Rh2BG046500

Transcriptional corepressor LEUNIG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000670
Physical Location & Seq
Forward (+)
3300144 .. 3307316
7173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG046500.1

Sequence Viewer

Length: 2565 bp
ATGGCTCAGGCCAATTGGGAAGCTGATAAAATGTTGGATGTGTATATATATGATTACCTTCTGAAGAGAAATTTACATGCTTCTGCAAAGGCATTTCAAGCTGAAGGAAAAGTTTCTACAGATCCTGTAGCTATTGATGCACCCGGTGGCTTTCTTTTCGAATGGTGGTCTGTCTTCTGGGACATATTCATCGCTAGGACGAATGAAAAGCACTCTGAAGCAGCTGCATCTTATATTGAGACTCAAGTGAACAAAGCTCGGGAGCTGCAACAGAAGCCTCAGCAGCATCCGCAAATGCAAATGCAGCATCTTTTGCAAAGGCATGCTGCTCAGCAGCAGCAGCAGCAGCATCAACAACAGCAACAACAACAACACCAGCAACAACAACACCCGCAACACCAGCAGCAGCAGCAGCAGCAAAGACGAGATGGGACCCAACTTCTTAATGGAACTTCCAATGGGCTTGTTGGCACTGATCCTCTTTCGAGGCAGAACTCTGCAACTGCAAATGTCATGGCAACAAAAATGTACGAGGACAGATTAAAGCCTCCCATACAGAGGGATGCTTTGGATGATGCGGCTATGAAGCAAAGGTTAGGTGACAATATGAATCAGCTTATGGATTCAAATCGTGCATCATTGGTGAAAGTAGCCACAGCAGGTGGCCAGTCTTCCGGTCAAATGCTGCATGGTACACCTGGAGGTATGTTGGGGAATCTTCAACAAGCTCACAATCGGAGTCAGCAACTTCCTGGATTGATGCAGGACATAAAGAGTGAGATGATGAACCCCAGAGCTGCTGGTCCAGAAGGATCATTGATTGGTCTTCATGGATCAAATGAAGGCAGTAGCAATTTGACTCTGAAGGGGTGGCCTTTAACGGTTCGACCTGGAATTCTTCAGCAGCAAAATTCCATGATGCAGTCCTCTCAGCCCTTTAATCAGCTTCAGCTCCAGCAACAACTTATACTTCAGGCACAACAAAATTTAGCTTCCCCATCTACCAATGACTTGGAAACTAGAAGGCTATCGATGCTCCTCAATAGAAATATACCTAACGTTGATGGACCTAACGTTGGATCGCCTGTTCAAGTGGGTTGCCCTGTAATGCCTGGTGCAGATGCAGATATGCTTATGAAGCAACAGCAGCTGCAAAGCAACAATCAACACCAACAACAGCAACAGTATTCACAGCATCCATTTTCAAGTCAACACCCTCAGAGTTCGAATCAACACATCCAGCAGCAAGAAAAGATCACTGGTGCTGGCAGCTTTACAGCTGGTGGTAGCATGTCTAACTCCTTTCAAGGCAATGATCAGGCTCCAAGGAATCAAATGGGGCGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCTGCCAATAGTTCAGGGACTGCTAATACCACTGGACCATCCCCCAGTTCACCTTCAACGCCTTCTACTCACACGGCAGGAGATGCGAACTCTGTGCCAACTTTGGCCCATAATAGCGGTTCATCGAAGTCTCTGCTTATGTTTGCTTCTGATGGTCTAGGCTCAGTTGCCTCGGTGCCAAATAAATTGAATGATATGGACCGATTTGTGGATGATGGATCTTTAGAGGATAATGTTGAATCATTCTTATCACATGATGATGCTGACCCTAGGGATAGAGTTGCTCGGTGTTCAGATGTCAGCAAAGGCTTCACTTTTTCGGAAGTTGGGGCTATTACTGCAAGTTCAAGTAAAGTCGAGTGCTGTCACTTCTCAGCAGATGGGAAAACACTTGCCACTGGTGGGCATGATCGAAAGGCTGTATTGTGGTCTACAGAGTCCTTCACTGTAAAGTCTACGCTTGAAGAGCATTCTCAGTGGATAACGGATGTTCGATTCAGTCCTAGTATGTCAAGGCTAGCTACATCTTCCGCTGACAAAACTGTCAGGGTCTGGGATGTTGATAATCCTGGCTATTCACTTCGTACTTTTATGGGACATTCTACAACTGTTATGTCACTTGACTTCCACCCTACTAAAGAGGATCTTCTGTGCTCTTGTGATAACAACAGTGAGATAAGATACTGGAGTATCAAGAATGGTAGTTGTATTGGAGTTTCCAAGGGTGGTGCAACTCAGATGAGGTTTCAACCTCGTCTTGGAAGGATGCTTGCTGCTGCAGGTGATACTCTTGTATCCATAATTGATGTAGAGACCGAATGTTGCACGGTTAAATTACAGGGTCATAAGAACCTTGTCAATTCTGTGTGCTGGGATTCTTCTGGTGAGTATCTAGCCTCTGTGAGTGATGACTCGGTTAGAGTATGGGCAGTTGGCTCCAGTAGCAAAGGTGAATGCCTTTACGAAGTAAGCTGTTCTGGCAATAAATTTCAGACATGCGTCTTCCATCCTACTTATCCATCATTGTTGGTAATCGGCTGTTATGAGACATTGGAACTTTGGAACATGAGCGAGAACAAGACAATGACCTTGCATGCACATGACAATCTAGTATCTTCTTTGGCAGCGTCAAGTTCTACTGGCATGGTAGCTTCAGCTAGCCATGATAAGTTCGTGAAGCTATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

854

Amino Acids

93.53

Weight (kDa)

6.42

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 2.4e-07 LisH
WD40_Gbeta PF25391 561 - 697 9.4e-12 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 563 - 626 7.6e-09 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 563 - 767 4.4e-16 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 565 - 687 4.8e-13 TEP-1 second beta-propeller
EIF3I PF24805 565 - 647 1.2e-06 EIF3I
WD40_WDHD1_1st PF24817 566 - 647 7.7e-12 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 567 - 695 6.7e-16 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 567 - 768 6.1e-15 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 570 - 693 4.1e-19 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 572 - 689 1.1e-22 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 572 - 696 3.6e-26 WDR5 beta-propeller domain
WD40_Prp19 PF24814 573 - 768 1.4e-31 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 574 - 681 6.2e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML PF23409 575 - 694 4.9e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 581 - 647 3.4e-07 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 609 - 644 3.3e-09 WD domain, G-beta repeat
WDR55 PF24796 609 - 854 2.3e-12 WDR55
Beta-prop_THOC3 PF25174 615 - 854 4.3e-38 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 626 - 733 5.4e-07 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 676 - 773 9.9e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 683 - 813 1.2e-12 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 701 - 853 9e-24 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 703 - 854 1.1e-13 WDHD1 first WD40 domain
WD40_Prp19 PF24814 704 - 853 2.2e-14 Prp19 WD40 domain
WD40_Gbeta PF25391 705 - 853 1.1e-07 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 713 - 853 1.7e-08 CDC20/Fizzy WD40 domain
WD40 PF00400 733 - 767 1.1e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 744 - 854 8.7e-08 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 650, 2144
AasI GACNNNNNNGTC 1 cut(s) 1916
Acc36I ACCTGC 2 cut(s) 650, 2144
AccB1I GGYRCC 1 cut(s) 1549
AccI GTMKAC 2 cut(s) 1805, 1829
AciI CCGC 5 cut(s) 290, 392, 578, 1491, 1905
AclI AACGTT 2 cut(s) 1059, 1074
AclWI GGATC 7 cut(s) 116, 470, 820, 841, 1087, 1600, 2025
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 5 cut(s) 70, 894, 910, 985, 2360
AcuI CTGAAG 9 cut(s) 83, 123, 237, 884, 884, 932, 956, 1353, 2511
AdeI CACNNNGTG 1 cut(s) 146
AfaI GTAC 3 cut(s) 530, 694, 1960
AfiI CCNNNNNNNGG 5 cut(s) 558, 1076, 1582, 1776, 2132
AjnI CCWGG 5 cut(s) 697, 751, 889, 1111, 1942
AloI GAACNNNNNNTCC 2 cut(s) 1071, 1103
Alw21I GWGCWC 1 cut(s) 2030
Alw26I GTCTC 4 cut(s) 233, 1509, 2180, 2414
AlwI GGATC 7 cut(s) 116, 470, 820, 841, 1087, 1600, 2025
AlwNI CAGNNNCTG 5 cut(s) 125, 1150, 1376, 1394, 1926
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 4 cut(s) 9, 664, 872, 1479
ApoI RAATTY 5 cut(s) 70, 894, 910, 985, 2360
Asp700I GAANNNNTTC 1 cut(s) 112
AspA2I CCTAGG 1 cut(s) 1643
AspS9I GGNCC 7 cut(s) 432, 803, 1067, 1373, 1409, 1480, 1573
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 6 cut(s) 611, 655, 1416, 2168, 2270, 2336
AsuII TTCGAA 2 cut(s) 159, 1226
AsuNHI GCTAGC 2 cut(s) 1891, 2531
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 6 cut(s) 432, 803, 1067, 1373, 1409, 1573
AvrII CCTAGG 1 cut(s) 1643
BaeI ACNNNNGTAYC 8 cut(s) 2047, 2047, 2080, 2080, 2151, 2151, 2184, 2184
BalI TGGCCA 1 cut(s) 666
BanI GGYRCC 1 cut(s) 1549
BbsI GAAGAC 4 cut(s) 166, 663, 818, 2368
Bbv12I GWGCWC 1 cut(s) 2030
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 9 cut(s) 422, 1006, 1058, 1420, 1520, 1583, 1748, 2388, 2401
BceAI ACGGC 1 cut(s) 1464
BcgI CGANNNNNNTGC 4 cut(s) 1450, 1484, 1489, 1523
BciT130I CCWGG 5 cut(s) 699, 753, 891, 1113, 1944
BciVI GTATCC 1 cut(s) 2179
BclI TGATCA 1 cut(s) 1315
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 4 cut(s) 233, 1509, 2180, 2414
BfaI CTAG 9 cut(s) 195, 1020, 1532, 1644, 1878, 1892, 2267, 2483, 2532
BfmI CTRYAG 4 cut(s) 117, 126, 1806, 2151
BfuAI ACCTGC 2 cut(s) 650, 2144
BfuI GTATCC 1 cut(s) 2179
BlnI CCTAGG 1 cut(s) 1643
BlpI GCTNAGC 1 cut(s) 330
Bme1390I CCNGG 6 cut(s) 144, 699, 753, 891, 1113, 1944
Bme18I GGWCC 6 cut(s) 432, 803, 1067, 1373, 1409, 1573
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 7 cut(s) 432, 803, 1067, 1373, 1409, 1480, 1573
BmiI GGNNCC 5 cut(s) 433, 434, 1323, 1551, 2311
BmrFI CCNGG 6 cut(s) 144, 699, 753, 891, 1113, 1944
BmrI ACTGGG 1 cut(s) 1413
BmtI GCTAGC 2 cut(s) 1895, 2535
BmuI ACTGGG 1 cut(s) 1413
BoxI GACNNNNGTC 1 cut(s) 2372
BpiI GAAGAC 4 cut(s) 166, 663, 818, 2368
BpmI CTGGAG 4 cut(s) 720, 938, 2080, 2296
Bpu10I CCTNAGC 2 cut(s) 6, 279
Bpu1102I GCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 2 cut(s) 159, 1226
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 1031
BsaBI GATNNNNATC 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 2180
BsaJI CCNNGG 4 cut(s) 1325, 1545, 1643, 2094
BsaWI WCCGGW 1 cut(s) 674
Bsc4I CCNNNNNNNGG 5 cut(s) 558, 1076, 1582, 1776, 2132
Bse1I ACTGG 9 cut(s) 667, 1264, 1358, 1411, 1419, 1777, 2063, 2313, 2518
Bse3DI GCAATG 1 cut(s) 1318
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 5 cut(s) 699, 753, 891, 1113, 1944
BseCI ATCGAT 1 cut(s) 1031
BseDI CCNNGG 4 cut(s) 1325, 1545, 1643, 2094
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 5 cut(s) 558, 1076, 1582, 1776, 2132
BseMI GCAATG 1 cut(s) 1318
BseMII CTCAG 9 cut(s) 20, 293, 344, 944, 1232, 1551, 1761, 1862, 2123
BseNI ACTGG 9 cut(s) 667, 1264, 1358, 1411, 1419, 1777, 2063, 2313, 2518
BseRI GAGGAG 1 cut(s) 1028
BseYI CCCAGC 1 cut(s) 2244
BsgI GTGCAG 1 cut(s) 1137
BshFI GGCC 4 cut(s) 11, 666, 874, 1481
BshNI GGYRCC 1 cut(s) 1549
BshVI ATCGAT 1 cut(s) 1031
BsiHKAI GWGCWC 1 cut(s) 2030
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 144, 675
BslFI GGGAC 4 cut(s) 194, 445, 1405, 1983
BslI CCNNNNNNNGG 5 cut(s) 558, 1076, 1582, 1776, 2132
BsmAI GTCTC 4 cut(s) 233, 1509, 2180, 2414
BsmFI GGGAC 4 cut(s) 194, 445, 1405, 1983
BsmI GAATGC 2 cut(s) 1843, 2333
BsnI GGCC 4 cut(s) 11, 666, 874, 1481
Bso31I GGTCTC 1 cut(s) 2180
BsoBI CYCGRG 1 cut(s) 258
Bsp119I TTCGAA 2 cut(s) 159, 1226
Bsp1286I GDGCHC 1 cut(s) 2030
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 5 cut(s) 290, 392, 578, 1491, 1905
BspANI GGCC 4 cut(s) 11, 666, 874, 1481
BspCNI CTCAG 9 cut(s) 19, 292, 343, 943, 1231, 1550, 1760, 1861, 2122
BspDI ATCGAT 1 cut(s) 1031
BspLI GGNNCC 5 cut(s) 433, 434, 1323, 1551, 2311
BspMAI CTGCAG 1 cut(s) 2155
BspMI ACCTGC 2 cut(s) 650, 2144
BspOI GCTAGC 2 cut(s) 1895, 2535
BspPI GGATC 7 cut(s) 116, 470, 820, 841, 1087, 1600, 2025
BspQI GCTCTTC 1 cut(s) 1833
BspT104I TTCGAA 2 cut(s) 159, 1226
BspT107I GGYRCC 1 cut(s) 1549
BspTNI GGTCTC 1 cut(s) 2180
BsrDI GCAATG 1 cut(s) 1318
BsrI ACTGG 9 cut(s) 667, 1264, 1358, 1411, 1419, 1777, 2063, 2313, 2518
BssECI CCNNGG 4 cut(s) 1325, 1545, 1643, 2094
BssT1I CCWWGG 3 cut(s) 1325, 1643, 2094
Bst2UI CCWGG 5 cut(s) 699, 753, 891, 1113, 1944
Bst4CI ACNGT 7 cut(s) 883, 1185, 1822, 1918, 1984, 2045, 2203
Bst6I CTCTTC 2 cut(s) 59, 1833
BstAPI GCANNNNNTGC 2 cut(s) 313, 1457
BstBI TTCGAA 2 cut(s) 159, 1226
BstC8I GCNNGC 6 cut(s) 324, 1267, 1893, 2145, 2469, 2533
BstDEI CTNAG 9 cut(s) 6, 279, 330, 930, 1218, 1537, 1747, 1848, 2109
BstMAI GTCTC 4 cut(s) 233, 1509, 2180, 2414
BstNI CCWGG 5 cut(s) 699, 753, 891, 1113, 1944
BstNSI RCATGY 5 cut(s) 80, 326, 1294, 2373, 2471
BstPAI GACNNNNGTC 1 cut(s) 2372
BstSCI CCNGG 6 cut(s) 142, 697, 751, 889, 1111, 1942
BstSFI CTRYAG 4 cut(s) 117, 126, 1806, 2151
BstV2I GAAGAC 4 cut(s) 166, 663, 818, 2368
BstX2I RGATCY 3 cut(s) 121, 1592, 2017
BstXI CCANNNNNNTGG 1 cut(s) 1012
BstYI RGATCY 3 cut(s) 121, 1592, 2017
Bsu15I ATCGAT 1 cut(s) 1031
BsuI GTATCC 1 cut(s) 2179
BsuRI GGCC 4 cut(s) 11, 666, 874, 1481
BsuTUI ATCGAT 1 cut(s) 1031
BtgZI GCGATG 1 cut(s) 175
BtsIMutI CAGTG 8 cut(s) 471, 1257, 1365, 1404, 1770, 1818, 1856, 2050
BveI ACCTGC 2 cut(s) 650, 2144
Cac8I GCNNGC 6 cut(s) 324, 1267, 1893, 2145, 2469, 2533
CaiI CAGNNNCTG 5 cut(s) 125, 1150, 1376, 1394, 1926
Cfr13I GGNCC 7 cut(s) 432, 803, 1067, 1373, 1409, 1480, 1573
ClaI ATCGAT 1 cut(s) 1031
CseI GACGC 2 cut(s) 2362, 2490
Csp6I GTAC 3 cut(s) 529, 693, 1959
CviQI GTAC 3 cut(s) 529, 693, 1959
DdeI CTNAG 9 cut(s) 6, 279, 330, 930, 1218, 1537, 1747, 1848, 2109
DraIII CACNNNGTG 1 cut(s) 146
DrdI GACNNNNNNGTC 1 cut(s) 1916
DseDI GACNNNNNNGTC 1 cut(s) 1916
EaeI YGGCCR 1 cut(s) 664
Eam1104I CTCTTC 2 cut(s) 59, 1833
EarI CTCTTC 2 cut(s) 59, 1833
Eco130I CCWWGG 3 cut(s) 1325, 1643, 2094
Eco31I GGTCTC 1 cut(s) 2180
Eco47I GGWCC 6 cut(s) 432, 803, 1067, 1373, 1409, 1573
Eco57I CTGAAG 9 cut(s) 83, 123, 237, 884, 884, 932, 956, 1353, 2511
Eco88I CYCGRG 1 cut(s) 258
EcoO109I RGGNCCY 2 cut(s) 432, 1373
EcoRI GAATTC 1 cut(s) 894
EcoRII CCWGG 5 cut(s) 697, 751, 889, 1111, 1942
EcoT14I CCWWGG 3 cut(s) 1325, 1643, 2094
ErhI CCWWGG 3 cut(s) 1325, 1643, 2094
FalI AAGNNNNNCTT 2 cut(s) 2004, 2036
FaqI GGGAC 4 cut(s) 194, 445, 1405, 1983
FauI CCCGC 1 cut(s) 399
FbaI TGATCA 1 cut(s) 1315
FblI GTMKAC 2 cut(s) 1805, 1829
FspBI CTAG 9 cut(s) 195, 1020, 1532, 1644, 1878, 1892, 2267, 2483, 2532
GsaI CCCAGC 1 cut(s) 2248
GsuI CTGGAG 4 cut(s) 720, 938, 2080, 2296
HaeIII GGCC 4 cut(s) 11, 666, 874, 1481
HapII CCGG 2 cut(s) 144, 675
HgaI GACGC 2 cut(s) 2362, 2490
HincII GTYRAC 1 cut(s) 1211
HindII GTYRAC 1 cut(s) 1211
HpaII CCGG 2 cut(s) 144, 675
HphI GGTGA 6 cut(s) 611, 655, 1416, 2168, 2270, 2336
Hpy166II GTNNAC 6 cut(s) 250, 695, 1211, 1424, 1806, 1830
Hpy188III TCNNGA 4 cut(s) 260, 806, 2068, 2548
Hpy8I GTNNAC 6 cut(s) 250, 695, 1211, 1424, 1806, 1830
HpyCH4III ACNGT 7 cut(s) 883, 1185, 1822, 1918, 1984, 2045, 2203
HpyCH4IV ACGT 2 cut(s) 1059, 1074
HpyF3I CTNAG 9 cut(s) 6, 279, 330, 930, 1218, 1537, 1747, 1848, 2109
HpySE526I ACGT 2 cut(s) 1059, 1074
KflI GGGWCCC 1 cut(s) 432
Ksp22I TGATCA 1 cut(s) 1315
LguI GCTCTTC 1 cut(s) 1833
LmnI GCTCC 5 cut(s) 262, 957, 1041, 1327, 2315
MaeI CTAG 9 cut(s) 195, 1020, 1532, 1644, 1878, 1892, 2267, 2483, 2532
MaeII ACGT 2 cut(s) 1059, 1074
MaeIII GTNAC 3 cut(s) 599, 1739, 1989
MfeI CAATTG 1 cut(s) 13
MflI RGATCY 3 cut(s) 121, 1592, 2017
MhlI GDGCHC 1 cut(s) 2030
MlsI TGGCCA 1 cut(s) 666
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 5 cut(s) 235, 748, 853, 1820, 2279
MmeI TCCRAC 2 cut(s) 15, 1057
Mox20I TGGCCA 1 cut(s) 666
MroXI GAANNNNTTC 1 cut(s) 112
MscI TGGCCA 1 cut(s) 666
MseI TTAA 5 cut(s) 444, 542, 878, 939, 2205
MslI CAYNNNNRTG 2 cut(s) 1632, 2472
Msp20I TGGCCA 1 cut(s) 666
MspA1I CMGCKG 4 cut(s) 224, 1150, 1280, 1907
MspI CCGG 2 cut(s) 144, 675
MspR9I CCNGG 6 cut(s) 144, 699, 753, 891, 1113, 1944
MunI CAATTG 1 cut(s) 13
Mva1269I GAATGC 2 cut(s) 1843, 2333
MvaI CCWGG 5 cut(s) 699, 753, 891, 1113, 1944
NciI CCSGG 1 cut(s) 144
NheI GCTAGC 2 cut(s) 1891, 2531
NlaIV GGNNCC 5 cut(s) 433, 434, 1323, 1551, 2311
NmuCI GTSAC 3 cut(s) 599, 1739, 1989
NspI RCATGY 5 cut(s) 80, 326, 1294, 2373, 2471
NspV TTCGAA 2 cut(s) 159, 1226
PaeI GCATGC 2 cut(s) 326, 2471
PaqCI CACCTGC 2 cut(s) 650, 2144
PciSI GCTCTTC 1 cut(s) 1833
PctI GAATGC 2 cut(s) 1843, 2333
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 8 cut(s) 610, 623, 715, 1228, 1330, 1613, 1869, 2249
PfoI TCCNGGA 1 cut(s) 751
PleI GAGTC 5 cut(s) 235, 747, 853, 1819, 2279
PpsI GAGTC 5 cut(s) 235, 747, 853, 1819, 2279
PpuMI RGGWCCY 2 cut(s) 432, 1373
PshAI GACNNNNGTC 1 cut(s) 2372
Psp1406I AACGTT 2 cut(s) 1059, 1074
Psp5II RGGWCCY 2 cut(s) 432, 1373
Psp6I CCWGG 5 cut(s) 697, 751, 889, 1111, 1942
PspFI CCCAGC 1 cut(s) 2244
PspGI CCWGG 5 cut(s) 697, 751, 889, 1111, 1942
PspN4I GGNNCC 5 cut(s) 433, 434, 1323, 1551, 2311
PspPI GGNCC 7 cut(s) 432, 803, 1067, 1373, 1409, 1480, 1573
PspPPI RGGWCCY 2 cut(s) 432, 1373
PstI CTGCAG 1 cut(s) 2155
PstNI CAGNNNCTG 5 cut(s) 125, 1150, 1376, 1394, 1926
PsuI RGATCY 3 cut(s) 121, 1592, 2017
PvuII CAGCTG 3 cut(s) 224, 1150, 1280
RsaI GTAC 3 cut(s) 530, 694, 1960
RsaNI GTAC 3 cut(s) 529, 693, 1959
RseI CAYNNNNRTG 2 cut(s) 1632, 2472
SapI GCTCTTC 1 cut(s) 1833
SaqAI TTAA 5 cut(s) 444, 542, 878, 939, 2205
Sau96I GGNCC 7 cut(s) 432, 803, 1067, 1373, 1409, 1480, 1573
SchI GAGTC 5 cut(s) 235, 748, 853, 1820, 2279
ScrFI CCNGG 6 cut(s) 144, 699, 753, 891, 1113, 1944
SduI GDGCHC 1 cut(s) 2030
SfcI CTRYAG 4 cut(s) 117, 126, 1806, 2151
SfuI TTCGAA 2 cut(s) 159, 1226
SinI GGWCC 6 cut(s) 432, 803, 1067, 1373, 1409, 1573
SmiMI CAYNNNNRTG 2 cut(s) 1632, 2472
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SphI GCATGC 2 cut(s) 326, 2471
SsiI CCGC 5 cut(s) 290, 392, 578, 1491, 1905
SspMI CTAG 9 cut(s) 195, 1020, 1532, 1644, 1878, 1892, 2267, 2483, 2532
StyD4I CCNGG 6 cut(s) 142, 697, 751, 889, 1111, 1942
StyI CCWWGG 3 cut(s) 1325, 1643, 2094
TaaI ACNGT 7 cut(s) 883, 1185, 1822, 1918, 1984, 2045, 2203
TaiI ACGT 2 cut(s) 1062, 1077
TaqI TCGA 9 cut(s) 159, 485, 886, 1031, 1226, 1499, 1731, 1786, 1867
TaqII GACCGA 2 cut(s) 1590, 2204
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 8 cut(s) 610, 623, 715, 1228, 1330, 1613, 1869, 2249
Tru1I TTAA 5 cut(s) 444, 542, 878, 939, 2205
Tru9I TTAA 5 cut(s) 444, 542, 878, 939, 2205
TscAI CASTG 8 cut(s) 478, 1264, 1365, 1411, 1777, 1825, 1856, 2050
TseFI GTSAC 3 cut(s) 599, 1739, 1989
Tsp45I GTSAC 3 cut(s) 599, 1739, 1989
TspDTI ATGAA 9 cut(s) 178, 219, 599, 623, 800, 818, 855, 1151, 1485
TspGWI ACGGA 1 cut(s) 1874
TspRI CASTG 8 cut(s) 478, 1264, 1365, 1411, 1777, 1825, 1856, 2050
VpaK11BI GGWCC 6 cut(s) 432, 803, 1067, 1373, 1409, 1573
XapI RAATTY 5 cut(s) 70, 894, 910, 985, 2360
XceI RCATGY 5 cut(s) 80, 326, 1294, 2373, 2471
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmaJI CCTAGG 1 cut(s) 1643
XmiI GTMKAC 2 cut(s) 1805, 1829
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 9 cut(s) 195, 1020, 1532, 1644, 1878, 1892, 2267, 2483, 2532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.