Rorug06G0400700

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000670
Physical Location & Seq
Forward (+)
54553030 .. 54558853
5824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0400700.1

Sequence Viewer

Length: 2037 bp
ATGGACGAGGAGAAGCTTCAGAAATTCGTGGAAGCCTACTTGAAGAAGAAAGGGCTCAAGTTAACGGAGCACGCTCTCCAAGAAGAACTTCAGCAATCCACCACCAATTCTTCTTCCTCCCCGGTCTCTCAATTCGACCCCGACGTCGTCAGGCAAATCCTCGCCTTCTCCGAATTTGAGGATGGTCCAGCACGTTACCAAGATGGATATGCCAAGTTGAGGTCATGGACTTATACTTCTCTGGATTTGTACAGGCATGAGTTGCTTCGTGTTCTTTATCCGGTATTCATTCATTGTTTCATGGATCTGGTTGCCAAAGGTCACATTCAAGAAGCTCGGACATTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACCTACGAGATCTACAGAAGTTGGAAGGAGTTCTTTCGCCCTCTCATTTAGAGGAGATGGAATTTGCTCATTCTCTTAGGCAGAGCAAAGTGAACATAAAGATATGTCAGTACTCCTACGAGCTTCTGCTACAGTTTTTGCACAAGTCACAGTCCACCACAATGCTTGGGATTATCAATGAGCATATTAATTTCCAAGTTTCTCCTGGACAACCTAGCTCAATTACTGATGATGCTGAGGCTGTAACACTTACTGGAGGCAGCCAGGAGTCGGCTAATCAAATAAACCAGAAGGAAATTCATTGGGGGTTGCTTGAAGATTCCTTGGAAGAACACTTGGAAAAGGCCGGGGGAATGGCTTTAGATTCTGAAAAAGCAGAAGGGGAAACCAAAGAAGGGGAGGGTGATGAAAATAAGAAAAAATCAATTGAAGGAGGTAAACAGGGTGCTTCAATCAAAAAGCAAAAAAAGGACAAGGCTGTTAGTGCAACAGTGAAAAGTGCACGCCCCGAGGCAACCACTGTACCTACAGCACCACGAGTCAAACCAGAACTTACTTTGCCAGTAATTCCAACAGAAGTTGAACAGTCTATTCTTGAGGACTTGAGAAACCGTGTACAGTTGAGTAGTGCTGCGTTGCCATCTGTCAGCTTTTATACATTTATCAACACACACAATGGGTTAAACTGTTCATCTATATCCCATGATGGATCCCTGGTTGCTGGTGGATTTTCTGACTCGTCGCTGAAGGTCTGGGATATGGCAAAGATTGGGCAACAATCTGTTGGTTCAATTCTGCAGGGTGAAAATGGTACCACTTCAAGTGAACTAGTTGCTGGATCAAATGGCGGGAAAAGGCCATATACATTGTTTCAGGGTCATTCAGGGCCAGTTTATTCTGCTACTTTCAATCCTCTGGGTGATTTTATACTTTCCTCTTCAGCAGACTCAACTATTCGGTTGTGGAGCACAAACCTAAATGCCAATCTTGTTTGCTACAAGGGTCATAACTACCCTGTATGGGATGTTCAGTTTAGCCCAGTAGGTCATTATTTTGCCAGTGCATCACATGATAGAACAGCAAGAATTTGGACTATGGACAGAATACAGCCTCTGAGAATAATGGCAGGGCACTTATCTGATGTTGATTGTGTACAATGGCATTCCAACTGCAACTACATTGCAACTGGTTCTAGTGACAAAACAGTTAGATTATGGGACGTGCAGAGTGGAGAGTGTGTCCGAATATTTATTGGCCACAGGAGTATGATTTTATCTCTTGCAATGTCACCTGATGGTCGGTACATGGCTTCGGGTGATGAAGATGGCTCAATCATGATGTGGGATCTTTCAAGTGGCCGCTGCGTTACACCTTTGATGGGTCATACCTCATGCGTATGGACATTGGCTTTCAGTGGTGAAGGTTCACTCCTTGCTTCTGGATCTGCTGATTGCACGGTAAAATTATGGGACGTAACTGCAAGTACAAAGTTGCCAAAAGCTGAAGAAAAAAGTGGAAGTGCTAGCAGACTGAGGTCATTGAAGACTTTACCAACCAAGTGTACGCCTGTCTACTCCTTACGGTTTTCTCGAAGGAATCTTTTGTTTGCAGCCGGGGTCCTTTCAAAAACTGTAGAAGTACACTCCCTCCAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

678

Amino Acids

74.96

Weight (kDa)

6.1

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID_NTD2 PF04494 61 - 189 2e-45 WD40 associated region in TFIID subunit, NTD2 domain
Beta-prop_WDR3_1st PF25173 347 - 534 4.2e-25 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 347 - 466 5e-10 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 352 - 493 4.7e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 413 - 494 3.5e-15 THOC3 beta-propeller domain
WD40 PF00400 414 - 449 9.6e-09 WD domain, G-beta repeat
WD40_Gbeta PF25391 414 - 494 1.3e-06 G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd PF25047 415 - 575 5.3e-15 TEP-1 second beta-propeller
WD40_Prp19 PF24814 415 - 576 4.2e-34 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 415 - 533 2.7e-18 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 416 - 485 4e-07 WDR36/Utp21 second beta-propeller domain
EIF3I PF24805 416 - 493 1.8e-10 EIF3I
Beta-prop_IFT122_1st PF23381 417 - 561 3e-06 IFT122 first beta-propeller
Beta-prop_EML_2 PF23414 423 - 521 6.4e-07 Echinoderm microtubule-associated protein second beta-propeller
WDR55 PF24796 424 - 580 2.8e-14 WDR55
WD40 PF00400 458 - 490 1.8e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 460 - 623 5.8e-47 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 462 - 542 6.7e-20 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 464 - 627 1.1e-26 CDC20/Fizzy WD40 domain
WDR90_beta-prop_4th PF23342 466 - 583 2.9e-07 WDR90, 4th beta-propeller
WD40_MABP1-WDR62_2nd PF24782 466 - 576 1.6e-14 MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st PF23389 474 - 626 4.7e-09 WDR19 first beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 478 - 581 4.9e-13 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 482 - 616 2.2e-11 WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 484 - 565 5.9e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 488 - 583 2.3e-22 THOC3 beta-propeller domain
WD40 PF00400 496 - 533 3.9e-10 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 498 - 582 5.2e-10 CAF1B/HIR1 beta-propeller domain
WD40_Gbeta PF25391 499 - 624 1.7e-21 G protein beta WD-40 repeat protein
Beta-prop_IFT140_1st PF23383 506 - 577 1.1e-07 IFT140 first beta-propeller
WD40_WDHD1_1st PF24817 506 - 583 9.1e-15 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 516 - 636 1.2e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP PF24017 520 - 628 6.3e-09 SCAP Beta-propeller
Beta-prop_WDR3_1st PF25173 528 - 631 2e-26 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 529 - 674 1.3e-15 WDR3 second beta-propeller domain
WD40 PF00400 537 - 575 3.4e-10 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 539 - 629 3e-19 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 541 - 625 1.5e-09 TEP-1 second beta-propeller
WD40_MABP1-WDR62_1st PF24780 542 - 620 7.2e-06 MABP1/WDR62 first WD40 domain
Beta-prop_EML PF23409 548 - 621 4e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd PF24782 551 - 617 2.8e-07 MABP1/WDR62 second WD40 domain
WD40_Prp19 PF24814 557 - 624 2.7e-14 Prp19 WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 562 - 670 8.2e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 567 - 622 2.5e-06 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 579 - 617 5.6e-11 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AatII GACGTC 1 cut(s) 147
Acc65I GGTACC 1 cut(s) 1190
AccB1I GGYRCC 1 cut(s) 1190
AccI GTMKAC 1 cut(s) 1950
AciI CCGC 2 cut(s) 1227, 1738
AclWI GGATC 6 cut(s) 312, 1083, 1096, 1225, 1731, 1828
AcoI YGGCCR 2 cut(s) 1633, 1735
AcsI RAATTY 5 cut(s) 23, 173, 440, 675, 1464
AcuI CTGAAG 4 cut(s) 74, 1145, 1302, 1902
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 5 cut(s) 219, 649, 774, 1399, 1757
AhlI ACTAGT 1 cut(s) 1207
AjiI CACGTC 1 cut(s) 1600
AjnI CCWGG 3 cut(s) 583, 642, 1092
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 7 cut(s) 16, 335, 354, 502, 597, 1029, 1880
AluI AGCT 7 cut(s) 16, 335, 354, 502, 597, 1029, 1880
Alw21I GWGCWC 3 cut(s) 72, 883, 1349
Alw26I GTCTC 1 cut(s) 130
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 6 cut(s) 312, 1083, 1096, 1225, 1731, 1828
AlwNI CAGNNNCTG 1 cut(s) 1492
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 5 cut(s) 723, 1235, 1265, 1633, 1735
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 4 cut(s) 639, 1010, 1740, 1988
ApoI RAATTY 5 cut(s) 23, 173, 440, 675, 1464
AseI ATTAAT 1 cut(s) 567
Asp700I GAANNNNTTC 2 cut(s) 87, 408
Asp718I GGTACC 1 cut(s) 1190
AspS9I GGNCC 3 cut(s) 185, 1265, 1996
AsuC2I CCSGG 3 cut(s) 122, 727, 1993
AsuHPI GGTGA 6 cut(s) 794, 1193, 1310, 1659, 1706, 1808
AsuNHI GCTAGC 1 cut(s) 1901
AvaI CYCGRG 1 cut(s) 887
AvaII GGWCC 2 cut(s) 185, 1996
BaeGI GKGCMC 2 cut(s) 883, 1512
BaeI ACNNNNGTAYC 2 cut(s) 885, 918
BalI TGGCCA 1 cut(s) 1635
BamHI GGATCC 1 cut(s) 1088
BanI GGYRCC 1 cut(s) 1190
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 1 cut(s) 915
BbsI GAAGAC 2 cut(s) 369, 1928
Bbv12I GWGCWC 3 cut(s) 72, 883, 1349
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 4 cut(s) 651, 997, 1727, 2000
BccI CCATC 8 cut(s) 176, 197, 430, 1027, 1079, 1667, 1697, 1750
BciT130I CCWGG 3 cut(s) 585, 644, 1094
BcnI CCSGG 3 cut(s) 122, 727, 1993
BcoDI GTCTC 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 1207
BfaI CTAG 4 cut(s) 594, 1208, 1572, 1902
BfmI CTRYAG 5 cut(s) 392, 509, 906, 1175, 2010
BglII AGATCT 1 cut(s) 388
BisI GCNGC 5 cut(s) 640, 1011, 1738, 1741, 1989
BlsI GCNGC 5 cut(s) 641, 1012, 1739, 1742, 1990
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 6 cut(s) 122, 585, 644, 727, 1094, 1993
Bme18I GGWCC 2 cut(s) 185, 1996
BmeT110I CYCGRG 1 cut(s) 887
BmgBI CACGTC 1 cut(s) 1600
BmgT120I GGNCC 3 cut(s) 185, 1265, 1996
BmiI GGNNCC 3 cut(s) 1090, 1192, 1997
BmrFI CCNGG 6 cut(s) 122, 585, 644, 727, 1094, 1993
BmrI ACTGGG 1 cut(s) 1412
BmsI GCATC 3 cut(s) 366, 601, 1451
BmtI GCTAGC 1 cut(s) 1905
BmuI ACTGGG 1 cut(s) 1412
BoxI GACNNNNGTC 1 cut(s) 1912
BpiI GAAGAC 2 cut(s) 369, 1928
BpmI CTGGAG 2 cut(s) 654, 2012
Bpu10I CCTNAGC 1 cut(s) 615
BpuEI CTTGAG 3 cut(s) 41, 995, 1003
BpuMI CCSGG 3 cut(s) 122, 727, 1993
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 6 cut(s) 120, 702, 726, 888, 1092, 1992
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 3 cut(s) 1602, 1632, 2010
Bsc4I CCNNNNNNNGG 5 cut(s) 219, 649, 774, 1399, 1757
Bse1I ACTGG 6 cut(s) 637, 941, 1268, 1418, 1437, 1570
Bse3DI GCAATG 2 cut(s) 1557, 1668
BseBI CCWGG 3 cut(s) 585, 644, 1094
BseDI CCNNGG 6 cut(s) 120, 702, 726, 888, 1092, 1992
BseGI GGATG 2 cut(s) 187, 1408
BseLI CCNNNNNNNGG 5 cut(s) 219, 649, 774, 1399, 1757
BseMI GCAATG 2 cut(s) 1557, 1668
BseMII CTCAG 3 cut(s) 606, 1484, 1901
BseNI ACTGG 6 cut(s) 637, 941, 1268, 1418, 1437, 1570
BseRI GAGGAG 2 cut(s) 23, 446
BseSI GKGCMC 2 cut(s) 883, 1512
BseXI GCAGC 4 cut(s) 651, 997, 1727, 2000
BsgI GTGCAG 1 cut(s) 1622
BshFI GGCC 5 cut(s) 725, 1237, 1267, 1635, 1737
BshNI GGYRCC 1 cut(s) 1190
BsiHKAI GWGCWC 3 cut(s) 72, 883, 1349
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 4 cut(s) 122, 281, 726, 1992
BslFI GGGAC 2 cut(s) 1610, 1862
BslI CCNNNNNNNGG 5 cut(s) 219, 649, 774, 1399, 1757
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 2 cut(s) 1610, 1862
BsmI GAATGC 1 cut(s) 1540
BsnI GGCC 5 cut(s) 725, 1237, 1267, 1635, 1737
Bso31I GGTCTC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 887
Bsp1286I GDGCHC 5 cut(s) 57, 72, 883, 1349, 1512
Bsp1407I TGTACA 3 cut(s) 249, 994, 1531
Bsp143I GATC 6 cut(s) 304, 388, 1088, 1217, 1723, 1820
BspACI CCGC 2 cut(s) 1227, 1738
BspANI GGCC 5 cut(s) 725, 1237, 1267, 1635, 1737
BspCNI CTCAG 3 cut(s) 607, 1485, 1902
BspHI TCATGA 1 cut(s) 1713
BspLI GGNNCC 3 cut(s) 1090, 1192, 1997
BspMAI CTGCAG 1 cut(s) 1179
BspOI GCTAGC 1 cut(s) 1905
BspPI GGATC 6 cut(s) 312, 1083, 1096, 1225, 1731, 1828
BspT107I GGYRCC 1 cut(s) 1190
BspTNI GGTCTC 1 cut(s) 130
BsrDI GCAATG 2 cut(s) 1557, 1668
BsrGI TGTACA 3 cut(s) 249, 994, 1531
BsrI ACTGG 6 cut(s) 637, 941, 1268, 1418, 1437, 1570
BssECI CCNNGG 6 cut(s) 120, 702, 726, 888, 1092, 1992
BssMI GATC 6 cut(s) 304, 388, 1088, 1217, 1723, 1820
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 1 cut(s) 702
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 3 cut(s) 585, 644, 1094
Bst6I CTCTTC 1 cut(s) 1321
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 262
BstAUI TGTACA 3 cut(s) 249, 994, 1531
BstC8I GCNNGC 3 cut(s) 72, 883, 1903
BstDEI CTNAG 4 cut(s) 455, 615, 1493, 1910
BstF5I GGATG 2 cut(s) 187, 1408
BstKTI GATC 6 cut(s) 307, 391, 1091, 1220, 1726, 1823
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 6 cut(s) 304, 388, 1088, 1217, 1723, 1820
BstMWI GCNNNNNNNGC 2 cut(s) 262, 863
BstNI CCWGG 3 cut(s) 585, 644, 1094
BstPAI GACNNNNGTC 1 cut(s) 1912
BstSCI CCNGG 6 cut(s) 120, 583, 642, 725, 1092, 1991
BstSFI CTRYAG 5 cut(s) 392, 509, 906, 1175, 2010
BstSLI GKGCMC 2 cut(s) 883, 1512
BstV1I GCAGC 4 cut(s) 651, 997, 1727, 2000
BstV2I GAAGAC 2 cut(s) 369, 1928
BstX2I RGATCY 5 cut(s) 304, 388, 1088, 1723, 1820
BstYI RGATCY 5 cut(s) 304, 388, 1088, 1723, 1820
BsuRI GGCC 5 cut(s) 725, 1237, 1267, 1635, 1737
BtrI CACGTC 1 cut(s) 1600
BtsCI GGATG 2 cut(s) 187, 1408
BtsIMutI CAGTG 4 cut(s) 876, 897, 1444, 1798
Cac8I GCNNGC 3 cut(s) 72, 883, 1903
CaiI CAGNNNCTG 1 cut(s) 1492
CciI TCATGA 1 cut(s) 1713
Cfr13I GGNCC 3 cut(s) 185, 1265, 1996
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 9 cut(s) 225, 257, 301, 368, 1082, 1448, 1684, 1714, 1770
DdeI CTNAG 4 cut(s) 455, 615, 1493, 1910
DpnI GATC 6 cut(s) 306, 390, 1090, 1219, 1725, 1822
DpnII GATC 6 cut(s) 304, 388, 1088, 1217, 1723, 1820
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 2 cut(s) 1633, 1735
Eam1104I CTCTTC 1 cut(s) 1321
EarI CTCTTC 1 cut(s) 1321
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 2 cut(s) 185, 1996
Eco57I CTGAAG 4 cut(s) 74, 1145, 1302, 1902
Eco88I CYCGRG 1 cut(s) 887
EcoO109I RGGNCCY 1 cut(s) 1996
EcoRII CCWGG 3 cut(s) 583, 642, 1092
EcoT14I CCWWGG 1 cut(s) 702
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 702
FaeI CATG 9 cut(s) 228, 260, 304, 371, 1085, 1451, 1687, 1717, 1773
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 396, 428
FaqI GGGAC 2 cut(s) 1610, 1862
FatI CATG 9 cut(s) 224, 256, 300, 367, 1081, 1447, 1683, 1713, 1769
FauI CCCGC 1 cut(s) 1220
FblI GTMKAC 1 cut(s) 1950
Fnu4HI GCNGC 5 cut(s) 640, 1011, 1738, 1741, 1989
FokI GGATG 2 cut(s) 194, 1415
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 5 cut(s) 640, 1011, 1738, 1741, 1989
FspBI CTAG 4 cut(s) 594, 1208, 1572, 1902
GluI GCNGC 5 cut(s) 640, 1011, 1738, 1741, 1989
GsuI CTGGAG 2 cut(s) 654, 2012
HaeIII GGCC 5 cut(s) 725, 1237, 1267, 1635, 1737
HapII CCGG 4 cut(s) 122, 281, 726, 1992
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 9 cut(s) 228, 260, 304, 371, 1085, 1451, 1687, 1717, 1773
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 7 cut(s) 647, 698, 743, 918, 1115, 1325, 1975
HpaI GTTAAC 1 cut(s) 63
HpaII CCGG 4 cut(s) 122, 281, 726, 1992
HphI GGTGA 6 cut(s) 794, 1193, 1310, 1659, 1706, 1808
Hpy188I TCNGA 8 cut(s) 21, 172, 339, 748, 1114, 1494, 1519, 1622
Hpy188III TCNNGA 7 cut(s) 242, 329, 974, 1714, 1818, 1968, 2029
Hpy99I CGWCG 3 cut(s) 146, 149, 1123
HpyAV CCTTC 9 cut(s) 175, 398, 664, 752, 767, 803, 1120, 1793, 1965
HpyCH4IV ACGT 4 cut(s) 144, 193, 1599, 1851
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 863
HpyF3I CTNAG 4 cut(s) 455, 615, 1493, 1910
HpySE526I ACGT 4 cut(s) 144, 193, 1599, 1851
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 9 cut(s) 228, 260, 304, 371, 1085, 1451, 1687, 1717, 1773
KpnI GGTACC 1 cut(s) 1194
KspAI GTTAAC 1 cut(s) 63
Kzo9I GATC 6 cut(s) 304, 388, 1088, 1217, 1723, 1820
LmnI GCTCC 2 cut(s) 67, 1344
Lsp1109I GCAGC 4 cut(s) 651, 997, 1727, 2000
LweI GCATC 3 cut(s) 366, 601, 1451
MaeI CTAG 4 cut(s) 594, 1208, 1572, 1902
MaeII ACGT 4 cut(s) 144, 193, 1599, 1851
MaeIII GTNAC 8 cut(s) 194, 320, 525, 622, 1574, 1665, 1744, 1852
MalI GATC 6 cut(s) 306, 390, 1090, 1219, 1725, 1822
MboI GATC 6 cut(s) 304, 388, 1088, 1217, 1723, 1820
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 5 cut(s) 304, 388, 1088, 1723, 1820
MhlI GDGCHC 5 cut(s) 57, 72, 883, 1349, 1512
MlsI TGGCCA 1 cut(s) 1635
MluNI TGGCCA 1 cut(s) 1635
MlyI GAGTC 4 cut(s) 656, 927, 1109, 1319
MmeI TCCRAC 3 cut(s) 381, 974, 1569
Mox20I TGGCCA 1 cut(s) 1635
MroXI GAANNNNTTC 2 cut(s) 87, 408
MscI TGGCCA 1 cut(s) 1635
MseI TTAA 3 cut(s) 62, 567, 1061
MslI CAYNNNNRTG 2 cut(s) 539, 1774
Msp20I TGGCCA 1 cut(s) 1635
MspA1I CMGCKG 1 cut(s) 1740
MspI CCGG 4 cut(s) 122, 281, 726, 1992
MspR9I CCNGG 6 cut(s) 122, 585, 644, 727, 1094, 1993
MunI CAATTG 1 cut(s) 804
Mva1269I GAATGC 1 cut(s) 1540
MvaI CCWGG 3 cut(s) 585, 644, 1094
MwoI GCNNNNNNNGC 2 cut(s) 262, 863
NciI CCSGG 3 cut(s) 122, 727, 1993
NdeII GATC 6 cut(s) 304, 388, 1088, 1217, 1723, 1820
NheI GCTAGC 1 cut(s) 1901
NlaIII CATG 9 cut(s) 228, 260, 304, 371, 1085, 1451, 1687, 1717, 1773
NlaIV GGNNCC 3 cut(s) 1090, 1192, 1997
NmuCI GTSAC 4 cut(s) 320, 525, 1574, 1665
PagI TCATGA 1 cut(s) 1713
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 168, 1966
PctI GAATGC 1 cut(s) 1540
PdmI GAANNNNTTC 2 cut(s) 87, 408
PfeI GAWTC 3 cut(s) 698, 743, 1975
PflFI GACNNNGTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 5 cut(s) 641, 1012, 1739, 1742, 1990
PleI GAGTC 4 cut(s) 655, 926, 1109, 1319
PpsI GAGTC 4 cut(s) 655, 926, 1109, 1319
PpuMI RGGWCCY 1 cut(s) 1996
PshAI GACNNNNGTC 1 cut(s) 1912
PshBI ATTAAT 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 1996
Psp6I CCWGG 3 cut(s) 583, 642, 1092
PspGI CCWGG 3 cut(s) 583, 642, 1092
PspN4I GGNNCC 3 cut(s) 1090, 1192, 1997
PspPI GGNCC 3 cut(s) 185, 1265, 1996
PspPPI RGGWCCY 1 cut(s) 1996
PsrI GAACNNNNNNTAC 2 cut(s) 1389, 1421
PstI CTGCAG 1 cut(s) 1179
PstNI CAGNNNCTG 1 cut(s) 1492
PsuI RGATCY 5 cut(s) 304, 388, 1088, 1723, 1820
PsyI GACNNNGTC 1 cut(s) 146
RseI CAYNNNNRTG 2 cut(s) 539, 1774
SaqAI TTAA 3 cut(s) 62, 567, 1061
SatI GCNGC 5 cut(s) 640, 1011, 1738, 1741, 1989
Sau3AI GATC 6 cut(s) 304, 388, 1088, 1217, 1723, 1820
Sau96I GGNCC 3 cut(s) 185, 1265, 1996
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 4 cut(s) 656, 927, 1109, 1319
ScrFI CCNGG 6 cut(s) 122, 585, 644, 727, 1094, 1993
SduI GDGCHC 5 cut(s) 57, 72, 883, 1349, 1512
SfaNI GCATC 3 cut(s) 366, 601, 1451
SfcI CTRYAG 5 cut(s) 392, 509, 906, 1175, 2010
SinI GGWCC 2 cut(s) 185, 1996
SmiMI CAYNNNNRTG 2 cut(s) 539, 1774
SmlI CTYRAG 3 cut(s) 56, 974, 982
SmoI CTYRAG 3 cut(s) 56, 974, 982
SpeI ACTAGT 1 cut(s) 1207
SsiI CCGC 2 cut(s) 1227, 1738
SspI AATATT 1 cut(s) 1626
SspMI CTAG 4 cut(s) 594, 1208, 1572, 1902
StyD4I CCNGG 6 cut(s) 120, 583, 642, 725, 1092, 1991
StyI CCWWGG 1 cut(s) 702
TaiI ACGT 4 cut(s) 147, 196, 1602, 1854
TaqI TCGA 2 cut(s) 135, 1969
TatI WGTACW 6 cut(s) 249, 489, 994, 1531, 1862, 2017
TauI GCSGC 1 cut(s) 1740
TfiI GAWTC 3 cut(s) 698, 743, 1975
Tru1I TTAA 3 cut(s) 62, 567, 1061
Tru9I TTAA 3 cut(s) 62, 567, 1061
TscAI CASTG 4 cut(s) 876, 904, 1444, 1798
TseFI GTSAC 4 cut(s) 320, 525, 1574, 1665
TseI GCWGC 4 cut(s) 639, 1010, 1740, 1988
Tsp45I GTSAC 4 cut(s) 320, 525, 1574, 1665
TspDTI ATGAA 8 cut(s) 277, 281, 289, 384, 668, 801, 1059, 1713
TspGWI ACGGA 2 cut(s) 80, 347
TspRI CASTG 4 cut(s) 876, 904, 1444, 1798
Tth111I GACNNNGTC 1 cut(s) 146
VneI GTGCAC 1 cut(s) 879
VpaK11BI GGWCC 2 cut(s) 185, 1996
VspI ATTAAT 1 cut(s) 567
XapI RAATTY 5 cut(s) 23, 173, 440, 675, 1464
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XmiI GTMKAC 1 cut(s) 1950
XmnI GAANNNNTTC 2 cut(s) 87, 408
XspI CTAG 4 cut(s) 594, 1208, 1572, 1902
ZraI GACGTC 1 cut(s) 145
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.