Rorug02G0002500

Transcriptional corepressor LEUNIG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000670
Physical Location & Seq
Forward (+)
252915 .. 255785
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0002500.1

Sequence Viewer

Length: 849 bp
ATGTCCTCTCAATTTTCATCATCATTGATTAGGACTAGGAGGAATCTCAATCTGCTGCCTTTGATTCGTCCCACAAGTAGAAGAAGGGTGTTCCTTGGTGGTGCCAACCAACTGAGGATGATGATGATGACGACGAAGAAGAAGAGAGAGCAGGGAGACCCCGAGAGTCGGGAGAACCACAAACCTCGTGGTGTTAACGAGCTTCAGCAACTCTTGCACAGCGACTCTACAGGTGGTGCTGCTGCTGCTGGTGATTGGGACAAGTGCTGGGAGCAAGGTCTCACCCCTTGGGATTTAGGACAGCCAACTCCTGTTATTGCTCATCTTCATAGGTTGGGAGCCCTTCCCAAGGGCAGGGCTCTTGTCCCTGGATGCGGCACTGGTTATGATGTTGTAGAGATTGCATGCCCTGAACGCCATGTTACCGGTTTAGACATTTCACACAATGCCATTAACAAGGCCCTCCAGTTGTTTTCCTCACTACCCACTGCAATGCATTTTACCTTCTTAAAGGTGGACTTTTTTACCTGGCATCCAACTGAATTGTTTGATCTCATATTTGATTATACGTTCTTCTGTGCTATTGAACCAGACATGAGATCAGCATGGGCACAAAAGATGAGGGATATCTTAAAACCAGATGGAGAGCTCATAACGCTAATGTTTCCCATCAGTGATCATCTTGGTGGACCCCCATACAAAGTGTCAGTTTCAGATTATGAAGAGGTGTTGCATCCCATGGGCTTTAAAGCAATCTCCATCATGGATAATCATCTGGCTGTCCTACCTCGCAAGGGACGAGAGAAGCTAGGAAGGTGGAAGAGGCCTGCAAGTAAATCCTCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

282

Amino Acids

31.79

Weight (kDa)

9.3

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPMT PF05724 82 - 251 4.4e-45 Thiopurine S-methyltransferase (TPMT)
Methyltransf_31 PF13847 123 - 219 2.1e-10 Methyltransferase domain
Methyltransf_11 PF08241 123 - 218 4.7e-08 Methyltransferase domain
Methyltransf_25 PF13649 124 - 215 1.4e-11 Methyltransferase domain
Methyltransf_12 PF08242 124 - 217 4.1e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AciI CCGC 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 5 cut(s) 168, 349, 354, 374, 794
AgeI ACCGGT 1 cut(s) 425
AgsI TTSAA 1 cut(s) 587
AjnI CCWGG 2 cut(s) 367, 527
AluBI AGCT 3 cut(s) 202, 649, 808
AluI AGCT 3 cut(s) 202, 649, 808
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 2 cut(s) 150, 284
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 2 cut(s) 459, 824
ApeKI GCWGC 4 cut(s) 55, 239, 242, 245
AsiGI ACCGGT 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 460, 689
AsuHPI GGTGA 2 cut(s) 263, 274
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 3 cut(s) 343, 361, 651
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 4 cut(s) 42, 226, 229, 232
BccI CCATC 3 cut(s) 635, 677, 767
BciT130I CCWGG 2 cut(s) 369, 529
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 150, 284
BfaI CTAG 2 cut(s) 36, 809
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 5 cut(s) 56, 240, 243, 246, 376
BlsI GCNGC 5 cut(s) 57, 241, 244, 247, 377
Bme1390I CCNGG 2 cut(s) 369, 529
Bme18I GGWCC 1 cut(s) 689
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 460, 689
BmiI GGNNCC 3 cut(s) 103, 340, 691
BmrFI CCNGG 2 cut(s) 369, 529
BmsI GCATC 3 cut(s) 362, 541, 742
BpmI CTGGAG 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 771
BsaI GGTCTC 2 cut(s) 150, 284
BsaJI CCNNGG 5 cut(s) 94, 287, 348, 367, 738
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 349, 354, 374, 794
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 2 cut(s) 385, 466
Bse3DI GCAATG 1 cut(s) 498
Bse8I GATNNNNATC 1 cut(s) 771
BseBI CCWGG 2 cut(s) 369, 529
BseDI CCNNGG 5 cut(s) 94, 287, 348, 367, 738
BseGI GGATG 4 cut(s) 123, 377, 532, 733
BseJI GATNNNNATC 1 cut(s) 771
BseLI CCNNNNNNNGG 5 cut(s) 168, 349, 354, 374, 794
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 385, 466
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 4 cut(s) 42, 226, 229, 232
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 2 cut(s) 461, 826
BshNI GGYRCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 651
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 4 cut(s) 54, 272, 350, 810
BslI CCNNNNNNNGG 5 cut(s) 168, 349, 354, 374, 794
BsmAI GTCTC 2 cut(s) 150, 284
BsmFI GGGAC 4 cut(s) 54, 272, 350, 810
BsnI GGCC 2 cut(s) 461, 826
Bso31I GGTCTC 2 cut(s) 150, 284
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 4 cut(s) 343, 361, 613, 651
Bsp143I GATC 3 cut(s) 550, 599, 676
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 1 cut(s) 375
BspANI GGCC 2 cut(s) 461, 826
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 3 cut(s) 103, 340, 691
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 2 cut(s) 150, 284
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 2 cut(s) 385, 466
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 5 cut(s) 94, 287, 348, 367, 738
BssMI GATC 3 cut(s) 550, 599, 676
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 4 cut(s) 94, 287, 348, 738
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 369, 529
Bst6I CTCTTC 3 cut(s) 137, 717, 815
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 406, 828
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 738
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 4 cut(s) 123, 377, 532, 733
BstKTI GATC 3 cut(s) 553, 602, 679
BstMAI GTCTC 2 cut(s) 150, 284
BstMBI GATC 3 cut(s) 550, 599, 676
BstMWI GCNNNNNNNGC 4 cut(s) 214, 245, 414, 655
BstNI CCWGG 2 cut(s) 369, 529
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 2 cut(s) 367, 527
BstSFI CTRYAG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 613
BstV1I GCAGC 4 cut(s) 42, 226, 229, 232
BsuRI GGCC 2 cut(s) 461, 826
BtgI CCRYGG 1 cut(s) 738
BtsCI GGATG 4 cut(s) 123, 377, 532, 733
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 3 cut(s) 378, 486, 679
Cac8I GCNNGC 2 cut(s) 406, 828
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 460, 689
CspAI ACCGGT 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 6 cut(s) 405, 419, 595, 606, 739, 763
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 552, 601, 678
DpnII GATC 3 cut(s) 550, 599, 676
DraI TTTAAA 1 cut(s) 748
Eam1104I CTCTTC 3 cut(s) 137, 717, 815
EarI CTCTTC 3 cut(s) 137, 717, 815
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 4 cut(s) 94, 287, 348, 738
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 3 cut(s) 343, 361, 651
Eco31I GGTCTC 2 cut(s) 150, 284
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 689
Eco53kI GAGCTC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 649
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 367, 527
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 4 cut(s) 94, 287, 348, 738
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 3 cut(s) 343, 361, 651
ErhI CCWWGG 4 cut(s) 94, 287, 348, 738
FaeI CATG 6 cut(s) 408, 422, 598, 609, 742, 766
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 4 cut(s) 54, 272, 350, 810
FatI CATG 6 cut(s) 404, 418, 594, 605, 738, 762
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 5 cut(s) 56, 240, 243, 246, 376
FokI GGATG 4 cut(s) 130, 384, 519, 720
FriOI GRGCYC 3 cut(s) 343, 361, 651
Fsp4HI GCNGC 5 cut(s) 56, 240, 243, 246, 376
FspBI CTAG 2 cut(s) 36, 809
GluI GCNGC 5 cut(s) 56, 240, 243, 246, 376
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 2 cut(s) 461, 826
HapII CCGG 1 cut(s) 426
Hin1II CATG 6 cut(s) 408, 422, 598, 609, 742, 766
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 4 cut(s) 43, 64, 166, 224
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 1 cut(s) 426
HphI GGTGA 2 cut(s) 263, 274
Hpy166II GTNNAC 3 cut(s) 196, 517, 689
Hpy188I TCNGA 1 cut(s) 715
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 3 cut(s) 196, 517, 689
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 4 cut(s) 78, 353, 514, 807
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 6 cut(s) 217, 404, 491, 496, 733, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 245, 414, 655
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 569
Hsp92II CATG 6 cut(s) 408, 422, 598, 609, 742, 766
Ksp22I TGATCA 1 cut(s) 676
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 3 cut(s) 550, 599, 676
LmnI GCTCC 2 cut(s) 271, 338
Lsp1109I GCAGC 4 cut(s) 42, 226, 229, 232
LweI GCATC 3 cut(s) 362, 541, 742
MaeI CTAG 2 cut(s) 36, 809
MaeII ACGT 1 cut(s) 569
MaeIII GTNAC 1 cut(s) 421
MalI GATC 3 cut(s) 552, 601, 678
MboI GATC 3 cut(s) 550, 599, 676
MboII GAAGA 8 cut(s) 93, 148, 151, 154, 317, 565, 734, 832
MhlI GDGCHC 4 cut(s) 343, 361, 613, 651
MluCI AATT 2 cut(s) 11, 542
MlyI GAGTC 2 cut(s) 175, 218
MmeI TCCRAC 1 cut(s) 560
Mph1103I ATGCAT 1 cut(s) 498
MseI TTAA 5 cut(s) 195, 453, 509, 632, 747
MslI CAYNNNNRTG 2 cut(s) 491, 684
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 2 cut(s) 369, 529
MvaI CCWGG 2 cut(s) 369, 529
MwoI GCNNNNNNNGC 4 cut(s) 214, 245, 414, 655
NcoI CCATGG 1 cut(s) 738
NdeII GATC 3 cut(s) 550, 599, 676
NlaIII CATG 6 cut(s) 408, 422, 598, 609, 742, 766
NlaIV GGNNCC 3 cut(s) 103, 340, 691
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 408
PaeI GCATGC 1 cut(s) 408
PceI AGGCCT 1 cut(s) 826
PcsI WCGNNNNNNNCGW 1 cut(s) 796
PfeI GAWTC 2 cut(s) 43, 64
PinAI ACCGGT 1 cut(s) 425
PkrI GCNGC 5 cut(s) 57, 241, 244, 247, 377
PleI GAGTC 2 cut(s) 174, 218
PpsI GAGTC 2 cut(s) 174, 218
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 367, 527
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 367, 527
PspN4I GGNNCC 3 cut(s) 103, 340, 691
PspPI GGNCC 2 cut(s) 460, 689
RseI CAYNNNNRTG 2 cut(s) 491, 684
SacI GAGCTC 1 cut(s) 651
SaqAI TTAA 5 cut(s) 195, 453, 509, 632, 747
SatI GCNGC 5 cut(s) 56, 240, 243, 246, 376
Sau3AI GATC 3 cut(s) 550, 599, 676
Sau96I GGNCC 2 cut(s) 460, 689
SchI GAGTC 2 cut(s) 175, 218
ScrFI CCNGG 2 cut(s) 369, 529
SduI GDGCHC 4 cut(s) 343, 361, 613, 651
SfaNI GCATC 3 cut(s) 362, 541, 742
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 689
SmiMI CAYNNNNRTG 2 cut(s) 491, 684
SphI GCATGC 1 cut(s) 408
Sse9I AATT 2 cut(s) 11, 542
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 1 cut(s) 375
SspMI CTAG 2 cut(s) 36, 809
SstI GAGCTC 1 cut(s) 651
StuI AGGCCT 1 cut(s) 826
StyD4I CCNGG 2 cut(s) 367, 527
StyI CCWWGG 4 cut(s) 94, 287, 348, 738
TaiI ACGT 1 cut(s) 572
TasI AATT 2 cut(s) 11, 542
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 2 cut(s) 43, 64
Tru1I TTAA 5 cut(s) 195, 453, 509, 632, 747
Tru9I TTAA 5 cut(s) 195, 453, 509, 632, 747
TscAI CASTG 3 cut(s) 385, 493, 679
TseI GCWGC 4 cut(s) 55, 239, 242, 245
TspDTI ATGAA 3 cut(s) 6, 317, 735
TspRI CASTG 3 cut(s) 385, 493, 679
VpaK11BI GGWCC 1 cut(s) 689
XagI CCTNNNNNAGG 1 cut(s) 347
XceI RCATGY 1 cut(s) 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XspI CTAG 2 cut(s) 36, 809
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.