 1120
DpnI	GATC	3 cut(s)	261, 359, 396
DpnII	GATC	3 cut(s)	259, 357, 394
DriI	GACNNNNNGTC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	900
Eam1105I	GACNNNNNGTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	900
Ecl136II	GAGCTC	1 cut(s)	1074
Eco130I	CCWWGG	3 cut(s)	406, 412, 482
Eco147I	AGGCCT	1 cut(s)	1203
Eco24I	GRGCYC	1 cut(s)	1076
Eco31I	GGTCTC	1 cut(s)	1181
Eco32I	GATATC	1 cut(s)	1020
Eco47I	GGWCC	3 cut(s)	176, 947, 1129
Eco53kI	GAGCTC	1 cut(s)	1074
Eco57I	CTGAAG	1 cut(s)	948
EcoICRI	GAGCTC	1 cut(s)	1074
EcoRII	CCWGG	2 cut(s)	607, 783
EcoRV	GATATC	1 cut(s)	1020
EcoT14I	CCWWGG	3 cut(s)	406, 412, 482
EcoT22I	ATGCAT	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	1076
ErhI	CCWWGG	3 cut(s)	406, 412, 482
FaeI	CATG	6 cut(s)	174, 283, 427, 676, 983, 1159
FalI	AAGNNNNNCTT	2 cut(s)	1006, 1038
FaqI	GGGAC	1 cut(s)	1115
FatI	CATG	6 cut(s)	170, 279, 423, 672, 979, 1155
FauI	CCCGC	1 cut(s)	754
Fnu4HI	GCNGC	8 cut(s)	186, 240, 728, 759, 972, 984, 987, 1168
FokI	GGATG	1 cut(s)	1078
FriOI	GRGCYC	1 cut(s)	1076
Fsp4HI	GCNGC	8 cut(s)	186, 240, 728, 759, 972, 984, 987, 1168
FspBI	CTAG	4 cut(s)	15, 273, 533, 1094
GlaI	GCGC	1 cut(s)	1161
GluI	GCNGC	8 cut(s)	186, 240, 728, 759, 972, 984, 987, 1168
GsuI	CTGGAG	2 cut(s)	276, 1210
HaeII	RGCGCY	1 cut(s)	1163
HaeIII	GGCC	3 cut(s)	411, 738, 1203
HapII	CCGG	4 cut(s)	134, 189, 965, 1208
HhaI	GCGC	1 cut(s)	1162
Hin1II	CATG	6 cut(s)	174, 283, 427, 676, 983, 1159
Hin6I	GCGC	1 cut(s)	1160
HinP1I	GCGC	1 cut(s)	1160
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HindIII	AAGCTT	2 cut(s)	54, 560
HinfI	GANTC	2 cut(s)	70, 1031
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	4 cut(s)	134, 189, 965, 1208
HphI	GGTGA	4 cut(s)	131, 394, 880, 1040
Hpy166II	GTNNAC	2 cut(s)	447, 843
Hpy188I	TCNGA	3 cut(s)	180, 312, 928
Hpy188III	TCNNGA	5 cut(s)	15, 107, 255, 673, 1189
Hpy8I	GTNNAC	2 cut(s)	447, 843
HpyAV	CCTTC	3 cut(s)	133, 1143, 1214
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	3 cut(s)	111, 443, 680
HpyF10VI	GCNNNNNNNGC	6 cut(s)	248, 575, 767, 980, 992, 1152
HpyF3I	CTNAG	5 cut(s)	510, 766, 773, 859, 1120
HpySE526I	ACGT	3 cut(s)	111, 443, 680
Hsp92II	CATG	6 cut(s)	174, 283, 427, 676, 983, 1159
HspAI	GCGC	1 cut(s)	1160
KspAI	GTTAAC	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	259, 357, 394
LmnI	GCTCC	2 cut(s)	99, 695
Lsp1109I	GCAGC	7 cut(s)	172, 226, 714, 745, 958, 970, 973
LweI	GCATC	6 cut(s)	260, 458, 543, 629, 745, 1056
MaeI	CTAG	4 cut(s)	15, 273, 533, 1094
MaeII	ACGT	3 cut(s)	111, 443, 680
MaeIII	GTNAC	2 cut(s)	376, 862
MalI	GATC	3 cut(s)	261, 359, 396
MboI	GATC	3 cut(s)	259, 357, 394
MboII	GAAGA	7 cut(s)	75, 156, 186, 254, 467, 823, 887
MflI	RGATCY	3 cut(s)	259, 357, 394
MhlI	GDGCHC	1 cut(s)	1076
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	7 cut(s)	123, 156, 300, 339, 804, 882, 953
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	4 cut(s)	84, 110, 336, 431
Mox20I	TGGCCA	1 cut(s)	738
Mph1103I	ATGCAT	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	3 cut(s)	41, 446, 956
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	4 cut(s)	134, 189, 965, 1208
MspR9I	CCNGG	3 cut(s)	609, 785, 965
MvaI	CCWGG	2 cut(s)	609, 785
MwoI	GCNNNNNNNGC	6 cut(s)	248, 575, 767, 980, 992, 1152
NciI	CCSGG	1 cut(s)	965
NdeII	GATC	3 cut(s)	259, 357, 394
NlaIII	CATG	6 cut(s)	174, 283, 427, 676, 983, 1159
NlaIV	GGNNCC	4 cut(s)	95, 177, 346, 1131
NmeAIII	GCCGAG	1 cut(s)	1055
NmuCI	GTSAC	1 cut(s)	862
NsiI	ATGCAT	1 cut(s)	253
NspI	RCATGY	1 cut(s)	983
PagI	TCATGA	1 cut(s)	672
PceI	AGGCCT	1 cut(s)	1203
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	1031
PkrI	GCNGC	8 cut(s)	187, 241, 729, 760, 973, 985, 988, 1169
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PshBI	ATTAAT	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	1076
Psp6I	CCWGG	2 cut(s)	607, 783
PspGI	CCWGG	2 cut(s)	607, 783
PspN4I	GGNNCC	4 cut(s)	95, 177, 346, 1131
PspPI	GGNCC	3 cut(s)	176, 947, 1129
PsuI	RGATCY	3 cut(s)	259, 357, 394
RsaI	GTAC	3 cut(s)	515, 816, 1045
RsaNI	GTAC	3 cut(s)	514, 815, 1044
SacI	GAGCTC	1 cut(s)	1076
SaqAI	TTAA	3 cut(s)	41, 446, 956
SatI	GCNGC	8 cut(s)	186, 240, 728, 759, 972, 984, 987, 1168
Sau3AI	GATC	3 cut(s)	259, 357, 394
Sau96I	GGNCC	3 cut(s)	176, 947, 1129
ScaI	AGTACT	1 cut(s)	816
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	609, 785, 965
SduI	GDGCHC	1 cut(s)	1076
SfaNI	GCATC	6 cut(s)	260, 458, 543, 629, 745, 1056
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	3 cut(s)	176, 947, 1129
Sse9I	AATT	7 cut(s)	123, 156, 300, 339, 804, 882, 953
SseBI	AGGCCT	1 cut(s)	1203
SsiI	CCGC	4 cut(s)	713, 761, 1127, 1167
SspMI	CTAG	4 cut(s)	15, 273, 533, 1094
SstI	GAGCTC	1 cut(s)	1076
StuI	AGGCCT	1 cut(s)	1203
StyD4I	CCNGG	3 cut(s)	607, 783, 963
StyI	CCWWGG	3 cut(s)	406, 412, 482
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	3 cut(s)	114, 446, 683
TasI	AATT	7 cut(s)	123, 156, 300, 339, 804, 882, 953
TatI	WGTACW	2 cut(s)	513, 814
TauI	GCSGC	1 cut(s)	1170
TfiI	GAWTC	1 cut(s)	1031
Tru1I	TTAA	3 cut(s)	41, 446, 956
Tru9I	TTAA	3 cut(s)	41, 446, 956
TscAI	CASTG	2 cut(s)	867, 1177
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	7 cut(s)	185, 239, 727, 758, 971, 983, 986
Tsp45I	GTSAC	1 cut(s)	862
TspRI	CASTG	2 cut(s)	867, 1177
VpaK11BI	GGWCC	3 cut(s)	176, 947, 1129
VspI	ATTAAT	1 cut(s)	956
XapI	RAATTY	1 cut(s)	123
XbaI	TCTAGA	1 cut(s)	14
XceI	RCATGY	1 cut(s)	983
XspI	CTAG	4 cut(s)	15, 273, 533, 1094
ZrmI	AGTACT	1 cut(s)	816
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.