Rh2AG047900

Transcriptional corepressor LEUNIG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000670
Physical Location & Seq
Forward (+)
3745262 .. 3751940
6679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG047900.1

Sequence Viewer

Length: 2580 bp
ATGGCTCAGGCCAATTGGGAAGCTGATAAAATGTTGGATGTGTATATATATGATTACCTTCTGAAGAGAAATTTACATGCTTCTGCAAAGGCATTTCAAGCTGAAGGAAAAGTTTCTACAGATCCTGTAGCTATTGATGCACCCGGTGGCTTTCTTTTCGAATGGTGGTCTGTCTTCTGGGACATATTCATCGCTAGGACGAATGAAAAGCACTCTGAAGCAGCTGCATCTTATATTGAGACTCAAGTGAACAAGGCTCGGGAGCTGCAACAGAAGCCTCAGCAGCATCCTCAAATGCAAATGCAGCATCTTTTGCAAAGGCATGCTGCTCAGCAGCAGCAGCAGCATCAACAACAGCAACAGCAACAACAACAACAACAACAACAACAACAACACCAGCAACAACAACACCCGCAACACCAGCAGCAGCAGCAGCCGCAGCAAAGACGAGATGGGACCCAACTTCTTAATGGAACTTCCAATGGGCTTGTTGGCACTGATCCTCTTTCGAGGCAGAACTCTGCAACTGCAAATGTCATGGCAACAAAAATGTACGAGGACAGATTAAAGCCTCCCATACAGAGGGATGCTTTGGATGATGCGGCTATGAAGCAAAGGTTAGGTGACAATATGAATCAGCTTATGGATTCAAATCGTGCATCATTGGTGAAAGTAGCCACAGCAGGTGGCCAGTCTCCCGGTCAAATGCTGCATGGTACACCTGGAGGTATGTTGGGGAATCTTCAACAAGCTCACAATCGGAGTCAGCAACTTCCTGGATTGATGCAGGACATAAAGAGTGAGATAATGAACCCCAGAGCTGCTGGTCCAGAAGGATCATTGATCGGTCTTCATGGATCAAATGAAGGCAGTAGCAATTTGACTCTGAAGGGGTGGCCTTTAACGGTTCGACCTGGAATTCTTCAGCAGCAAAATTCCATGATGCAGTCCTCTCAGCCCTTTAATCAGCTTCAGCTCCAGCAGCAACTTATACTTCAAAATTTAGCTTCCCCATCTACCAATGACTTGGAAACTAGAAGGCTATCGATGCTCCTCAATAGAAATATACCTAACGTTGATGTACCTAACGTTGGATCGCCTGTTCAAGTGGGTTGCCCTGTAATGCCTGGTGCAGATGCAGATATGCTTATGAAGCAACAGCAGCTGCAAAGCAACAATCAACACCAACAACAGCAACAGTATTCACAGCATCCATTTTCAAGTCAACACCCTCAGAGTTCGAATCAACACATCCAGCAGCAAGAAAAGATCACTGGTGCTGGCAGCTTTACAGCTGGTGGTAGCATGTCTAACTCCTTTCAAGGCAATGATCAGGCTCCAAAGAATCAAATGGGGCGGAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCTGCCAATAGTTCAGGGACTGCTAATACCACTGGACCATCCCCTAGTTCACCTTCAACGCCTTCTACTCACACGGCAGGAGATGCGAACTCTGTGCCAACTTTGGCCCATAATAGCGGTTCCTCGAAGTCTCTGCTTATGTTTGCTTCTGATGGTCTAGGCTCAGTTGCCTCGGTGCCAAATAAATTGAATGATATGGACCGATTTGTGGATGATGGATCTTTAGAGGATAATGTTGAATCATTCTTATCACATGATGATGCTGACCCTAGGGATAGAGTTGCTCGGTGTTCAGATGTCAGCAAAGGCTTCACTTTTTCGGAAGTTGGGGCTATTACTGCAAGTTCAAGTAAAGTCGAGTGCTGTCACTTCTCAGCAGATGGGAAAACACTTGCCACTGGTGGGCATGATCGAAAGGCTGTGTTGTGGTCTACAGAGTCCTTCACTGTAAAGTCTACGCTTGAAGAGCATTCTCAGTGGATAACGGATGTTCGATTCAGTCCTAGTATGTCAAGGCTAGCTACTTCTTCCGCTGACAAAACTGTCAGGGTCTGGGATGTTGATAATCCTGGCTATTCACTTCGTACTTTTATGGGACATTCTACAACTGTTATGTCACTTGACTTCCACCCTACTAAAGAGGATCTTCTGTGCTCTTGTGATAACAACAGTGAGATAAGATACTGGAGTATCAAGAATGGTAGTTGTATTGGAGTTTCCAAGGGTGGTGCAACTCAGATGAGGTTTCAACCTCGTCTTGGAAGGATGCTTGCTGCTGCAGGTGATACTCTTGTATCCATAATTGATGTAGAGACCGAATGTTGCACGCTTAAATTACAGGGTCATAAGAACCTTGTCAATTCTGTTTGCTGGGATTCTTCTGGTGAGTATCTAGCCTCTGTGAGTGATGACTCGGTTAGAGTATGGGCAGTTGGCTCCAGTAGCAAAGGCGAATGCCTTTACGAGTTACCCTGTTCTGGCAACAAATTTCAGACATGCGTCTTCCATCCTACTTATCCATCATTGTTGGTAATCGGCTGTTATGAGACATTGGAACTTTGGAACATGAGCGAGAACAAGACAATGACCTTGCATGCACATGACAAGCTAGTATCTTCTTTGGCAGCGTCAAGTTCCACTGGCATGGTAGCTTCAGCTAGCCATGATAAGTTCGTGAAGCTATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

859

Amino Acids

94.25

Weight (kDa)

6.49

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 2.5e-07 LisH
WD40_Gbeta PF25391 566 - 702 9.8e-12 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 568 - 631 8.4e-09 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 568 - 772 8.6e-16 MABP1/WDR62 second WD40 domain
EIF3I PF24805 570 - 652 1.2e-06 EIF3I
Beta-prop_TEP1_2nd PF25047 570 - 692 4.8e-13 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 571 - 652 7.8e-12 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 572 - 773 6e-15 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 572 - 701 4.7e-16 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 575 - 698 4.1e-19 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 577 - 701 3.6e-26 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 577 - 694 1.1e-22 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 578 - 775 6.1e-32 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 579 - 679 1.3e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML PF23409 580 - 699 4.9e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 586 - 652 3.5e-07 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 614 - 649 3.3e-09 WD domain, G-beta repeat
WDR55 PF24796 614 - 859 1.3e-12 WDR55
Beta-prop_THOC3 PF25174 620 - 859 2.2e-38 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 631 - 736 5.9e-07 WDR90/POC16, second beta-propeller
EIF3I PF24805 662 - 858 1.1e-06 EIF3I
Beta-prop_WDR36-Utp21_2nd PF25168 680 - 778 1e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 685 - 777 2.7e-12 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 706 - 858 2e-24 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 708 - 859 1.3e-13 WDHD1 first WD40 domain
WD40_Prp19 PF24814 709 - 858 7.6e-14 Prp19 WD40 domain
WD40_Gbeta PF25391 710 - 858 1.2e-06 G protein beta WD-40 repeat protein
WD40 PF00400 738 - 772 8.9e-08 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 749 - 859 8e-08 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 765 - 858 1.1e-06 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 674, 2159
AasI GACNNNNNNGTC 1 cut(s) 1931
Acc36I ACCTGC 2 cut(s) 674, 2159
AccB1I GGYRCC 1 cut(s) 1564
AccI GTMKAC 2 cut(s) 1820, 1844
AciI CCGC 6 cut(s) 413, 437, 602, 1357, 1506, 1920
AclI AACGTT 2 cut(s) 1074, 1089
AclWI GGATC 7 cut(s) 116, 494, 844, 865, 1102, 1615, 2040
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 5 cut(s) 70, 918, 934, 1000, 2375
AcuI CTGAAG 8 cut(s) 83, 123, 237, 908, 908, 956, 1368, 2526
AdeI CACNNNGTG 1 cut(s) 146
AfaI GTAC 4 cut(s) 554, 718, 1083, 1975
AfiI CCNNNNNNNGG 6 cut(s) 582, 1091, 1597, 1791, 2147, 2366
AjnI CCWGG 5 cut(s) 721, 775, 913, 1126, 1957
AloI GAACNNNNNNTCC 2 cut(s) 1086, 1118
Alw21I GWGCWC 1 cut(s) 2045
Alw26I GTCTC 5 cut(s) 233, 699, 1524, 2195, 2429
AlwI GGATC 7 cut(s) 116, 494, 844, 865, 1102, 1615, 2040
AlwNI CAGNNNCTG 5 cut(s) 125, 1165, 1391, 1409, 1941
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 4 cut(s) 9, 688, 896, 1494
ApoI RAATTY 5 cut(s) 70, 918, 934, 1000, 2375
Asp700I GAANNNNTTC 1 cut(s) 112
AspA2I CCTAGG 1 cut(s) 1658
AspS9I GGNCC 6 cut(s) 456, 827, 1388, 1424, 1495, 1588
AsuC2I CCSGG 2 cut(s) 144, 699
AsuHPI GGTGA 5 cut(s) 635, 679, 1431, 2183, 2285
AsuII TTCGAA 2 cut(s) 159, 1241
AsuNHI GCTAGC 2 cut(s) 1906, 2546
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 5 cut(s) 456, 827, 1388, 1424, 1588
AvrII CCTAGG 1 cut(s) 1658
BaeI ACNNNNGTAYC 8 cut(s) 2062, 2062, 2095, 2095, 2166, 2166, 2199, 2199
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 1 cut(s) 1564
BbsI GAAGAC 3 cut(s) 166, 842, 2383
Bbv12I GWGCWC 1 cut(s) 2045
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 8 cut(s) 446, 1021, 1435, 1535, 1598, 1763, 2403, 2416
BceAI ACGGC 1 cut(s) 1479
BcgI CGANNNNNNTGC 4 cut(s) 1465, 1499, 1504, 1538
BciT130I CCWGG 5 cut(s) 723, 777, 915, 1128, 1959
BciVI GTATCC 1 cut(s) 2194
BclI TGATCA 1 cut(s) 1330
BcnI CCSGG 2 cut(s) 144, 699
BcoDI GTCTC 5 cut(s) 233, 699, 1524, 2195, 2429
BfmI CTRYAG 4 cut(s) 117, 126, 1821, 2166
BfuAI ACCTGC 2 cut(s) 674, 2159
BfuI GTATCC 1 cut(s) 2194
BlnI CCTAGG 1 cut(s) 1658
BlpI GCTNAGC 1 cut(s) 330
Bme1390I CCNGG 7 cut(s) 144, 699, 723, 777, 915, 1128, 1959
Bme18I GGWCC 5 cut(s) 456, 827, 1388, 1424, 1588
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 6 cut(s) 456, 827, 1388, 1424, 1495, 1588
BmiI GGNNCC 6 cut(s) 457, 458, 1338, 1510, 1566, 2326
BmrFI CCNGG 7 cut(s) 144, 699, 723, 777, 915, 1128, 1959
BmtI GCTAGC 2 cut(s) 1910, 2550
BoxI GACNNNNGTC 1 cut(s) 2387
BpiI GAAGAC 3 cut(s) 166, 842, 2383
BpmI CTGGAG 4 cut(s) 744, 962, 2095, 2311
Bpu10I CCTNAGC 2 cut(s) 6, 279
Bpu1102I GCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 2 cut(s) 159, 1241
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 144, 699
Bsa29I ATCGAT 1 cut(s) 1046
BsaBI GATNNNNATC 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 2195
BsaJI CCNNGG 3 cut(s) 1560, 1658, 2109
Bsc4I CCNNNNNNNGG 6 cut(s) 582, 1091, 1597, 1791, 2147, 2366
Bse1I ACTGG 8 cut(s) 691, 1279, 1373, 1426, 1792, 2078, 2328, 2533
Bse3DI GCAATG 1 cut(s) 1333
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 5 cut(s) 723, 777, 915, 1128, 1959
BseCI ATCGAT 1 cut(s) 1046
BseDI CCNNGG 3 cut(s) 1560, 1658, 2109
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 6 cut(s) 582, 1091, 1597, 1791, 2147, 2366
BseMI GCAATG 1 cut(s) 1333
BseMII CTCAG 9 cut(s) 20, 293, 344, 968, 1247, 1566, 1776, 1877, 2138
BseNI ACTGG 8 cut(s) 691, 1279, 1373, 1426, 1792, 2078, 2328, 2533
BseRI GAGGAG 1 cut(s) 1043
BseYI CCCAGC 1 cut(s) 2259
BsgI GTGCAG 1 cut(s) 1152
BshFI GGCC 4 cut(s) 11, 690, 898, 1496
BshNI GGYRCC 1 cut(s) 1564
BshVI ATCGAT 1 cut(s) 1046
BsiHKAI GWGCWC 1 cut(s) 2045
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 144, 699
BslFI GGGAC 4 cut(s) 194, 469, 1420, 1998
BslI CCNNNNNNNGG 6 cut(s) 582, 1091, 1597, 1791, 2147, 2366
BsmAI GTCTC 5 cut(s) 233, 699, 1524, 2195, 2429
BsmFI GGGAC 4 cut(s) 194, 469, 1420, 1998
BsmI GAATGC 2 cut(s) 1858, 2348
BsnI GGCC 4 cut(s) 11, 690, 898, 1496
Bso31I GGTCTC 1 cut(s) 2195
BsoBI CYCGRG 1 cut(s) 258
Bsp119I TTCGAA 2 cut(s) 159, 1241
Bsp1286I GDGCHC 1 cut(s) 2045
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 6 cut(s) 413, 437, 602, 1357, 1506, 1920
BspANI GGCC 4 cut(s) 11, 690, 898, 1496
BspCNI CTCAG 9 cut(s) 19, 292, 343, 967, 1246, 1565, 1775, 1876, 2137
BspDI ATCGAT 1 cut(s) 1046
BspLI GGNNCC 6 cut(s) 457, 458, 1338, 1510, 1566, 2326
BspMAI CTGCAG 1 cut(s) 2170
BspMI ACCTGC 2 cut(s) 674, 2159
BspOI GCTAGC 2 cut(s) 1910, 2550
BspPI GGATC 7 cut(s) 116, 494, 844, 865, 1102, 1615, 2040
BspQI GCTCTTC 1 cut(s) 1848
BspT104I TTCGAA 2 cut(s) 159, 1241
BspT107I GGYRCC 1 cut(s) 1564
BspTNI GGTCTC 1 cut(s) 2195
BsrDI GCAATG 1 cut(s) 1333
BsrI ACTGG 8 cut(s) 691, 1279, 1373, 1426, 1792, 2078, 2328, 2533
BssECI CCNNGG 3 cut(s) 1560, 1658, 2109
BssT1I CCWWGG 2 cut(s) 1658, 2109
Bst2UI CCWGG 5 cut(s) 723, 777, 915, 1128, 1959
Bst4CI ACNGT 6 cut(s) 907, 1200, 1837, 1933, 1999, 2060
Bst6I CTCTTC 3 cut(s) 59, 1355, 1848
BstAPI GCANNNNNTGC 2 cut(s) 313, 1472
BstBI TTCGAA 2 cut(s) 159, 1241
BstC8I GCNNGC 7 cut(s) 324, 1282, 1908, 2160, 2216, 2484, 2548
BstDEI CTNAG 9 cut(s) 6, 279, 330, 954, 1233, 1552, 1762, 1863, 2124
BstMAI GTCTC 5 cut(s) 233, 699, 1524, 2195, 2429
BstNI CCWGG 5 cut(s) 723, 777, 915, 1128, 1959
BstNSI RCATGY 5 cut(s) 80, 326, 1309, 2388, 2486
BstPAI GACNNNNGTC 1 cut(s) 2387
BstSCI CCNGG 7 cut(s) 142, 697, 721, 775, 913, 1126, 1957
BstSFI CTRYAG 4 cut(s) 117, 126, 1821, 2166
BstV2I GAAGAC 3 cut(s) 166, 842, 2383
BstX2I RGATCY 3 cut(s) 121, 1607, 2032
BstXI CCANNNNNNTGG 2 cut(s) 1027, 2533
BstYI RGATCY 3 cut(s) 121, 1607, 2032
Bsu15I ATCGAT 1 cut(s) 1046
BsuI GTATCC 1 cut(s) 2194
BsuRI GGCC 4 cut(s) 11, 690, 898, 1496
BsuTUI ATCGAT 1 cut(s) 1046
BtgZI GCGATG 1 cut(s) 175
BtsIMutI CAGTG 9 cut(s) 495, 1272, 1380, 1419, 1785, 1833, 1871, 2065, 2526
BveI ACCTGC 2 cut(s) 674, 2159
Cac8I GCNNGC 7 cut(s) 324, 1282, 1908, 2160, 2216, 2484, 2548
CaiI CAGNNNCTG 5 cut(s) 125, 1165, 1391, 1409, 1941
Cfr13I GGNCC 6 cut(s) 456, 827, 1388, 1424, 1495, 1588
ClaI ATCGAT 1 cut(s) 1046
CseI GACGC 2 cut(s) 2377, 2505
Csp6I GTAC 4 cut(s) 553, 717, 1082, 1974
CviQI GTAC 4 cut(s) 553, 717, 1082, 1974
DdeI CTNAG 9 cut(s) 6, 279, 330, 954, 1233, 1552, 1762, 1863, 2124
DraIII CACNNNGTG 1 cut(s) 146
DrdI GACNNNNNNGTC 1 cut(s) 1931
DseDI GACNNNNNNGTC 1 cut(s) 1931
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 3 cut(s) 59, 1355, 1848
EarI CTCTTC 3 cut(s) 59, 1355, 1848
EciI GGCGGA 1 cut(s) 1372
Eco130I CCWWGG 2 cut(s) 1658, 2109
Eco31I GGTCTC 1 cut(s) 2195
Eco47I GGWCC 5 cut(s) 456, 827, 1388, 1424, 1588
Eco57I CTGAAG 8 cut(s) 83, 123, 237, 908, 908, 956, 1368, 2526
Eco88I CYCGRG 1 cut(s) 258
EcoO109I RGGNCCY 2 cut(s) 456, 1388
EcoRI GAATTC 1 cut(s) 918
EcoRII CCWGG 5 cut(s) 721, 775, 913, 1126, 1957
EcoT14I CCWWGG 2 cut(s) 1658, 2109
ErhI CCWWGG 2 cut(s) 1658, 2109
FalI AAGNNNNNCTT 2 cut(s) 2019, 2051
FaqI GGGAC 4 cut(s) 194, 469, 1420, 1998
FauI CCCGC 1 cut(s) 420
FbaI TGATCA 1 cut(s) 1330
FblI GTMKAC 2 cut(s) 1820, 1844
GsaI CCCAGC 1 cut(s) 2263
GsuI CTGGAG 4 cut(s) 744, 962, 2095, 2311
HaeIII GGCC 4 cut(s) 11, 690, 898, 1496
HapII CCGG 2 cut(s) 144, 699
HgaI GACGC 2 cut(s) 2377, 2505
HincII GTYRAC 1 cut(s) 1226
HindII GTYRAC 1 cut(s) 1226
HpaII CCGG 2 cut(s) 144, 699
HphI GGTGA 5 cut(s) 635, 679, 1431, 2183, 2285
Hpy166II GTNNAC 6 cut(s) 250, 719, 1226, 1439, 1821, 1845
Hpy188III TCNNGA 4 cut(s) 260, 830, 2083, 2563
Hpy8I GTNNAC 6 cut(s) 250, 719, 1226, 1439, 1821, 1845
HpyCH4III ACNGT 6 cut(s) 907, 1200, 1837, 1933, 1999, 2060
HpyCH4IV ACGT 2 cut(s) 1074, 1089
HpyF3I CTNAG 9 cut(s) 6, 279, 330, 954, 1233, 1552, 1762, 1863, 2124
HpySE526I ACGT 2 cut(s) 1074, 1089
KflI GGGWCCC 1 cut(s) 456
Ksp22I TGATCA 1 cut(s) 1330
LguI GCTCTTC 1 cut(s) 1848
LmnI GCTCC 5 cut(s) 262, 981, 1056, 1342, 2330
MaeII ACGT 2 cut(s) 1074, 1089
MaeIII GTNAC 4 cut(s) 623, 1754, 2004, 2355
MfeI CAATTG 1 cut(s) 13
MflI RGATCY 3 cut(s) 121, 1607, 2032
MhlI GDGCHC 1 cut(s) 2045
MlsI TGGCCA 1 cut(s) 690
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 5 cut(s) 235, 772, 877, 1835, 2294
MmeI TCCRAC 2 cut(s) 15, 1072
Mox20I TGGCCA 1 cut(s) 690
MroXI GAANNNNTTC 1 cut(s) 112
MscI TGGCCA 1 cut(s) 690
MseI TTAA 5 cut(s) 468, 566, 902, 963, 2220
MslI CAYNNNNRTG 3 cut(s) 1647, 2487, 2531
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 4 cut(s) 224, 1165, 1295, 1922
MspI CCGG 2 cut(s) 144, 699
MspR9I CCNGG 7 cut(s) 144, 699, 723, 777, 915, 1128, 1959
MunI CAATTG 1 cut(s) 13
Mva1269I GAATGC 2 cut(s) 1858, 2348
MvaI CCWGG 5 cut(s) 723, 777, 915, 1128, 1959
NciI CCSGG 2 cut(s) 144, 699
NheI GCTAGC 2 cut(s) 1906, 2546
NlaIV GGNNCC 6 cut(s) 457, 458, 1338, 1510, 1566, 2326
NmuCI GTSAC 3 cut(s) 623, 1754, 2004
NspI RCATGY 5 cut(s) 80, 326, 1309, 2388, 2486
NspV TTCGAA 2 cut(s) 159, 1241
PaeI GCATGC 2 cut(s) 326, 2486
PaqCI CACCTGC 2 cut(s) 674, 2159
PciSI GCTCTTC 1 cut(s) 1848
PctI GAATGC 2 cut(s) 1858, 2348
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 8 cut(s) 634, 647, 739, 1243, 1345, 1628, 1884, 2264
PfoI TCCNGGA 1 cut(s) 775
PleI GAGTC 5 cut(s) 235, 771, 877, 1834, 2294
PpsI GAGTC 5 cut(s) 235, 771, 877, 1834, 2294
PpuMI RGGWCCY 2 cut(s) 456, 1388
PshAI GACNNNNGTC 1 cut(s) 2387
Psp1406I AACGTT 2 cut(s) 1074, 1089
Psp5II RGGWCCY 2 cut(s) 456, 1388
Psp6I CCWGG 5 cut(s) 721, 775, 913, 1126, 1957
PspFI CCCAGC 1 cut(s) 2259
PspGI CCWGG 5 cut(s) 721, 775, 913, 1126, 1957
PspN4I GGNNCC 6 cut(s) 457, 458, 1338, 1510, 1566, 2326
PspPI GGNCC 6 cut(s) 456, 827, 1388, 1424, 1495, 1588
PspPPI RGGWCCY 2 cut(s) 456, 1388
PstI CTGCAG 1 cut(s) 2170
PstNI CAGNNNCTG 5 cut(s) 125, 1165, 1391, 1409, 1941
PsuI RGATCY 3 cut(s) 121, 1607, 2032
PvuII CAGCTG 3 cut(s) 224, 1165, 1295
RsaI GTAC 4 cut(s) 554, 718, 1083, 1975
RsaNI GTAC 4 cut(s) 553, 717, 1082, 1974
RseI CAYNNNNRTG 3 cut(s) 1647, 2487, 2531
SapI GCTCTTC 1 cut(s) 1848
SaqAI TTAA 5 cut(s) 468, 566, 902, 963, 2220
Sau96I GGNCC 6 cut(s) 456, 827, 1388, 1424, 1495, 1588
SchI GAGTC 5 cut(s) 235, 772, 877, 1835, 2294
ScrFI CCNGG 7 cut(s) 144, 699, 723, 777, 915, 1128, 1959
SduI GDGCHC 1 cut(s) 2045
SfcI CTRYAG 4 cut(s) 117, 126, 1821, 2166
SfuI TTCGAA 2 cut(s) 159, 1241
SinI GGWCC 5 cut(s) 456, 827, 1388, 1424, 1588
SmiMI CAYNNNNRTG 3 cut(s) 1647, 2487, 2531
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SphI GCATGC 2 cut(s) 326, 2486
SsiI CCGC 6 cut(s) 413, 437, 602, 1357, 1506, 1920
StyD4I CCNGG 7 cut(s) 142, 697, 721, 775, 913, 1126, 1957
StyI CCWWGG 2 cut(s) 1658, 2109
TaaI ACNGT 6 cut(s) 907, 1200, 1837, 1933, 1999, 2060
TaiI ACGT 2 cut(s) 1077, 1092
TaqI TCGA 9 cut(s) 159, 509, 910, 1046, 1241, 1514, 1746, 1801, 1882
TaqII GACCGA 3 cut(s) 836, 1605, 2219
TauI GCSGC 2 cut(s) 439, 605
TfiI GAWTC 8 cut(s) 634, 647, 739, 1243, 1345, 1628, 1884, 2264
Tru1I TTAA 5 cut(s) 468, 566, 902, 963, 2220
Tru9I TTAA 5 cut(s) 468, 566, 902, 963, 2220
TscAI CASTG 9 cut(s) 502, 1279, 1380, 1426, 1792, 1840, 1871, 2065, 2533
TseFI GTSAC 3 cut(s) 623, 1754, 2004
Tsp45I GTSAC 3 cut(s) 623, 1754, 2004
TspDTI ATGAA 8 cut(s) 178, 219, 623, 647, 824, 842, 879, 1166
TspGWI ACGGA 1 cut(s) 1889
TspRI CASTG 9 cut(s) 502, 1279, 1380, 1426, 1792, 1840, 1871, 2065, 2533
VpaK11BI GGWCC 5 cut(s) 456, 827, 1388, 1424, 1588
XapI RAATTY 5 cut(s) 70, 918, 934, 1000, 2375
XceI RCATGY 5 cut(s) 80, 326, 1309, 2388, 2486
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmaJI CCTAGG 1 cut(s) 1658
XmiI GTMKAC 2 cut(s) 1820, 1844
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.