MD02G1040100.v1.1

Sodium pyruvate cotransporter BASS2

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
3262985 .. 3267114
4130 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1040100.v1.1.491

Sequence Viewer

Length: 1254 bp
ATGTCGTCCTTATCGTCGAAATTTGCTCTCAAGGATTTCAAGCTGAGAACATGCGACGCTTTCTGCAGGCCAGCTGCTTCTTTATCTGCAAGGAGGCTGCAGTCTCATCTGGACTTAAGAGGTGAACTTTCTGTGCCTGAGAATGTAAGGTGCTGTGCGATCCAAAGCAAGAAATGGAGTCCCATCGTTGCGAAACCACCTTCTTCGATAATTCAAACATCAAGGAACCCCAAAGTTTTCTGCAAGGCTGCAACAAATTTATCTGGAGATCTTCCTAGTAGTACTCCTAGTGGGATGAACCTGTATGAGAAAATAATCGAAACTTTGACAACTCTATTTCCTGTGTGGGTCATATTGGGCACCATCCTTGGGATCTACAAGCCAGCTGCGGTAACTTGGTTGCAGACAGACCTTTTCACGCTTGGCCTTGGTTTCCTCATGCTTTCCATGGGGTTGACATTGACCTTTGAGGACTTTAGACGATGTTTGCGTAATCCTTGGACAGTGGGTGTAGGTTTTCTTGCACAGTACATGATCAAACCCCTACTAGGTTTTGTTATTGCCCTGACTCTCAAACTTTCTGCACCTATTGCGACTGGTCTTATCTTGGTCTCGTGCTGTCCTGGTGGTCAGGCATCAAATGTTGCAACTTATATCTCTAAGGGAAACGTAGCGCTTTCTGTTCTCATGACAACGTGTTCAACAATAGGAGCTATTATTATGACACCACTTCTTACCAAGCTTCTTGCTGGCCAGCTTGTTCCAGTTGATGCTGTGGGCCTGGCTCTCAGCACTTTCCAGGTTGTTTTAATGCCAACAATTGTAGGAGTACTGGCAAATGAGTTCTTCCCCAAATTCACTTCAAAAATAGCCGCGGTGACACCTTTAATTGGAGTAATGCTCACCACTCTACTCTGTGCCAGCCCGATCGGGCAAGTTTCGGAAGTCTTGAAAACACAAGGAGCGCAACTGATACTCCCGGTGGCTATTCTGCACGGTGCTGCATTTGGTATTGGTTACTGGATTTCGAAATTATCATTTGGTGAATCTACATCTCGTACCATATCCATAGAGTGTGGGATGCAGAGCTCAGCACTTGGATTTTTACTTGCTCAAAAACATTTTACAAACCCTCTTGTTGCCGTCCCTTCTGCTGTCAGCGTTGTTTGCATGGCGCTTGGTGGGAGTGCTCTTGCTGTCTTCTGGAGAAACAGACCAATTCCAATCGATGACAAGGATGATTTCAAGGAATGA

Protein Analysis

418

Amino Acids

44.55

Weight (kDa)

9.28

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF_like PF13593 115 - 381 2.4e-13 SBF-like CPA transporter family (DUF4137)
SBF PF01758 140 - 318 4.9e-54 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26900
fragaria_vesca FvH4_1g04160
malus_domestica MD02G1040100.v1.1
prunus_persica Prupe.7G235600_v2.0.a1 Prupe.7G235600_v2.0.a1 Prupe.7G235600_v2.0.a1
pyrus_communis pycom02g03340
rosa_chinensis RchiOBHm_Chr2g0089661
rosa_laevigata RLG00000016049
rosa_multiflora Rmu_sc0000665.1_g000024
rosa_roxburghii Rroxscaffold_2G00151680
rosa_rugosa Rorug02G0002500 Rorug02G0002500
rosa_samantha Rh2AG047800 Rh2CG048400
rosa_wichuraiana Rw2G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccII CGCG 1 cut(s) 875
AciI CCGC 3 cut(s) 389, 873, 875
AclWI GGATC 2 cut(s) 154, 380
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 3 cut(s) 20, 256, 854
AfaI GTAC 4 cut(s) 283, 530, 831, 1060
AfeI AGCGCT 1 cut(s) 675
AfiI CCNNNNNNNGG 3 cut(s) 369, 548, 890
AflII CTTAAG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 695
AgsI TTSAA 6 cut(s) 40, 215, 702, 864, 952, 1246
AjnI CCWGG 3 cut(s) 622, 780, 798
AluBI AGCT 7 cut(s) 43, 74, 386, 713, 742, 757, 1089
AluI AGCT 7 cut(s) 43, 74, 386, 713, 742, 757, 1089
Alw21I GWGCWC 2 cut(s) 1091, 1192
Alw26I GTCTC 2 cut(s) 108, 616
AlwI GGATC 2 cut(s) 154, 380
Aor51HI AGCGCT 1 cut(s) 675
AoxI GGCC 4 cut(s) 68, 424, 751, 778
ApeKI GCWGC 5 cut(s) 74, 97, 248, 386, 1001
ApoI RAATTY 3 cut(s) 20, 256, 854
AspLEI GCGC 3 cut(s) 676, 967, 1177
AspS9I GGNCC 1 cut(s) 778
AsuC2I CCSGG 1 cut(s) 980
AsuHPI GGTGA 4 cut(s) 134, 889, 895, 1055
AsuII TTCGAA 1 cut(s) 1028
BaeGI GKGCMC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 753
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 1091
BauI CACGAG 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 1192
Bbv12I GWGCWC 2 cut(s) 1091, 1192
BbvI GCAGC 5 cut(s) 61, 84, 235, 373, 988
BccI CCATC 2 cut(s) 191, 371
BceAI ACGGC 1 cut(s) 1127
BciT130I CCWGG 3 cut(s) 624, 782, 800
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 1 cut(s) 980
BcoDI GTCTC 2 cut(s) 108, 616
BfaI CTAG 3 cut(s) 276, 288, 548
BfmI CTRYAG 2 cut(s) 64, 98
BfoI RGCGCY 2 cut(s) 677, 1178
BfrI CTTAAG 1 cut(s) 115
BglII AGATCT 1 cut(s) 268
BisI GCNGC 6 cut(s) 75, 98, 249, 387, 873, 1002
BlpI GCTNAGC 1 cut(s) 1090
BlsI GCNGC 6 cut(s) 76, 99, 250, 388, 874, 1003
BmcAI AGTACT 2 cut(s) 283, 831
Bme1390I CCNGG 4 cut(s) 624, 782, 800, 980
BmgT120I GGNCC 1 cut(s) 778
BmiI GGNNCC 2 cut(s) 227, 361
BmrFI CCNGG 4 cut(s) 624, 782, 800, 980
BmsI GCATC 3 cut(s) 644, 760, 1071
BpiI GAAGAC 1 cut(s) 1192
BplI GAGNNNNNCTC 2 cut(s) 885, 917
BpmI CTGGAG 2 cut(s) 285, 1225
Bpu1102I GCTNAGC 1 cut(s) 1090
Bpu14I TTCGAA 1 cut(s) 1028
BpuEI CTTGAG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 980
Bsa29I ATCGAT 1 cut(s) 1227
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 5 cut(s) 367, 427, 447, 497, 873
BsaXI ACNNNNNCTCC 2 cut(s) 960, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 369, 548, 890
Bse1I ACTGG 4 cut(s) 601, 764, 837, 1025
BseBI CCWGG 3 cut(s) 624, 782, 800
BseCI ATCGAT 1 cut(s) 1227
BseDI CCNNGG 5 cut(s) 367, 427, 447, 497, 873
BseGI GGATG 4 cut(s) 300, 363, 1086, 1243
BseLI CCNNNNNNNGG 3 cut(s) 369, 548, 890
BseMII CTCAG 4 cut(s) 35, 129, 802, 1104
BseNI ACTGG 4 cut(s) 601, 764, 837, 1025
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 5 cut(s) 61, 84, 235, 373, 988
BsgI GTGCAG 2 cut(s) 567, 977
Bsh1236I CGCG 1 cut(s) 875
Bsh1285I CGRYCG 1 cut(s) 930
BshFI GGCC 4 cut(s) 70, 426, 753, 780
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 1227
BsiEI CGRYCG 1 cut(s) 930
BsiHKAI GWGCWC 2 cut(s) 1091, 1192
BsiSI CCGG 1 cut(s) 980
BslFI GGGAC 2 cut(s) 165, 1130
BslI CCNNNNNNNGG 3 cut(s) 369, 548, 890
BsmAI GTCTC 2 cut(s) 108, 616
BsmFI GGGAC 2 cut(s) 165, 1130
BsnI GGCC 4 cut(s) 70, 426, 753, 780
Bso31I GGTCTC 1 cut(s) 616
Bsp119I TTCGAA 1 cut(s) 1028
Bsp1286I GDGCHC 3 cut(s) 362, 1091, 1192
Bsp143I GATC 5 cut(s) 159, 268, 372, 534, 927
Bsp1720I GCTNAGC 1 cut(s) 1090
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 3 cut(s) 389, 873, 875
BspANI GGCC 4 cut(s) 70, 426, 753, 780
BspCNI CTCAG 4 cut(s) 36, 130, 801, 1103
BspDI ATCGAT 1 cut(s) 1227
BspFNI CGCG 1 cut(s) 875
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 2 cut(s) 227, 361
BspMAI CTGCAG 2 cut(s) 68, 102
BspPI GGATC 2 cut(s) 154, 380
BspT104I TTCGAA 1 cut(s) 1028
BspT107I GGYRCC 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 616
BsrI ACTGG 4 cut(s) 601, 764, 837, 1025
BssECI CCNNGG 5 cut(s) 367, 427, 447, 497, 873
BssMI GATC 5 cut(s) 159, 268, 372, 534, 927
BssSI CACGAG 1 cut(s) 613
BssT1I CCWWGG 4 cut(s) 367, 427, 447, 497
Bst2BI CACGAG 1 cut(s) 613
Bst2UI CCWGG 3 cut(s) 624, 782, 800
Bst4CI ACNGT 3 cut(s) 505, 528, 998
BstAFI CTTAAG 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 590
BstBI TTCGAA 1 cut(s) 1028
BstC8I GCNNGC 6 cut(s) 68, 72, 384, 751, 755, 922
BstDEI CTNAG 5 cut(s) 44, 138, 660, 788, 1090
BstDSI CCRYGG 2 cut(s) 447, 873
BstF5I GGATG 4 cut(s) 300, 363, 1086, 1243
BstFNI CGCG 1 cut(s) 875
BstH2I RGCGCY 2 cut(s) 677, 1178
BstHHI GCGC 3 cut(s) 676, 967, 1177
BstKTI GATC 5 cut(s) 162, 271, 375, 537, 930
BstMAI GTCTC 2 cut(s) 108, 616
BstMBI GATC 5 cut(s) 159, 268, 372, 534, 927
BstMCI CGRYCG 1 cut(s) 930
BstMWI GCNNNNNNNGC 2 cut(s) 590, 1167
BstNI CCWGG 3 cut(s) 624, 782, 800
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 4 cut(s) 622, 780, 798, 978
BstSFI CTRYAG 2 cut(s) 64, 98
BstSLI GKGCMC 1 cut(s) 362
BstUI CGCG 1 cut(s) 875
BstV1I GCAGC 5 cut(s) 61, 84, 235, 373, 988
BstV2I GAAGAC 1 cut(s) 1192
BstX2I RGATCY 2 cut(s) 268, 372
BstYI RGATCY 2 cut(s) 268, 372
Bsu15I ATCGAT 1 cut(s) 1227
BsuRI GGCC 4 cut(s) 70, 426, 753, 780
BsuTUI ATCGAT 1 cut(s) 1227
BtgI CCRYGG 2 cut(s) 447, 873
BtsCI GGATG 4 cut(s) 300, 363, 1086, 1243
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 6 cut(s) 68, 72, 384, 751, 755, 922
CciI TCATGA 1 cut(s) 687
CfoI GCGC 3 cut(s) 676, 967, 1177
Cfr13I GGNCC 1 cut(s) 778
Cfr42I CCGCGG 1 cut(s) 876
ClaI ATCGAT 1 cut(s) 1227
CseI GACGC 1 cut(s) 65
Csp6I GTAC 4 cut(s) 282, 529, 830, 1059
CviAII CATG 6 cut(s) 51, 439, 448, 532, 688, 1171
CviQI GTAC 4 cut(s) 282, 529, 830, 1059
DdeI CTNAG 5 cut(s) 44, 138, 660, 788, 1090
DpnI GATC 5 cut(s) 161, 270, 374, 536, 929
DpnII GATC 5 cut(s) 159, 268, 372, 534, 927
EaeI YGGCCR 1 cut(s) 751
Ecl136II GAGCTC 1 cut(s) 1089
Eco130I CCWWGG 4 cut(s) 367, 427, 447, 497
Eco24I GRGCYC 1 cut(s) 1091
Eco31I GGTCTC 1 cut(s) 616
Eco47III AGCGCT 1 cut(s) 675
Eco53kI GAGCTC 1 cut(s) 1089
EcoICRI GAGCTC 1 cut(s) 1089
EcoRII CCWGG 3 cut(s) 622, 780, 798
EcoT14I CCWWGG 4 cut(s) 367, 427, 447, 497
EcoT38I GRGCYC 1 cut(s) 1091
ErhI CCWWGG 4 cut(s) 367, 427, 447, 497
FaeI CATG 6 cut(s) 54, 442, 451, 535, 691, 1174
FaqI GGGAC 2 cut(s) 165, 1130
FatI CATG 6 cut(s) 50, 438, 447, 531, 687, 1170
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 6 cut(s) 75, 98, 249, 387, 873, 1002
FokI GGATG 4 cut(s) 307, 350, 1093, 1250
FriOI GRGCYC 1 cut(s) 1091
Fsp4HI GCNGC 6 cut(s) 75, 98, 249, 387, 873, 1002
FspBI CTAG 3 cut(s) 276, 288, 548
GlaI GCGC 3 cut(s) 675, 966, 1176
GluI GCNGC 6 cut(s) 75, 98, 249, 387, 873, 1002
GsuI CTGGAG 2 cut(s) 285, 1225
HaeII RGCGCY 2 cut(s) 677, 1178
HaeIII GGCC 4 cut(s) 70, 426, 753, 780
HapII CCGG 1 cut(s) 980
HgaI GACGC 1 cut(s) 65
HhaI GCGC 3 cut(s) 676, 967, 1177
Hin1II CATG 6 cut(s) 54, 442, 451, 535, 691, 1174
Hin6I GCGC 3 cut(s) 674, 965, 1175
HinP1I GCGC 3 cut(s) 674, 965, 1175
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 3 cut(s) 178, 568, 1046
HpaII CCGG 1 cut(s) 980
HphI GGTGA 4 cut(s) 134, 889, 895, 1055
Hpy166II GTNNAC 2 cut(s) 125, 456
Hpy188I TCNGA 1 cut(s) 943
Hpy188III TCNNGA 5 cut(s) 110, 264, 688, 949, 1204
Hpy8I GTNNAC 2 cut(s) 125, 456
Hpy99I CGWCG 2 cut(s) 19, 59
HpyAV CCTTC 2 cut(s) 210, 1158
HpyCH4III ACNGT 3 cut(s) 505, 528, 998
HpyCH4IV ACGT 2 cut(s) 669, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 1167
HpyF3I CTNAG 5 cut(s) 44, 138, 660, 788, 1090
HpySE526I ACGT 2 cut(s) 669, 695
Hsp92II CATG 6 cut(s) 54, 442, 451, 535, 691, 1174
HspAI GCGC 3 cut(s) 674, 965, 1175
Ksp22I TGATCA 1 cut(s) 534
KspI CCGCGG 1 cut(s) 876
Kzo9I GATC 5 cut(s) 159, 268, 372, 534, 927
LmnI GCTCC 2 cut(s) 710, 962
Lsp1109I GCAGC 5 cut(s) 61, 84, 235, 373, 988
LweI GCATC 3 cut(s) 644, 760, 1071
MaeI CTAG 3 cut(s) 276, 288, 548
MaeII ACGT 2 cut(s) 669, 695
MaeIII GTNAC 3 cut(s) 391, 877, 1016
MalI GATC 5 cut(s) 161, 270, 374, 536, 929
MboI GATC 5 cut(s) 159, 268, 372, 534, 927
MboII GAAGA 4 cut(s) 195, 263, 838, 1192
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 2 cut(s) 268, 372
MhlI GDGCHC 3 cut(s) 362, 1091, 1192
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 8 cut(s) 20, 210, 256, 819, 854, 888, 1031, 1218
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 2 cut(s) 187, 562
MnlI CCTC 5 cut(s) 87, 113, 446, 463, 1143
Mox20I TGGCCA 1 cut(s) 753
MscI TGGCCA 1 cut(s) 753
MseI TTAA 3 cut(s) 116, 809, 887
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 3 cut(s) 74, 386, 875
MspCI CTTAAG 1 cut(s) 115
MspI CCGG 1 cut(s) 980
MspR9I CCNGG 4 cut(s) 624, 782, 800, 980
MunI CAATTG 1 cut(s) 819
MvaI CCWGG 3 cut(s) 624, 782, 800
MvnI CGCG 1 cut(s) 875
MwoI GCNNNNNNNGC 2 cut(s) 590, 1167
NciI CCSGG 1 cut(s) 980
NcoI CCATGG 1 cut(s) 447
NdeII GATC 5 cut(s) 159, 268, 372, 534, 927
NlaIII CATG 6 cut(s) 54, 442, 451, 535, 691, 1174
NlaIV GGNNCC 2 cut(s) 227, 361
NmuCI GTSAC 1 cut(s) 877
NspI RCATGY 1 cut(s) 54
NspV TTCGAA 1 cut(s) 1028
PagI TCATGA 1 cut(s) 687
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 487
PfeI GAWTC 1 cut(s) 1046
PkrI GCNGC 6 cut(s) 76, 99, 250, 388, 874, 1003
Ple19I CGATCG 1 cut(s) 930
PleI GAGTC 2 cut(s) 186, 562
PpsI GAGTC 2 cut(s) 186, 562
Psp124BI GAGCTC 1 cut(s) 1091
Psp6I CCWGG 3 cut(s) 622, 780, 798
PspGI CCWGG 3 cut(s) 622, 780, 798
PspN4I GGNNCC 2 cut(s) 227, 361
PspPI GGNCC 1 cut(s) 778
PstI CTGCAG 2 cut(s) 68, 102
PsuI RGATCY 2 cut(s) 268, 372
PvuI CGATCG 1 cut(s) 930
PvuII CAGCTG 2 cut(s) 74, 386
RsaI GTAC 4 cut(s) 283, 530, 831, 1060
RsaNI GTAC 4 cut(s) 282, 529, 830, 1059
SacI GAGCTC 1 cut(s) 1091
SacII CCGCGG 1 cut(s) 876
SaqAI TTAA 3 cut(s) 116, 809, 887
SatI GCNGC 6 cut(s) 75, 98, 249, 387, 873, 1002
Sau3AI GATC 5 cut(s) 159, 268, 372, 534, 927
Sau96I GGNCC 1 cut(s) 778
ScaI AGTACT 2 cut(s) 283, 831
SchI GAGTC 2 cut(s) 187, 562
ScrFI CCNGG 4 cut(s) 624, 782, 800, 980
SduI GDGCHC 3 cut(s) 362, 1091, 1192
SfaNI GCATC 3 cut(s) 644, 760, 1071
SfcI CTRYAG 2 cut(s) 64, 98
Sfr303I CCGCGG 1 cut(s) 876
SfuI TTCGAA 1 cut(s) 1028
SgrBI CCGCGG 1 cut(s) 876
SmlI CTYRAG 2 cut(s) 29, 115
SmoI CTYRAG 2 cut(s) 29, 115
Sse9I AATT 8 cut(s) 20, 210, 256, 819, 854, 888, 1031, 1218
SsiI CCGC 3 cut(s) 389, 873, 875
SspMI CTAG 3 cut(s) 276, 288, 548
SstI GAGCTC 1 cut(s) 1091
StyD4I CCNGG 4 cut(s) 622, 780, 798, 978
StyI CCWWGG 4 cut(s) 367, 427, 447, 497
TaaI ACNGT 3 cut(s) 505, 528, 998
TaiI ACGT 2 cut(s) 672, 698
TaqI TCGA 5 cut(s) 17, 206, 318, 1028, 1227
TasI AATT 8 cut(s) 20, 210, 256, 819, 854, 888, 1031, 1218
TatI WGTACW 3 cut(s) 281, 528, 829
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 1 cut(s) 1046
Tru1I TTAA 3 cut(s) 116, 809, 887
Tru9I TTAA 3 cut(s) 116, 809, 887
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 5 cut(s) 74, 97, 248, 386, 1001
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 510
Vha464I CTTAAG 1 cut(s) 115
XapI RAATTY 3 cut(s) 20, 256, 854
XceI RCATGY 1 cut(s) 54
XspI CTAG 3 cut(s) 276, 288, 548
ZrmI AGTACT 2 cut(s) 283, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.